RNA–Protein interactions for RNA: ENST00000440271.5

TRIM39-210, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 588 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-210ENST00000440271 NPM1P06748 294 aaKnown RBP eCLIP36.68■■■■□ 3.46
TRIM39-210ENST00000440271 FAM69CQ0P6D2 419 aa36.67■■■■□ 3.46
TRIM39-210ENST00000440271 RUSC2Q8N2Y8 1516 aa36.67■■■■□ 3.46
TRIM39-210ENST00000440271 ABCC10Q5T3U5 1492 aa36.62■■■■□ 3.45
TRIM39-210ENST00000440271 MAPKBP1O60336 1514 aa36.55■■■■□ 3.44
TRIM39-210ENST00000440271 KIAA0586Q9BVV6 1533 aa36.51■■■■□ 3.44
TRIM39-210ENST00000440271 IGF1RP08069 1367 aa36.51■■■■□ 3.43
TRIM39-210ENST00000440271 ADCY10Q96PN6 1610 aa36.5■■■■□ 3.43
TRIM39-210ENST00000440271 DIP2BQ9P265 1576 aa36.47■■■■□ 3.43
TRIM39-210ENST00000440271 KIF27Q86VH2 1401 aa36.42■■■■□ 3.42
TRIM39-210ENST00000440271 CUL7Q14999 1698 aa36.34■■■■□ 3.41
TRIM39-210ENST00000440271 PTPRGP23470 1445 aa36.3■■■■□ 3.4
TRIM39-210ENST00000440271 KDM6BO15054 1643 aa36.28■■■■□ 3.4
TRIM39-210ENST00000440271 KDM4FA0A1W2PPD8 638 aa36.24■■■■□ 3.39
TRIM39-210ENST00000440271 TTBK1Q5TCY1 1321 aaPredicted RBP36.24■■■■□ 3.39
TRIM39-210ENST00000440271 CARMIL1Q5VZK9 1371 aa36.24■■■■□ 3.39
TRIM39-210ENST00000440271 TSPOAP1O95153 1857 aa36.22■■■■□ 3.39
TRIM39-210ENST00000440271 TNIKQ9UKE5 1360 aa36.17■■■■□ 3.38
TRIM39-210ENST00000440271 CARMIL2Q6F5E8 1435 aa36.17■■■■□ 3.38
TRIM39-210ENST00000440271 ABCC2Q92887 1545 aa36.13■■■■□ 3.37
TRIM39-210ENST00000440271 ASXL2Q76L83 1435 aa36.07■■■■□ 3.36
TRIM39-210ENST00000440271 PLB1Q6P1J6 1458 aa36.05■■■■□ 3.36
TRIM39-210ENST00000440271 IQGAP2Q13576 1575 aa36.04■■■■□ 3.36
TRIM39-210ENST00000440271 UHRF1BP1LA0JNW5 1464 aa36.01■■■■□ 3.36
TRIM39-210ENST00000440271 GLI2P10070 1586 aa35.99■■■■□ 3.35
TRIM39-210ENST00000440271 UACAQ9BZF9 1416 aa35.99■■■■□ 3.35
TRIM39-210ENST00000440271 DISP1Q96F81 1524 aa35.94■■■■□ 3.34
TRIM39-210ENST00000440271 PPRC1Q5VV67 1664 aaKnown RBP35.93■■■■□ 3.34
TRIM39-210ENST00000440271 KDM5BQ9UGL1 1544 aa35.85■■■■□ 3.33
TRIM39-210ENST00000440271 EPRSP07814 1512 aaKnown RBP35.83■■■■□ 3.33
TRIM39-210ENST00000440271 RAPGEF2Q9Y4G8 1499 aa35.83■■■■□ 3.33
TRIM39-210ENST00000440271 UGGT2Q9NYU1 1516 aa35.82■■■■□ 3.32
TRIM39-210ENST00000440271 COL17A1Q9UMD9 1497 aaPredicted RBP35.81■■■■□ 3.32
TRIM39-210ENST00000440271 ADGRL1O94910 1474 aa35.76■■■■□ 3.32
TRIM39-210ENST00000440271 MAP3K4Q9Y6R4 1608 aa35.75■■■■□ 3.31
TRIM39-210ENST00000440271 TEX14Q8IWB6 1497 aa35.73■■■■□ 3.31
TRIM39-210ENST00000440271 ZCCHC11Q5TAX3 1644 aaKnown RBP35.72■■■■□ 3.31
TRIM39-210ENST00000440271 KIAA0556O60303 1618 aa35.72■■■■□ 3.31
TRIM39-210ENST00000440271 ILDR1Q86SU0 546 aaPredicted RBP35.63■■■■□ 3.29
TRIM39-210ENST00000440271 WDR7Q9Y4E6 1490 aa35.61■■■■□ 3.29
TRIM39-210ENST00000440271 KCNH8Q96L42 1107 aa35.51■■■■□ 3.28
TRIM39-210ENST00000440271 GOLGA3Q08378 1498 aa35.49■■■■□ 3.27
TRIM39-210ENST00000440271 CD109Q6YHK3 1445 aa35.49■■■■□ 3.27
TRIM39-210ENST00000440271 CTTNBP2Q8WZ74 1663 aa35.46■■■■□ 3.27
TRIM39-210ENST00000440271 MAGI3Q5TCQ9 1506 aa35.46■■■■□ 3.27
TRIM39-210ENST00000440271 ABCA8O94911 1581 aa35.44■■■■□ 3.26
TRIM39-210ENST00000440271 HECW2Q9P2P5 1572 aa35.41■■■■□ 3.26
TRIM39-210ENST00000440271 CFAP43Q8NDM7 1665 aa35.4■■■■□ 3.26
TRIM39-210ENST00000440271 PRXQ9BXM0 1461 aa35.34■■■■□ 3.25
TRIM39-210ENST00000440271 FAM9AQ8IZU1 332 aaPredicted RBP35.25■■■■□ 3.23
TRIM39-210ENST00000440271 ARID3CA6NKF2 412 aa35.24■■■■□ 3.23
TRIM39-210ENST00000440271 P3H3Q8IVL6 736 aa35.22■■■■□ 3.23
TRIM39-210ENST00000440271 ATP10BO94823 1461 aa35.2■■■■□ 3.23
TRIM39-210ENST00000440271 ARAP3Q8WWN8 1544 aa35.2■■■■□ 3.23
TRIM39-210ENST00000440271 KIF21BO75037 1637 aa35.16■■■■□ 3.22
TRIM39-210ENST00000440271 PHLDB1Q86UU1 1377 aa35.1■■■■□ 3.21
TRIM39-210ENST00000440271 ABCA9Q8IUA7 1624 aa35.06■■■■□ 3.2
TRIM39-210ENST00000440271 RAPGEF3O95398 923 aa35.03■■■■□ 3.2
TRIM39-210ENST00000440271 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP35■■■■□ 3.19
TRIM39-210ENST00000440271 HNRNPUL2Q1KMD3 747 aaKnown RBP35■■■■□ 3.19
TRIM39-210ENST00000440271 CSRNP3Q8WYN3 585 aa35■■■■□ 3.19
TRIM39-210ENST00000440271 SAMD9Q5K651 1589 aa34.97■■■■□ 3.19
TRIM39-210ENST00000440271 NEO1Q92859 1461 aa34.97■■■■□ 3.19
TRIM39-210ENST00000440271 PTPRMP28827 1452 aa34.95■■■■□ 3.19
TRIM39-210ENST00000440271 RAPGEF6Q8TEU7 1601 aa34.95■■■■□ 3.18
TRIM39-210ENST00000440271 ADAMTSL3P82987 1691 aa34.93■■■■□ 3.18
TRIM39-210ENST00000440271 NUP153P49790 1475 aaKnown RBP34.86■■■■□ 3.17
TRIM39-210ENST00000440271 ARID4BQ4LE39 1312 aaPredicted RBP34.85■■■■□ 3.17
TRIM39-210ENST00000440271 RANGAP1P46060 587 aaPredicted RBP34.84■■■■□ 3.17
TRIM39-210ENST00000440271 FBXO41Q8TF61 875 aa34.83■■■■□ 3.17
TRIM39-210ENST00000440271 FRMPD1Q5SYB0 1578 aa34.83■■■■□ 3.17
TRIM39-210ENST00000440271 BCORL1Q5H9F3 1711 aa34.79■■■■□ 3.16
TRIM39-210ENST00000440271 PLEKHD1A6NEE1 506 aa34.79■■■■□ 3.16
TRIM39-210ENST00000440271 FHOD3Q2V2M9 1422 aa34.78■■■■□ 3.16
TRIM39-210ENST00000440271 MADDQ8WXG6 1647 aa34.73■■■■□ 3.15
TRIM39-210ENST00000440271 DENND4BO75064 1496 aaPredicted RBP34.72■■■■□ 3.15
TRIM39-210ENST00000440271 AKNAQ7Z591 1439 aa34.71■■■■□ 3.15
TRIM39-210ENST00000440271 EEA1Q15075 1411 aa34.68■■■■□ 3.14
TRIM39-210ENST00000440271 PCF11O94913 1555 aaKnown RBP34.67■■■■□ 3.14
TRIM39-210ENST00000440271 FANCAO15360 1455 aa34.66■■■■□ 3.14
TRIM39-210ENST00000440271 ARHGEF40Q8TER5 1519 aa34.65■■■■□ 3.14
TRIM39-210ENST00000440271 LMTK3Q96Q04 1460 aa34.65■■■■□ 3.14
TRIM39-210ENST00000440271 RICTORQ6R327 1708 aa34.64■■■■□ 3.14
TRIM39-210ENST00000440271 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.63■■■■□ 3.13
TRIM39-210ENST00000440271 RIMS1Q86UR5 1692 aaKnown RBP34.59■■■■□ 3.13
TRIM39-210ENST00000440271 CFAP74Q9C0B2 1584 aa34.57■■■■□ 3.13
TRIM39-210ENST00000440271 POGZQ7Z3K3 1410 aa34.55■■■■□ 3.12
TRIM39-210ENST00000440271 TTC37Q6PGP7 1564 aa34.54■■■■□ 3.12
TRIM39-210ENST00000440271 PLPPR3Q6T4P5 718 aa34.53■■■■□ 3.12
TRIM39-210ENST00000440271 EFCAB5A4FU69 1503 aa34.53■■■■□ 3.12
TRIM39-210ENST00000440271 ZMYM4Q5VZL5 1548 aa34.53■■■■□ 3.12
TRIM39-210ENST00000440271 YEATS2Q9ULM3 1422 aa34.53■■■■□ 3.12
TRIM39-210ENST00000440271 HSPA2P54652 639 aa34.52■■■■□ 3.12
TRIM39-210ENST00000440271 ZFYVE16Q7Z3T8 1539 aa34.5■■■■□ 3.11
TRIM39-210ENST00000440271 MAGI2Q86UL8 1455 aa34.48■■■■□ 3.11
TRIM39-210ENST00000440271 CDK13Q14004 1512 aaKnown RBP34.46■■■■□ 3.11
TRIM39-210ENST00000440271 SIGLEC1Q9BZZ2 1709 aa34.45■■■■□ 3.11
TRIM39-210ENST00000440271 MLECQ14165 292 aa34.45■■■■□ 3.11
TRIM39-210ENST00000440271 PLCH2O75038 1416 aa34.45■■■■□ 3.11
TRIM39-210ENST00000440271 SCAPERQ9BY12 1400 aa34.44■■■■□ 3.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms