RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 SETD5Q9C0A6 1442 aa12.52□□□□□ -0.41
COPB1-202ENST00000439561 CCER2I3L3R5 266 aa12.51□□□□□ -0.41
COPB1-202ENST00000439561 B4GALNT3Q6L9W6 998 aa12.5□□□□□ -0.41
COPB1-202ENST00000439561 ARAP1Q96P48 1450 aa12.5□□□□□ -0.41
COPB1-202ENST00000439561 MSH5O43196 834 aa12.49□□□□□ -0.41
COPB1-202ENST00000439561 PPP1R15AO75807 674 aaPredicted RBP12.49□□□□□ -0.41
COPB1-202ENST00000439561 KIF27Q86VH2 1401 aa12.49□□□□□ -0.41
COPB1-202ENST00000439561 RTL5Q5HYW3 569 aaPredicted RBP12.47□□□□□ -0.41
COPB1-202ENST00000439561 CHIC2Q9UKJ5 165 aa12.46□□□□□ -0.41
COPB1-202ENST00000439561 RRBP1Q9P2E9 1410 aaKnown RBP12.46□□□□□ -0.42
COPB1-202ENST00000439561 MRS2Q9HD23 443 aa12.46□□□□□ -0.42
COPB1-202ENST00000439561 WDR97A6NE52 1622 aa12.44□□□□□ -0.42
COPB1-202ENST00000439561 ARID3CA6NKF2 412 aa12.44□□□□□ -0.42
COPB1-202ENST00000439561 DEKP35659 375 aaKnown RBP12.43□□□□□ -0.42
COPB1-202ENST00000439561 NPM2Q86SE8 214 aaKnown RBP12.42□□□□□ -0.42
COPB1-202ENST00000439561 ZNF326Q5BKZ1 582 aaKnown RBP12.42□□□□□ -0.42
COPB1-202ENST00000439561 RRP7BPQ9NSQ0 103 aa12.41□□□□□ -0.42
COPB1-202ENST00000439561 PPP4R2Q9NY27 417 aa12.41□□□□□ -0.42
COPB1-202ENST00000439561 ATAD2BQ9ULI0 1458 aa12.4□□□□□ -0.43
COPB1-202ENST00000439561 PHLDB1Q86UU1 1377 aa12.39□□□□□ -0.43
COPB1-202ENST00000439561 ANP32AP39687 249 aaKnown RBP12.39□□□□□ -0.43
COPB1-202ENST00000439561 TIMELESSQ9UNS1 1208 aa12.38□□□□□ -0.43
COPB1-202ENST00000439561 CCDC136Q96JN2 1154 aa12.38□□□□□ -0.43
COPB1-202ENST00000439561 HSPA5P11021 654 aaKnown RBP12.37□□□□□ -0.43
COPB1-202ENST00000439561 EIF4G2P78344 907 aaKnown RBP eCLIP12.37□□□□□ -0.43
COPB1-202ENST00000439561 FANCIQ9NVI1 1328 aa12.36□□□□□ -0.43
COPB1-202ENST00000439561 PRXQ9BXM0 1461 aa12.36□□□□□ -0.43
COPB1-202ENST00000439561 ARHGAP35Q9NRY4 1499 aa12.36□□□□□ -0.43
COPB1-202ENST00000439561 NOP58Q9Y2X3 529 aaKnown RBP12.36□□□□□ -0.43
COPB1-202ENST00000439561 CUX2O14529 1486 aa12.36□□□□□ -0.43
COPB1-202ENST00000439561 MTUS2Q5JR59 1369 aa12.36□□□□□ -0.43
COPB1-202ENST00000439561 SALL2Q9Y467 1007 aaPredicted RBP12.34□□□□□ -0.43
COPB1-202ENST00000439561 CARMIL1Q5VZK9 1371 aa12.33□□□□□ -0.43
COPB1-202ENST00000439561 MAPKBP1O60336 1514 aa12.33□□□□□ -0.44
COPB1-202ENST00000439561 ZBTB47Q9UFB7 747 aaPredicted RBP12.33□□□□□ -0.44
COPB1-202ENST00000439561 FOXD1Q16676 465 aa12.32□□□□□ -0.44
COPB1-202ENST00000439561 MYT1LQ9UL68 1186 aa12.32□□□□□ -0.44
COPB1-202ENST00000439561 RTN4Q9NQC3 1192 aaKnown RBP12.32□□□□□ -0.44
COPB1-202ENST00000439561 CCDC184Q52MB2 194 aa12.32□□□□□ -0.44
COPB1-202ENST00000439561 ERICH3Q5RHP9 1530 aa12.3□□□□□ -0.44
COPB1-202ENST00000439561 FHOD3Q2V2M9 1422 aa12.29□□□□□ -0.44
COPB1-202ENST00000439561 TOP2BQ02880 1626 aa12.28□□□□□ -0.44
COPB1-202ENST00000439561 FHAD1B1AJZ9 1412 aa12.28□□□□□ -0.44
COPB1-202ENST00000439561 LRRC9Q6ZRR7 1453 aa12.28□□□□□ -0.44
COPB1-202ENST00000439561 PAK3O75914 559 aaPredicted RBP12.26□□□□□ -0.45
COPB1-202ENST00000439561 WASHC2AQ641Q2 1341 aa12.26□□□□□ -0.45
COPB1-202ENST00000439561 LAS1LQ9Y4W2 734 aaKnown RBP12.25□□□□□ -0.45
COPB1-202ENST00000439561 IGF1RP08069 1367 aa12.25□□□□□ -0.45
COPB1-202ENST00000439561 TMC1Q8TDI8 760 aa12.22□□□□□ -0.45
COPB1-202ENST00000439561 PRKRIP1Q9H875 184 aaPredicted RBP12.22□□□□□ -0.45
COPB1-202ENST00000439561 DAXXQ9UER7 740 aaPredicted RBP12.22□□□□□ -0.45
COPB1-202ENST00000439561 CCDC18Q5T9S5 1454 aa12.22□□□□□ -0.45
COPB1-202ENST00000439561 L3MBTL2Q969R5 705 aa12.22□□□□□ -0.45
COPB1-202ENST00000439561 ERICH6BQ5W0A0 696 aa12.22□□□□□ -0.45
COPB1-202ENST00000439561 CUX1P39880 1505 aa12.21□□□□□ -0.45
COPB1-202ENST00000439561 TIAM1Q13009 1591 aa12.21□□□□□ -0.45
COPB1-202ENST00000439561 UNC13AQ9UPW8 1703 aa12.19□□□□□ -0.46
COPB1-202ENST00000439561 SLC4A1APQ9BWU0 796 aaKnown RBP12.18□□□□□ -0.46
COPB1-202ENST00000439561 NEFMP07197 916 aa12.17□□□□□ -0.46
COPB1-202ENST00000439561 IPO9Q96P70 1041 aaKnown RBP12.17□□□□□ -0.46
COPB1-202ENST00000439561 ZBED9Q6R2W3 1325 aa12.17□□□□□ -0.46
COPB1-202ENST00000439561 MPHOSPH9Q99550 1183 aa12.16□□□□□ -0.46
COPB1-202ENST00000439561 BICRAQ9NZM4 1560 aa12.16□□□□□ -0.46
COPB1-202ENST00000439561 C11orf95C9JLR9 678 aaPredicted RBP12.15□□□□□ -0.46
COPB1-202ENST00000439561 ZNF777Q9ULD5 760 aaPredicted RBP12.15□□□□□ -0.46
COPB1-202ENST00000439561 FGD6Q6ZV73 1430 aa12.15□□□□□ -0.46
COPB1-202ENST00000439561 EIF5BO60841 1220 aaKnown RBP12.14□□□□□ -0.47
COPB1-202ENST00000439561 FMN1Q68DA7 1419 aa12.14□□□□□ -0.47
COPB1-202ENST00000439561 UACAQ9BZF9 1416 aa12.14□□□□□ -0.47
COPB1-202ENST00000439561 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.14□□□□□ -0.47
COPB1-202ENST00000439561 KDM2AQ9Y2K7 1162 aa12.14□□□□□ -0.47
COPB1-202ENST00000439561 AKNAQ7Z591 1439 aa12.13□□□□□ -0.47
COPB1-202ENST00000439561 ANO8Q9HCE9 1232 aaPredicted RBP12.13□□□□□ -0.47
COPB1-202ENST00000439561 NUDCQ9Y266 331 aa12.13□□□□□ -0.47
COPB1-202ENST00000439561 PEG3Q9GZU2 1588 aa12.12□□□□□ -0.47
COPB1-202ENST00000439561 CNTLNQ9NXG0 1405 aa12.11□□□□□ -0.47
COPB1-202ENST00000439561 CCDC7Q96M83 1385 aa12.11□□□□□ -0.47
COPB1-202ENST00000439561 IL27Q8NEV9 243 aa12.1□□□□□ -0.47
COPB1-202ENST00000439561 KIF7Q2M1P5 1343 aa12.09□□□□□ -0.47
COPB1-202ENST00000439561 BIVM-ERCC5R4GMW8 1640 aa12.09□□□□□ -0.47
COPB1-202ENST00000439561 PCF11O94913 1555 aaKnown RBP12.08□□□□□ -0.48
COPB1-202ENST00000439561 FGD5Q6ZNL6 1462 aa12.08□□□□□ -0.48
COPB1-202ENST00000439561 NBPF8Q3BBV2 869 aa12.07□□□□□ -0.48
COPB1-202ENST00000439561 PTPRKQ15262 1439 aa12.06□□□□□ -0.48
COPB1-202ENST00000439561 EXOC6Q8TAG9 804 aa12.06□□□□□ -0.48
COPB1-202ENST00000439561 HFM1A2PYH4 1435 aa12.06□□□□□ -0.48
COPB1-202ENST00000439561 PRKCSHP14314 528 aaPredicted RBP12.05□□□□□ -0.48
COPB1-202ENST00000439561 NAIPQ13075 1403 aa12.05□□□□□ -0.48
COPB1-202ENST00000439561 AQRO60306 1485 aaKnown RBP eCLIP12.05□□□□□ -0.486e-7■■■■□ 26.6
COPB1-202ENST00000439561 RAD54L2Q9Y4B4 1467 aa12.04□□□□□ -0.48
COPB1-202ENST00000439561 CARD11Q9BXL7 1154 aa12.04□□□□□ -0.48
COPB1-202ENST00000439561 CASKIN1Q8WXD9 1431 aa12.03□□□□□ -0.48
COPB1-202ENST00000439561 TDRD9Q8NDG6 1382 aaKnown RBP12.03□□□□□ -0.48
COPB1-202ENST00000439561 CFTRP13569 1480 aa12.03□□□□□ -0.48
COPB1-202ENST00000439561 MAP3K1Q13233 1512 aa12.02□□□□□ -0.48
COPB1-202ENST00000439561 SLC4A3P48751 1232 aa12.02□□□□□ -0.49
COPB1-202ENST00000439561 MYOM3Q5VTT5 1437 aa12.02□□□□□ -0.49
COPB1-202ENST00000439561 RCAN3Q9UKA8 241 aa12.02□□□□□ -0.49
COPB1-202ENST00000439561 CADPSQ9ULU8 1353 aa12.02□□□□□ -0.49
COPB1-202ENST00000439561 NCOA2Q15596 1464 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms