RNA–Protein interactions for RNA: ENST00000436724.5

PTPRF-207, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 2,168 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-207ENST00000436724 CTTNBP2Q8WZ74 1663 aa32.84■■■□□ 2.85
PTPRF-207ENST00000436724 FHAD1B1AJZ9 1412 aa32.82■■■□□ 2.85
PTPRF-207ENST00000436724 ADAMTS12P58397 1594 aa32.82■■■□□ 2.84
PTPRF-207ENST00000436724 HRCP23327 699 aa32.82■■■□□ 2.84
PTPRF-207ENST00000436724 P3H3Q8IVL6 736 aa32.73■■■□□ 2.83
PTPRF-207ENST00000436724 SNAPC4Q5SXM2 1469 aa32.73■■■□□ 2.83
PTPRF-207ENST00000436724 APLP2Q06481 763 aa32.72■■■□□ 2.83
PTPRF-207ENST00000436724 FHOD3Q2V2M9 1422 aa32.62■■■□□ 2.81
PTPRF-207ENST00000436724 EFCAB5A4FU69 1503 aa32.61■■■□□ 2.81
PTPRF-207ENST00000436724 MAGI1Q96QZ7 1491 aaPredicted RBP32.57■■■□□ 2.8
PTPRF-207ENST00000436724 GRIN2AQ12879 1464 aa32.54■■■□□ 2.8
PTPRF-207ENST00000436724 KANK4Q5T7N3 995 aaPredicted RBP32.52■■■□□ 2.8
PTPRF-207ENST00000436724 SAMD9Q5K651 1589 aa32.51■■■□□ 2.8
PTPRF-207ENST00000436724 IQGAP2Q13576 1575 aa32.5■■■□□ 2.79
PTPRF-207ENST00000436724 CHMP7Q8WUX9 453 aaPredicted RBP32.49■■■□□ 2.79
PTPRF-207ENST00000436724 FBLN2P98095 1184 aa32.48■■■□□ 2.79
PTPRF-207ENST00000436724 SYNJ2O15056 1496 aa32.48■■■□□ 2.79
PTPRF-207ENST00000436724 PCF11O94913 1555 aaKnown RBP32.46■■■□□ 2.79
PTPRF-207ENST00000436724 ATP1B4Q9UN42 357 aaPredicted RBP32.41■■■□□ 2.78
PTPRF-207ENST00000436724 KIAA0586Q9BVV6 1533 aa32.39■■■□□ 2.78
PTPRF-207ENST00000436724 FMN1Q68DA7 1419 aa32.36■■■□□ 2.77
PTPRF-207ENST00000436724 TIAM1Q13009 1591 aa32.35■■■□□ 2.77
PTPRF-207ENST00000436724 CEP170Q5SW79 1584 aa32.35■■■□□ 2.77
PTPRF-207ENST00000436724 CASKIN1Q8WXD9 1431 aa32.33■■■□□ 2.77
PTPRF-207ENST00000436724 FYCO1Q9BQS8 1478 aa32.32■■■□□ 2.77
PTPRF-207ENST00000436724 UGGT2Q9NYU1 1516 aa32.31■■■□□ 2.76
PTPRF-207ENST00000436724 MAP3K1Q13233 1512 aa32.3■■■□□ 2.76
PTPRF-207ENST00000436724 NUP160Q12769 1436 aa32.25■■■□□ 2.75
PTPRF-207ENST00000436724 CFAP43Q8NDM7 1665 aa32.23■■■□□ 2.75
PTPRF-207ENST00000436724 LRRC9Q6ZRR7 1453 aa32.22■■■□□ 2.75
PTPRF-207ENST00000436724 DISP1Q96F81 1524 aa32.21■■■□□ 2.75
PTPRF-207ENST00000436724 KIAA0556O60303 1618 aa32.17■■■□□ 2.74
PTPRF-207ENST00000436724 LRRIQ1Q96JM4 1722 aa32.15■■■□□ 2.74
PTPRF-207ENST00000436724 HNRNPUL2Q1KMD3 747 aaKnown RBP32.12■■■□□ 2.73
PTPRF-207ENST00000436724 CHD1O14646 1710 aa32.12■■■□□ 2.73
PTPRF-207ENST00000436724 JPH4Q96JJ6 628 aa32.11■■■□□ 2.73
PTPRF-207ENST00000436724 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP32.05■■■□□ 2.72
PTPRF-207ENST00000436724 RRBP1Q9P2E9 1410 aaKnown RBP32.04■■■□□ 2.72
PTPRF-207ENST00000436724 PHLDB1Q86UU1 1377 aa32.01■■■□□ 2.71
PTPRF-207ENST00000436724 HECW1Q76N89 1606 aa32■■■□□ 2.71
PTPRF-207ENST00000436724 ARID3CA6NKF2 412 aa31.98■■■□□ 2.71
PTPRF-207ENST00000436724 CCNB3Q8WWL7 1395 aa31.97■■■□□ 2.71
PTPRF-207ENST00000436724 MTUS2Q5JR59 1369 aa31.97■■■□□ 2.71
PTPRF-207ENST00000436724 CARMIL2Q6F5E8 1435 aa31.96■■■□□ 2.71
PTPRF-207ENST00000436724 EPRSP07814 1512 aaKnown RBP31.94■■■□□ 2.7
PTPRF-207ENST00000436724 CCDC18Q5T9S5 1454 aa31.93■■■□□ 2.7
PTPRF-207ENST00000436724 CDK13Q14004 1512 aaKnown RBP31.92■■■□□ 2.7
PTPRF-207ENST00000436724 MAGI3Q5TCQ9 1506 aa31.9■■■□□ 2.7
PTPRF-207ENST00000436724 RAPGEF6Q8TEU7 1601 aa31.88■■■□□ 2.69
PTPRF-207ENST00000436724 CCER1Q8TC90 406 aaPredicted RBP31.88■■■□□ 2.69
PTPRF-207ENST00000436724 PRG4Q92954 1404 aaPredicted RBP31.87■■■□□ 2.69
PTPRF-207ENST00000436724 PLB1Q6P1J6 1458 aa31.86■■■□□ 2.69
PTPRF-207ENST00000436724 NUP153P49790 1475 aaKnown RBP31.86■■■□□ 2.69
PTPRF-207ENST00000436724 EHBP1L1Q8N3D4 1523 aa31.83■■■□□ 2.69
PTPRF-207ENST00000436724 ITGAEP38570 1179 aa31.82■■■□□ 2.68
PTPRF-207ENST00000436724 NCOA2Q15596 1464 aa31.79■■■□□ 2.68
PTPRF-207ENST00000436724 ZEB1P37275 1124 aaPredicted RBP31.78■■■□□ 2.68
PTPRF-207ENST00000436724 SUPT6HQ7KZ85 1726 aaKnown RBP31.77■■■□□ 2.68
PTPRF-207ENST00000436724 FAM50AQ14320 339 aaKnown RBP31.77■■■□□ 2.68
PTPRF-207ENST00000436724 SHROOM2Q13796 1616 aa31.76■■■□□ 2.67
PTPRF-207ENST00000436724 FGD6Q6ZV73 1430 aa31.7■■■□□ 2.67
PTPRF-207ENST00000436724 ERCC6L2Q5T890 1561 aa31.69■■■□□ 2.66
PTPRF-207ENST00000436724 CLASP1Q7Z460 1538 aa31.69■■■□□ 2.66
PTPRF-207ENST00000436724 ARHGEF11O15085 1522 aa31.68■■■□□ 2.66
PTPRF-207ENST00000436724 ABCA8O94911 1581 aa31.68■■■□□ 2.66
PTPRF-207ENST00000436724 PTPRGP23470 1445 aa31.67■■■□□ 2.66
PTPRF-207ENST00000436724 MYOM3Q5VTT5 1437 aa31.66■■■□□ 2.66
PTPRF-207ENST00000436724 CDK11AQ9UQ88 783 aaPredicted RBP31.59■■■□□ 2.65
PTPRF-207ENST00000436724 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP31.58■■■□□ 2.659e-9■□□□□ 10.3
PTPRF-207ENST00000436724 ATP10BO94823 1461 aa31.54■■■□□ 2.64
PTPRF-207ENST00000436724 TROQ12816 1431 aaPredicted RBP31.52■■■□□ 2.64
PTPRF-207ENST00000436724 PTPN23Q9H3S7 1636 aa31.51■■■□□ 2.63
PTPRF-207ENST00000436724 UACAQ9BZF9 1416 aa31.48■■■□□ 2.63
PTPRF-207ENST00000436724 RAB3GAP2Q9H2M9 1393 aa31.44■■■□□ 2.62
PTPRF-207ENST00000436724 KIF14Q15058 1648 aa31.44■■■□□ 2.62
PTPRF-207ENST00000436724 PTPRKQ15262 1439 aa31.43■■■□□ 2.62
PTPRF-207ENST00000436724 PLEKHD1A6NEE1 506 aa31.42■■■□□ 2.62
PTPRF-207ENST00000436724 MIA2Q96PC5 1412 aa31.41■■■□□ 2.62
PTPRF-207ENST00000436724 TCOF1Q13428 1488 aaKnown RBP31.41■■■□□ 2.62
PTPRF-207ENST00000436724 SETD5Q9C0A6 1442 aa31.4■■■□□ 2.62
PTPRF-207ENST00000436724 DHX57Q6P158 1386 aaKnown RBP31.4■■■□□ 2.62
PTPRF-207ENST00000436724 ADCY10Q96PN6 1610 aa31.38■■■□□ 2.61
PTPRF-207ENST00000436724 ABCC2Q92887 1545 aa31.36■■■□□ 2.61
PTPRF-207ENST00000436724 OSCARQ8IYS5 282 aa31.36■■■□□ 2.61
PTPRF-207ENST00000436724 ZNF644Q9H582 1327 aaPredicted RBP31.32■■■□□ 2.6
PTPRF-207ENST00000436724 GPATCH8Q9UKJ3 1502 aaKnown RBP31.3■■■□□ 2.6
PTPRF-207ENST00000436724 CFDP1Q9UEE9 299 aaPredicted RBP31.26■■■□□ 2.59
PTPRF-207ENST00000436724 CHIC2Q9UKJ5 165 aa31.26■■■□□ 2.59
PTPRF-207ENST00000436724 ABCC10Q5T3U5 1492 aa31.24■■■□□ 2.59
PTPRF-207ENST00000436724 ITSN2Q9NZM3 1697 aa31.24■■■□□ 2.59
PTPRF-207ENST00000436724 HFM1A2PYH4 1435 aa31.22■■■□□ 2.59
PTPRF-207ENST00000436724 ZNF777Q9ULD5 760 aaPredicted RBP31.2■■■□□ 2.59
PTPRF-207ENST00000436724 UHRF1BP1LA0JNW5 1464 aa31.2■■■□□ 2.58
PTPRF-207ENST00000436724 CDC42BPAQ5VT25 1732 aa31.2■■■□□ 2.58
PTPRF-207ENST00000436724 NAIPQ13075 1403 aa31.19■■■□□ 2.58
PTPRF-207ENST00000436724 RRP7BPQ9NSQ0 103 aa31.17■■■□□ 2.58
PTPRF-207ENST00000436724 CAMSAP2Q08AD1 1489 aa31.17■■■□□ 2.58
PTPRF-207ENST00000436724 ZCCHC11Q5TAX3 1644 aaKnown RBP31.17■■■□□ 2.58
PTPRF-207ENST00000436724 CLSPNQ9HAW4 1339 aa31.16■■■□□ 2.58
PTPRF-207ENST00000436724 DAPK1P53355 1430 aa31.16■■■□□ 2.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms