RNA–Protein interactions for RNA: ENST00000433297.2

HMGCS1-202, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene HMGCS1, Length 3,466 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-202ENST00000433297 WDR97A6NE52 1622 aa16.11■□□□□ 0.17
HMGCS1-202ENST00000433297 NBR1Q14596 966 aa16.1■□□□□ 0.17
HMGCS1-202ENST00000433297 MAPKBP1O60336 1514 aa16.06■□□□□ 0.16
HMGCS1-202ENST00000433297 SETD5Q9C0A6 1442 aa16.04■□□□□ 0.16
HMGCS1-202ENST00000433297 PRKCSHP14314 528 aaPredicted RBP16.03■□□□□ 0.16
HMGCS1-202ENST00000433297 B4GALNT3Q6L9W6 998 aa16.03■□□□□ 0.16
HMGCS1-202ENST00000433297 CUX2O14529 1486 aa16.01■□□□□ 0.15
HMGCS1-202ENST00000433297 P3H3Q8IVL6 736 aa15.97■□□□□ 0.15
HMGCS1-202ENST00000433297 PPP4R2Q9NY27 417 aa15.97■□□□□ 0.15
HMGCS1-202ENST00000433297 TONSLQ96HA7 1378 aa15.96■□□□□ 0.15
HMGCS1-202ENST00000433297 MYT1LQ9UL68 1186 aa15.95■□□□□ 0.14
HMGCS1-202ENST00000433297 FAM9BQ8IZU0 186 aa15.95■□□□□ 0.14
HMGCS1-202ENST00000433297 PRXQ9BXM0 1461 aa15.94■□□□□ 0.14
HMGCS1-202ENST00000433297 TIMELESSQ9UNS1 1208 aa15.92■□□□□ 0.14
HMGCS1-202ENST00000433297 NOP58Q9Y2X3 529 aaKnown RBP15.92■□□□□ 0.14
HMGCS1-202ENST00000433297 PAK3O75914 559 aaPredicted RBP15.92■□□□□ 0.14
HMGCS1-202ENST00000433297 CNGB1Q14028 1251 aaPredicted RBP15.91■□□□□ 0.14
HMGCS1-202ENST00000433297 ANO8Q9HCE9 1232 aaPredicted RBP15.91■□□□□ 0.14
HMGCS1-202ENST00000433297 ARHGAP35Q9NRY4 1499 aa15.9■□□□□ 0.14
HMGCS1-202ENST00000433297 PHLDB1Q86UU1 1377 aa15.9■□□□□ 0.14
HMGCS1-202ENST00000433297 CCDC184Q52MB2 194 aa15.88■□□□□ 0.13
HMGCS1-202ENST00000433297 ERICH3Q5RHP9 1530 aa15.87■□□□□ 0.13
HMGCS1-202ENST00000433297 RTL5Q5HYW3 569 aaPredicted RBP15.86■□□□□ 0.13
HMGCS1-202ENST00000433297 SENP3-EIF4A1A0A087X0R7 540 aa15.84■□□□□ 0.13
HMGCS1-202ENST00000433297 KIF27Q86VH2 1401 aa15.84■□□□□ 0.13
HMGCS1-202ENST00000433297 RTN4Q9NQC3 1192 aaKnown RBP15.84■□□□□ 0.13
HMGCS1-202ENST00000433297 TOP2BQ02880 1626 aa15.83■□□□□ 0.12
HMGCS1-202ENST00000433297 ERICH6BQ5W0A0 696 aa15.82■□□□□ 0.12
HMGCS1-202ENST00000433297 MRS2Q9HD23 443 aa15.82■□□□□ 0.12
HMGCS1-202ENST00000433297 ATAD2BQ9ULI0 1458 aa15.8■□□□□ 0.12
HMGCS1-202ENST00000433297 ANP32AP39687 249 aaKnown RBP15.8■□□□□ 0.12
HMGCS1-202ENST00000433297 HSPA5P11021 654 aaKnown RBP15.79■□□□□ 0.12
HMGCS1-202ENST00000433297 ZBTB47Q9UFB7 747 aaPredicted RBP15.78■□□□□ 0.12
HMGCS1-202ENST00000433297 SALL2Q9Y467 1007 aaPredicted RBP15.78■□□□□ 0.12
HMGCS1-202ENST00000433297 WASHC2AQ641Q2 1341 aa15.78■□□□□ 0.12
HMGCS1-202ENST00000433297 LRRC9Q6ZRR7 1453 aa15.78■□□□□ 0.12
HMGCS1-202ENST00000433297 CCDC136Q96JN2 1154 aa15.77■□□□□ 0.11
HMGCS1-202ENST00000433297 UNC13AQ9UPW8 1703 aa15.76■□□□□ 0.11
HMGCS1-202ENST00000433297 NPM2Q86SE8 214 aaKnown RBP15.76■□□□□ 0.11
HMGCS1-202ENST00000433297 IL27Q8NEV9 243 aa15.75■□□□□ 0.11
HMGCS1-202ENST00000433297 TIAM1Q13009 1591 aa15.75■□□□□ 0.11
HMGCS1-202ENST00000433297 IPO9Q96P70 1041 aaKnown RBP15.73■□□□□ 0.11
HMGCS1-202ENST00000433297 EIF4G2P78344 907 aaKnown RBP eCLIP15.72■□□□□ 0.11
HMGCS1-202ENST00000433297 POLR3GLQ9BT43 218 aa15.71■□□□□ 0.11
HMGCS1-202ENST00000433297 PRKRIP1Q9H875 184 aaPredicted RBP15.7■□□□□ 0.1
HMGCS1-202ENST00000433297 PEG3Q9GZU2 1588 aa15.69■□□□□ 0.1
HMGCS1-202ENST00000433297 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.69■□□□□ 0.1
HMGCS1-202ENST00000433297 CHIC2Q9UKJ5 165 aa15.68■□□□□ 0.1
HMGCS1-202ENST00000433297 ZBED9Q6R2W3 1325 aa15.67■□□□□ 0.1
HMGCS1-202ENST00000433297 LAS1LQ9Y4W2 734 aaKnown RBP15.67■□□□□ 0.1
HMGCS1-202ENST00000433297 C11orf95C9JLR9 678 aaPredicted RBP15.67■□□□□ 0.1
HMGCS1-202ENST00000433297 CUX1P39880 1505 aa15.67■□□□□ 0.1
HMGCS1-202ENST00000433297 RRP7BPQ9NSQ0 103 aa15.66■□□□□ 0.1
HMGCS1-202ENST00000433297 BIVM-ERCC5R4GMW8 1640 aa15.65■□□□□ 0.1
HMGCS1-202ENST00000433297 CCDC18Q5T9S5 1454 aa15.65■□□□□ 0.1
HMGCS1-202ENST00000433297 IGF1RP08069 1367 aa15.65■□□□□ 0.1
HMGCS1-202ENST00000433297 CARMIL1Q5VZK9 1371 aa15.64■□□□□ 0.09
HMGCS1-202ENST00000433297 AKNAQ7Z591 1439 aa15.64■□□□□ 0.09
HMGCS1-202ENST00000433297 FHAD1B1AJZ9 1412 aa15.63■□□□□ 0.09
HMGCS1-202ENST00000433297 BICRAQ9NZM4 1560 aa15.62■□□□□ 0.09
HMGCS1-202ENST00000433297 FOXD1Q16676 465 aa15.62■□□□□ 0.09
HMGCS1-202ENST00000433297 NEFMP07197 916 aa15.62■□□□□ 0.09
HMGCS1-202ENST00000433297 FHOD3Q2V2M9 1422 aa15.61■□□□□ 0.09
HMGCS1-202ENST00000433297 UACAQ9BZF9 1416 aa15.6■□□□□ 0.09
HMGCS1-202ENST00000433297 CNTLNQ9NXG0 1405 aa15.59■□□□□ 0.09
HMGCS1-202ENST00000433297 MAP3K1Q13233 1512 aa15.59■□□□□ 0.09
HMGCS1-202ENST00000433297 L3MBTL2Q969R5 705 aa15.58■□□□□ 0.09
HMGCS1-202ENST00000433297 MTUS2Q5JR59 1369 aa15.58■□□□□ 0.08
HMGCS1-202ENST00000433297 PTPRKQ15262 1439 aa15.57■□□□□ 0.08
HMGCS1-202ENST00000433297 AQRO60306 1485 aaKnown RBP eCLIP15.56■□□□□ 0.083e-7■■■■■ 29
HMGCS1-202ENST00000433297 NUDCQ9Y266 331 aa15.56■□□□□ 0.08
HMGCS1-202ENST00000433297 FGD6Q6ZV73 1430 aa15.55■□□□□ 0.08
HMGCS1-202ENST00000433297 CCDC7Q96M83 1385 aa15.54■□□□□ 0.08
HMGCS1-202ENST00000433297 PCF11O94913 1555 aaKnown RBP15.53■□□□□ 0.08
HMGCS1-202ENST00000433297 EIF5BO60841 1220 aaKnown RBP15.52■□□□□ 0.08
HMGCS1-202ENST00000433297 HFM1A2PYH4 1435 aa15.51■□□□□ 0.07
HMGCS1-202ENST00000433297 ZNF326Q5BKZ1 582 aaKnown RBP15.51■□□□□ 0.07
HMGCS1-202ENST00000433297 NAIPQ13075 1403 aa15.5■□□□□ 0.07
HMGCS1-202ENST00000433297 KIF7Q2M1P5 1343 aa15.5■□□□□ 0.07
HMGCS1-202ENST00000433297 FMN1Q68DA7 1419 aa15.49■□□□□ 0.07
HMGCS1-202ENST00000433297 NBPF8Q3BBV2 869 aa15.48■□□□□ 0.07
HMGCS1-202ENST00000433297 MPHOSPH9Q99550 1183 aa15.48■□□□□ 0.07
HMGCS1-202ENST00000433297 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.48■□□□□ 0.074e-9■■□□□ 14.1
HMGCS1-202ENST00000433297 SMG6Q86US8 1419 aaKnown RBP15.47■□□□□ 0.07
HMGCS1-202ENST00000433297 TMC1Q8TDI8 760 aa15.47■□□□□ 0.07
HMGCS1-202ENST00000433297 PDE4AP27815 886 aa15.47■□□□□ 0.07
HMGCS1-202ENST00000433297 EXOC6Q8TAG9 804 aa15.46■□□□□ 0.07
HMGCS1-202ENST00000433297 BRPF3Q9ULD4 1205 aa15.46■□□□□ 0.07
HMGCS1-202ENST00000433297 ARID3CA6NKF2 412 aa15.45■□□□□ 0.06
HMGCS1-202ENST00000433297 NCOA2Q15596 1464 aa15.45■□□□□ 0.06
HMGCS1-202ENST00000433297 KDM5BQ9UGL1 1544 aa15.45■□□□□ 0.06
HMGCS1-202ENST00000433297 PTPN23Q9H3S7 1636 aa15.45■□□□□ 0.06
HMGCS1-202ENST00000433297 NCOA1Q15788 1441 aa15.44■□□□□ 0.06
HMGCS1-202ENST00000433297 CASKIN1Q8WXD9 1431 aa15.42■□□□□ 0.06
HMGCS1-202ENST00000433297 SKAP1Q86WV1 359 aa15.42■□□□□ 0.06
HMGCS1-202ENST00000433297 CFAP43Q8NDM7 1665 aa15.42■□□□□ 0.06
HMGCS1-202ENST00000433297 PPM1GO15355 546 aaPredicted RBP15.41■□□□□ 0.06
HMGCS1-202ENST00000433297 SLC4A3P48751 1232 aa15.41■□□□□ 0.06
HMGCS1-202ENST00000433297 TCERG1O14776 1098 aaKnown RBP15.4■□□□□ 0.06
HMGCS1-202ENST00000433297 FYCO1Q9BQS8 1478 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms