RNA–Protein interactions for RNA: ENST00000428704.1

HDAC1-202, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 664 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-202ENST00000428704 FGD5Q6ZNL6 1462 aa15.65■□□□□ 0.1
HDAC1-202ENST00000428704 ERCC6L2Q5T890 1561 aa15.64■□□□□ 0.09
HDAC1-202ENST00000428704 FAM69CQ0P6D2 419 aa15.6■□□□□ 0.09
HDAC1-202ENST00000428704 HOXD11P31277 338 aaPredicted RBP15.59■□□□□ 0.09
HDAC1-202ENST00000428704 KIF13AQ9H1H9 1805 aa15.58■□□□□ 0.08
HDAC1-202ENST00000428704 CEP170Q5SW79 1584 aa15.55■□□□□ 0.08
HDAC1-202ENST00000428704 ABCC10Q5T3U5 1492 aa15.53■□□□□ 0.08
HDAC1-202ENST00000428704 POTEDQ86YR6 584 aa15.53■□□□□ 0.08
HDAC1-202ENST00000428704 PBRM1Q86U86 1689 aa15.51■□□□□ 0.07
HDAC1-202ENST00000428704 KDM6BO15054 1643 aa15.51■□□□□ 0.07
HDAC1-202ENST00000428704 GRIN2AQ12879 1464 aa15.51■□□□□ 0.07
HDAC1-202ENST00000428704 NPM1P06748 294 aaKnown RBP eCLIP15.5■□□□□ 0.07
HDAC1-202ENST00000428704 CUX1P39880 1505 aa15.49■□□□□ 0.07
HDAC1-202ENST00000428704 NUP160Q12769 1436 aa15.48■□□□□ 0.07
HDAC1-202ENST00000428704 DIP2BQ9P265 1576 aa15.44■□□□□ 0.06
HDAC1-202ENST00000428704 SHROOM2Q13796 1616 aa15.43■□□□□ 0.06
HDAC1-202ENST00000428704 PRG4Q92954 1404 aaPredicted RBP15.43■□□□□ 0.06
HDAC1-202ENST00000428704 ABCA5Q8WWZ7 1642 aa15.42■□□□□ 0.06
HDAC1-202ENST00000428704 MAPKBP1O60336 1514 aa15.42■□□□□ 0.06
HDAC1-202ENST00000428704 ABCA10Q8WWZ4 1543 aa15.42■□□□□ 0.06
HDAC1-202ENST00000428704 HECW2Q9P2P5 1572 aa15.41■□□□□ 0.06
HDAC1-202ENST00000428704 ADGRL1O94910 1474 aa15.41■□□□□ 0.06
HDAC1-202ENST00000428704 FBXO41Q8TF61 875 aa15.39■□□□□ 0.05
HDAC1-202ENST00000428704 ADAMTS12P58397 1594 aa15.38■□□□□ 0.05
HDAC1-202ENST00000428704 JPH4Q96JJ6 628 aa15.36■□□□□ 0.05
HDAC1-202ENST00000428704 FHAD1B1AJZ9 1412 aa15.35■□□□□ 0.05
HDAC1-202ENST00000428704 SUPT5HO00267 1087 aaKnown RBP15.35■□□□□ 0.05
HDAC1-202ENST00000428704 TSPOAP1O95153 1857 aa15.3■□□□□ 0.04
HDAC1-202ENST00000428704 ADCY10Q96PN6 1610 aa15.28■□□□□ 0.04
HDAC1-202ENST00000428704 WRNQ14191 1432 aaPredicted RBP eCLIP15.26■□□□□ 0.03
HDAC1-202ENST00000428704 SLC4A1APQ9BWU0 796 aaKnown RBP15.24■□□□□ 0.03
HDAC1-202ENST00000428704 LMTK3Q96Q04 1460 aa15.21■□□□□ 0.03
HDAC1-202ENST00000428704 ERICH3Q5RHP9 1530 aa15.2■□□□□ 0.02
HDAC1-202ENST00000428704 DCAF8L1A6NGE4 600 aa15.18■□□□□ 0.02
HDAC1-202ENST00000428704 RUSC2Q8N2Y8 1516 aa15.17■□□□□ 0.02
HDAC1-202ENST00000428704 COL17A1Q9UMD9 1497 aaPredicted RBP15.14■□□□□ 0.01
HDAC1-202ENST00000428704 ASXL2Q76L83 1435 aa15.12■□□□□ 0.01
HDAC1-202ENST00000428704 PLB1Q6P1J6 1458 aa15.12■□□□□ 0.01
HDAC1-202ENST00000428704 TTBK1Q5TCY1 1321 aaPredicted RBP15.12■□□□□ 0.01
HDAC1-202ENST00000428704 BIVM-ERCC5R4GMW8 1640 aa15.11■□□□□ 0.01
HDAC1-202ENST00000428704 PPRC1Q5VV67 1664 aaKnown RBP15.11■□□□□ 0.01
HDAC1-202ENST00000428704 GLI2P10070 1586 aa15.11■□□□□ 0.01
HDAC1-202ENST00000428704 TOP2BQ02880 1626 aa15.1■□□□□ 0.01
HDAC1-202ENST00000428704 PTPRGP23470 1445 aa15.1■□□□□ 0.01
HDAC1-202ENST00000428704 ABCC2Q92887 1545 aa15.08■□□□□ 0.01
HDAC1-202ENST00000428704 SOCS7O14512 581 aa15.08■□□□□ 0
HDAC1-202ENST00000428704 TEX14Q8IWB6 1497 aa15.08■□□□□ 0
HDAC1-202ENST00000428704 KIAA0586Q9BVV6 1533 aa15.06■□□□□ 0
HDAC1-202ENST00000428704 ILDR2Q71H61 639 aa15.02■□□□□ -0
HDAC1-202ENST00000428704 DISP3Q9P2K9 1392 aa15.01□□□□□ -0.01
HDAC1-202ENST00000428704 EPRSP07814 1512 aaKnown RBP15.01□□□□□ -0.01
HDAC1-202ENST00000428704 TNIKQ9UKE5 1360 aa15□□□□□ -0.01
HDAC1-202ENST00000428704 MAP3K4Q9Y6R4 1608 aa14.98□□□□□ -0.01
HDAC1-202ENST00000428704 CARMIL2Q6F5E8 1435 aa14.98□□□□□ -0.01
HDAC1-202ENST00000428704 UHRF1BP1LA0JNW5 1464 aa14.95□□□□□ -0.02
HDAC1-202ENST00000428704 UACAQ9BZF9 1416 aa14.94□□□□□ -0.02
HDAC1-202ENST00000428704 CUL7Q14999 1698 aa14.93□□□□□ -0.02
HDAC1-202ENST00000428704 PTPRMP28827 1452 aa14.91□□□□□ -0.02
HDAC1-202ENST00000428704 KDM5BQ9UGL1 1544 aa14.89□□□□□ -0.03
HDAC1-202ENST00000428704 KIF21BO75037 1637 aa14.88□□□□□ -0.03
HDAC1-202ENST00000428704 CERKQ8TCT0 537 aa14.88□□□□□ -0.03
HDAC1-202ENST00000428704 PCF11O94913 1555 aaKnown RBP14.87□□□□□ -0.03
HDAC1-202ENST00000428704 IGF1RP08069 1367 aa14.86□□□□□ -0.03
HDAC1-202ENST00000428704 SLC4A2P04920 1241 aa14.86□□□□□ -0.03
HDAC1-202ENST00000428704 CD109Q6YHK3 1445 aa14.85□□□□□ -0.03
HDAC1-202ENST00000428704 WDR7Q9Y4E6 1490 aa14.85□□□□□ -0.03
HDAC1-202ENST00000428704 MAGI3Q5TCQ9 1506 aa14.84□□□□□ -0.03
HDAC1-202ENST00000428704 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.83□□□□□ -0.042e-8■■□□□ 13.8
HDAC1-202ENST00000428704 ZCCHC11Q5TAX3 1644 aaKnown RBP14.83□□□□□ -0.04
HDAC1-202ENST00000428704 HSPA2P54652 639 aa14.8□□□□□ -0.04
HDAC1-202ENST00000428704 KCNH8Q96L42 1107 aa14.8□□□□□ -0.04
HDAC1-202ENST00000428704 ADAMTSL3P82987 1691 aa14.79□□□□□ -0.04
HDAC1-202ENST00000428704 KIF27Q86VH2 1401 aa14.79□□□□□ -0.04
HDAC1-202ENST00000428704 IQGAP2Q13576 1575 aa14.78□□□□□ -0.04
HDAC1-202ENST00000428704 DISP1Q96F81 1524 aa14.78□□□□□ -0.04
HDAC1-202ENST00000428704 ARID4BQ4LE39 1312 aaPredicted RBP14.78□□□□□ -0.04
HDAC1-202ENST00000428704 EHMT2Q96KQ7 1210 aa14.77□□□□□ -0.05
HDAC1-202ENST00000428704 SPATA31D1Q6ZQQ2 1576 aa14.77□□□□□ -0.05
HDAC1-202ENST00000428704 CARMIL1Q5VZK9 1371 aa14.76□□□□□ -0.05
HDAC1-202ENST00000428704 FOXD4L1Q9NU39 408 aa14.75□□□□□ -0.05
HDAC1-202ENST00000428704 CFAP43Q8NDM7 1665 aa14.74□□□□□ -0.05
HDAC1-202ENST00000428704 ARAP3Q8WWN8 1544 aa14.73□□□□□ -0.05
HDAC1-202ENST00000428704 ZBTB22O15209 634 aa14.72□□□□□ -0.05
HDAC1-202ENST00000428704 MADDQ8WXG6 1647 aa14.72□□□□□ -0.05
HDAC1-202ENST00000428704 BCORL1Q5H9F3 1711 aa14.69□□□□□ -0.06
HDAC1-202ENST00000428704 RAPGEF3O95398 923 aa14.68□□□□□ -0.06
HDAC1-202ENST00000428704 UGGT2Q9NYU1 1516 aa14.66□□□□□ -0.06
HDAC1-202ENST00000428704 PHLDB1Q86UU1 1377 aa14.66□□□□□ -0.06
HDAC1-202ENST00000428704 KIAA0556O60303 1618 aa14.66□□□□□ -0.06
HDAC1-202ENST00000428704 CSRNP3Q8WYN3 585 aa14.65□□□□□ -0.06
HDAC1-202ENST00000428704 RIMS1Q86UR5 1692 aaKnown RBP14.63□□□□□ -0.07
HDAC1-202ENST00000428704 RNF39Q9H2S5 420 aa14.62□□□□□ -0.07
HDAC1-202ENST00000428704 U3KPZ7 1027 aaPredicted RBP14.6□□□□□ -0.07
HDAC1-202ENST00000428704 ARID3CA6NKF2 412 aa14.57□□□□□ -0.08
HDAC1-202ENST00000428704 POGZQ7Z3K3 1410 aa14.57□□□□□ -0.08
HDAC1-202ENST00000428704 NEO1Q92859 1461 aa14.57□□□□□ -0.08
HDAC1-202ENST00000428704 ABCA8O94911 1581 aa14.56□□□□□ -0.08
HDAC1-202ENST00000428704 YEATS2Q9ULM3 1422 aa14.55□□□□□ -0.08
HDAC1-202ENST00000428704 MYCNP04198 464 aaPredicted RBP14.54□□□□□ -0.08
HDAC1-202ENST00000428704 ARHGEF40Q8TER5 1519 aa14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms