RNA–Protein interactions for RNA: ENST00000428307.6

HDAC9-210, Transcript of histone deacetylase 9, humanhuman

TSL 2 BASIC

Gene HDAC9, Length 2,359 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC9-210ENST00000428307 ATP1B4Q9UN42 357 aaPredicted RBP15.8■□□□□ 0.12
HDAC9-210ENST00000428307 CUL7Q14999 1698 aa15.8■□□□□ 0.12
HDAC9-210ENST00000428307 FHOD3Q2V2M9 1422 aa15.75■□□□□ 0.11
HDAC9-210ENST00000428307 ZNF608Q9ULD9 1512 aaPredicted RBP15.73■□□□□ 0.11
HDAC9-210ENST00000428307 WDR62O43379 1518 aa15.72■□□□□ 0.11
HDAC9-210ENST00000428307 FHAD1B1AJZ9 1412 aa15.71■□□□□ 0.11
HDAC9-210ENST00000428307 IFT140Q96RY7 1462 aa15.71■□□□□ 0.11
HDAC9-210ENST00000428307 GRIN2BQ13224 1484 aa15.68■□□□□ 0.1
HDAC9-210ENST00000428307 CTTNBP2Q8WZ74 1663 aa15.65■□□□□ 0.1
HDAC9-210ENST00000428307 EFCAB5A4FU69 1503 aa15.65■□□□□ 0.1
HDAC9-210ENST00000428307 TIAM1Q13009 1591 aa15.63■□□□□ 0.09
HDAC9-210ENST00000428307 ITGAEP38570 1179 aa15.63■□□□□ 0.09
HDAC9-210ENST00000428307 PBRM1Q86U86 1689 aa15.62■□□□□ 0.09
HDAC9-210ENST00000428307 PCF11O94913 1555 aaKnown RBP15.62■□□□□ 0.09
HDAC9-210ENST00000428307 FMN1Q68DA7 1419 aa15.62■□□□□ 0.09
HDAC9-210ENST00000428307 LRRC9Q6ZRR7 1453 aa15.61■□□□□ 0.09
HDAC9-210ENST00000428307 CCNB3Q8WWL7 1395 aa15.61■□□□□ 0.09
HDAC9-210ENST00000428307 CASKIN1Q8WXD9 1431 aa15.61■□□□□ 0.09
HDAC9-210ENST00000428307 MAP3K1Q13233 1512 aa15.6■□□□□ 0.09
HDAC9-210ENST00000428307 RRBP1Q9P2E9 1410 aaKnown RBP15.6■□□□□ 0.09
HDAC9-210ENST00000428307 ADAMTS12P58397 1594 aa15.6■□□□□ 0.09
HDAC9-210ENST00000428307 FBLN2P98095 1184 aa15.6■□□□□ 0.09
HDAC9-210ENST00000428307 THOC2Q8NI27 1593 aaKnown RBP15.59■□□□□ 0.09
HDAC9-210ENST00000428307 SNAPC4Q5SXM2 1469 aa15.59■□□□□ 0.09
HDAC9-210ENST00000428307 FYCO1Q9BQS8 1478 aa15.58■□□□□ 0.08
HDAC9-210ENST00000428307 CHMP7Q8WUX9 453 aaPredicted RBP15.57■□□□□ 0.08
HDAC9-210ENST00000428307 PHLDB1Q86UU1 1377 aa15.56■□□□□ 0.08
HDAC9-210ENST00000428307 SAMD9Q5K651 1589 aa15.55■□□□□ 0.08
HDAC9-210ENST00000428307 EIF4G3O43432 1585 aaKnown RBP15.55■□□□□ 0.08
HDAC9-210ENST00000428307 FAM50AQ14320 339 aaKnown RBP15.54■□□□□ 0.08
HDAC9-210ENST00000428307 IQGAP2Q13576 1575 aa15.53■□□□□ 0.08
HDAC9-210ENST00000428307 MTUS2Q5JR59 1369 aa15.51■□□□□ 0.07
HDAC9-210ENST00000428307 ARID3CA6NKF2 412 aa15.5■□□□□ 0.07
HDAC9-210ENST00000428307 GRIN2AQ12879 1464 aa15.5■□□□□ 0.07
HDAC9-210ENST00000428307 KIAA0586Q9BVV6 1533 aa15.48■□□□□ 0.07
HDAC9-210ENST00000428307 CFAP43Q8NDM7 1665 aa15.48■□□□□ 0.07
HDAC9-210ENST00000428307 MAGI1Q96QZ7 1491 aaPredicted RBP15.47■□□□□ 0.07
HDAC9-210ENST00000428307 SYNJ2O15056 1496 aa15.45■□□□□ 0.06
HDAC9-210ENST00000428307 UGGT2Q9NYU1 1516 aa15.44■□□□□ 0.06
HDAC9-210ENST00000428307 DHX57Q6P158 1386 aaKnown RBP15.42■□□□□ 0.06
HDAC9-210ENST00000428307 AEBP2Q6ZN18 517 aaPredicted RBP15.41■□□□□ 0.06
HDAC9-210ENST00000428307 DISP1Q96F81 1524 aa15.41■□□□□ 0.06
HDAC9-210ENST00000428307 JPH4Q96JJ6 628 aa15.41■□□□□ 0.06
HDAC9-210ENST00000428307 RAB3GAP2Q9H2M9 1393 aa15.38■□□□□ 0.05
HDAC9-210ENST00000428307 LRRIQ1Q96JM4 1722 aa15.38■□□□□ 0.05
HDAC9-210ENST00000428307 CEP170Q5SW79 1584 aa15.38■□□□□ 0.05
HDAC9-210ENST00000428307 NCOA2Q15596 1464 aa15.37■□□□□ 0.05
HDAC9-210ENST00000428307 FGD6Q6ZV73 1430 aa15.37■□□□□ 0.05
HDAC9-210ENST00000428307 EPRSP07814 1512 aaKnown RBP15.37■□□□□ 0.05
HDAC9-210ENST00000428307 CCDC18Q5T9S5 1454 aa15.36■□□□□ 0.05
HDAC9-210ENST00000428307 CDK13Q14004 1512 aaKnown RBP15.35■□□□□ 0.05
HDAC9-210ENST00000428307 KIAA0556O60303 1618 aa15.35■□□□□ 0.05
HDAC9-210ENST00000428307 MAGI3Q5TCQ9 1506 aa15.35■□□□□ 0.05
HDAC9-210ENST00000428307 NUP160Q12769 1436 aa15.35■□□□□ 0.05
HDAC9-210ENST00000428307 SETD5Q9C0A6 1442 aa15.35■□□□□ 0.05
HDAC9-210ENST00000428307 HECW1Q76N89 1606 aa15.34■□□□□ 0.05
HDAC9-210ENST00000428307 CLSPNQ9HAW4 1339 aa15.33■□□□□ 0.04
HDAC9-210ENST00000428307 EHBP1L1Q8N3D4 1523 aa15.32■□□□□ 0.04
HDAC9-210ENST00000428307 MYOM3Q5VTT5 1437 aa15.32■□□□□ 0.04
HDAC9-210ENST00000428307 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.32■□□□□ 0.04
HDAC9-210ENST00000428307 CARMIL2Q6F5E8 1435 aa15.3■□□□□ 0.04
HDAC9-210ENST00000428307 NUP153P49790 1475 aaKnown RBP15.29■□□□□ 0.04
HDAC9-210ENST00000428307 PLB1Q6P1J6 1458 aa15.28■□□□□ 0.04
HDAC9-210ENST00000428307 SUPT6HQ7KZ85 1726 aaKnown RBP15.28■□□□□ 0.04
HDAC9-210ENST00000428307 CDK11AQ9UQ88 783 aaPredicted RBP15.28■□□□□ 0.04
HDAC9-210ENST00000428307 ZNF316A6NFI3 1004 aaPredicted RBP15.27■□□□□ 0.04
HDAC9-210ENST00000428307 PTPRKQ15262 1439 aa15.27■□□□□ 0.04
HDAC9-210ENST00000428307 DIEXFQ68CQ4 756 aaKnown RBP15.25■□□□□ 0.03
HDAC9-210ENST00000428307 CHIC2Q9UKJ5 165 aa15.25■□□□□ 0.03
HDAC9-210ENST00000428307 ARHGEF11O15085 1522 aa15.25■□□□□ 0.03
HDAC9-210ENST00000428307 RAPGEF6Q8TEU7 1601 aa15.24■□□□□ 0.03
HDAC9-210ENST00000428307 PRG4Q92954 1404 aaPredicted RBP15.22■□□□□ 0.03
HDAC9-210ENST00000428307 RRP7BPQ9NSQ0 103 aa15.21■□□□□ 0.03
HDAC9-210ENST00000428307 PTPN23Q9H3S7 1636 aa15.2■□□□□ 0.02
HDAC9-210ENST00000428307 NEUROD1Q13562 356 aa15.19■□□□□ 0.02
HDAC9-210ENST00000428307 SIN3AQ96ST3 1273 aa15.19■□□□□ 0.02
HDAC9-210ENST00000428307 ZNF644Q9H582 1327 aaPredicted RBP15.19■□□□□ 0.02
HDAC9-210ENST00000428307 MAPKBP1O60336 1514 aa15.18■□□□□ 0.02
HDAC9-210ENST00000428307 HFM1A2PYH4 1435 aa15.17■□□□□ 0.02
HDAC9-210ENST00000428307 PTPRGP23470 1445 aa15.17■□□□□ 0.02
HDAC9-210ENST00000428307 MIA2Q96PC5 1412 aa15.17■□□□□ 0.02
HDAC9-210ENST00000428307 PLEKHD1A6NEE1 506 aa15.17■□□□□ 0.02
HDAC9-210ENST00000428307 NAIPQ13075 1403 aa15.16■□□□□ 0.02
HDAC9-210ENST00000428307 TCOF1Q13428 1488 aaKnown RBP15.16■□□□□ 0.02
HDAC9-210ENST00000428307 TROQ12816 1431 aaPredicted RBP15.15■□□□□ 0.02
HDAC9-210ENST00000428307 CFDP1Q9UEE9 299 aaPredicted RBP15.14■□□□□ 0.01
HDAC9-210ENST00000428307 ZNF777Q9ULD5 760 aaPredicted RBP15.14■□□□□ 0.01
HDAC9-210ENST00000428307 CHD1O14646 1710 aa15.13■□□□□ 0.01
HDAC9-210ENST00000428307 ATP10BO94823 1461 aa15.12■□□□□ 0.01
HDAC9-210ENST00000428307 ABCA8O94911 1581 aa15.1■□□□□ 0.01
HDAC9-210ENST00000428307 TRIM52Q96A61 297 aa15.1■□□□□ 0.01
HDAC9-210ENST00000428307 UACAQ9BZF9 1416 aa15.08■□□□□ 0.01
HDAC9-210ENST00000428307 GPATCH8Q9UKJ3 1502 aaKnown RBP15.07■□□□□ 0
HDAC9-210ENST00000428307 ABCC5O15440 1437 aa15.06■□□□□ 0
HDAC9-210ENST00000428307 DAPK1P53355 1430 aa15.06■□□□□ 0
HDAC9-210ENST00000428307 KIF14Q15058 1648 aa15.06■□□□□ 0
HDAC9-210ENST00000428307 ERCC6L2Q5T890 1561 aa15.05■□□□□ -0
HDAC9-210ENST00000428307 CAMSAP2Q08AD1 1489 aa15.02□□□□□ -0.01
HDAC9-210ENST00000428307 AKNAQ7Z591 1439 aa15.01□□□□□ -0.01
HDAC9-210ENST00000428307 TIMELESSQ9UNS1 1208 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.5 ms