RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 HNRNPUQ00839 825 aaKnown RBP eCLIP12.25□□□□□ -0.45
USP40-203ENST00000427112 ANP32CO43423 234 aa12.24□□□□□ -0.45
USP40-203ENST00000427112 ZNF326Q5BKZ1 582 aaKnown RBP12.23□□□□□ -0.45
USP40-203ENST00000427112 FAM9BQ8IZU0 186 aa12.22□□□□□ -0.45
USP40-203ENST00000427112 CUX2O14529 1486 aa12.21□□□□□ -0.45
USP40-203ENST00000427112 PHLDB1Q86UU1 1377 aa12.2□□□□□ -0.46
USP40-203ENST00000427112 KIF27Q86VH2 1401 aa12.19□□□□□ -0.46
USP40-203ENST00000427112 FHOD3Q2V2M9 1422 aa12.17□□□□□ -0.46
USP40-203ENST00000427112 ARHGAP35Q9NRY4 1499 aa12.16□□□□□ -0.46
USP40-203ENST00000427112 RBM19Q9Y4C8 960 aaKnown RBP12.15□□□□□ -0.46
USP40-203ENST00000427112 CCDC184Q52MB2 194 aa12.15□□□□□ -0.46
USP40-203ENST00000427112 WDR97A6NE52 1622 aa12.14□□□□□ -0.47
USP40-203ENST00000427112 TONSLQ96HA7 1378 aa12.14□□□□□ -0.47
USP40-203ENST00000427112 ANP32EQ9BTT0 268 aa12.14□□□□□ -0.47
USP40-203ENST00000427112 BCL11AQ9H165 835 aa12.14□□□□□ -0.47
USP40-203ENST00000427112 SALL2Q9Y467 1007 aaPredicted RBP12.14□□□□□ -0.47
USP40-203ENST00000427112 CARMIL1Q5VZK9 1371 aa12.14□□□□□ -0.47
USP40-203ENST00000427112 CUX1P39880 1505 aa12.13□□□□□ -0.47
USP40-203ENST00000427112 SETD5Q9C0A6 1442 aa12.12□□□□□ -0.47
USP40-203ENST00000427112 PRXQ9BXM0 1461 aa12.11□□□□□ -0.47
USP40-203ENST00000427112 PPP1R15AO75807 674 aaPredicted RBP12.11□□□□□ -0.47
USP40-203ENST00000427112 IGF1RP08069 1367 aa12.11□□□□□ -0.47
USP40-203ENST00000427112 B4GALNT3Q6L9W6 998 aa12.1□□□□□ -0.47
USP40-203ENST00000427112 CLSPNQ9HAW4 1339 aa12.07□□□□□ -0.48
USP40-203ENST00000427112 RAD54L2Q9Y4B4 1467 aa12.07□□□□□ -0.48
USP40-203ENST00000427112 ZNF777Q9ULD5 760 aaPredicted RBP12.06□□□□□ -0.48
USP40-203ENST00000427112 MTUS2Q5JR59 1369 aa12.06□□□□□ -0.48
USP40-203ENST00000427112 TDRD9Q8NDG6 1382 aaKnown RBP12.06□□□□□ -0.48
USP40-203ENST00000427112 RRBP1Q9P2E9 1410 aaKnown RBP12.06□□□□□ -0.48
USP40-203ENST00000427112 TOP2BQ02880 1626 aa12.06□□□□□ -0.48
USP40-203ENST00000427112 HSPA5P11021 654 aaKnown RBP12.05□□□□□ -0.48
USP40-203ENST00000427112 MAPKBP1O60336 1514 aa12.04□□□□□ -0.48
USP40-203ENST00000427112 NBR1Q14596 966 aa12.04□□□□□ -0.48
USP40-203ENST00000427112 MRS2Q9HD23 443 aa12.02□□□□□ -0.48
USP40-203ENST00000427112 MSH5O43196 834 aa12.02□□□□□ -0.49
USP40-203ENST00000427112 FBLN2P98095 1184 aa12□□□□□ -0.49
USP40-203ENST00000427112 C11orf95C9JLR9 678 aaPredicted RBP12□□□□□ -0.49
USP40-203ENST00000427112 CDK11AQ9UQ88 783 aaPredicted RBP11.99□□□□□ -0.49
USP40-203ENST00000427112 FGD5Q6ZNL6 1462 aa11.99□□□□□ -0.49
USP40-203ENST00000427112 KDM2AQ9Y2K7 1162 aa11.98□□□□□ -0.49
USP40-203ENST00000427112 LRRC9Q6ZRR7 1453 aa11.98□□□□□ -0.49
USP40-203ENST00000427112 NESP48681 1621 aa11.97□□□□□ -0.49
USP40-203ENST00000427112 L3MBTL2Q969R5 705 aa11.97□□□□□ -0.49
USP40-203ENST00000427112 NPM2Q86SE8 214 aaKnown RBP11.96□□□□□ -0.49
USP40-203ENST00000427112 ZNF644Q9H582 1327 aaPredicted RBP11.96□□□□□ -0.49
USP40-203ENST00000427112 WASHC2AQ641Q2 1341 aa11.96□□□□□ -0.5
USP40-203ENST00000427112 PTPRKQ15262 1439 aa11.94□□□□□ -0.5
USP40-203ENST00000427112 AQRO60306 1485 aaKnown RBP eCLIP11.93□□□□□ -0.5
USP40-203ENST00000427112 EIF4G2P78344 907 aaKnown RBP eCLIP11.92□□□□□ -0.5
USP40-203ENST00000427112 ERICH3Q5RHP9 1530 aa11.92□□□□□ -0.5
USP40-203ENST00000427112 TIAM1Q13009 1591 aa11.91□□□□□ -0.5
USP40-203ENST00000427112 SLC4A1APQ9BWU0 796 aaKnown RBP11.91□□□□□ -0.5
USP40-203ENST00000427112 CADPSQ9ULU8 1353 aa11.9□□□□□ -0.5
USP40-203ENST00000427112 PEG3Q9GZU2 1588 aa11.9□□□□□ -0.5
USP40-203ENST00000427112 NCAPD3P42695 1498 aa11.9□□□□□ -0.5
USP40-203ENST00000427112 CCDC18Q5T9S5 1454 aa11.89□□□□□ -0.51
USP40-203ENST00000427112 NBPF8Q3BBV2 869 aa11.89□□□□□ -0.51
USP40-203ENST00000427112 EIF5BO60841 1220 aaKnown RBP11.89□□□□□ -0.51
USP40-203ENST00000427112 PCF11O94913 1555 aaKnown RBP11.89□□□□□ -0.51
USP40-203ENST00000427112 CFTRP13569 1480 aa11.89□□□□□ -0.51
USP40-203ENST00000427112 MPHOSPH9Q99550 1183 aa11.88□□□□□ -0.51
USP40-203ENST00000427112 CCER2I3L3R5 266 aa11.88□□□□□ -0.51
USP40-203ENST00000427112 SKAP1Q86WV1 359 aa11.88□□□□□ -0.51
USP40-203ENST00000427112 FHAD1B1AJZ9 1412 aa11.86□□□□□ -0.51
USP40-203ENST00000427112 BIVM-ERCC5R4GMW8 1640 aa11.85□□□□□ -0.51
USP40-203ENST00000427112 SENP3Q9H4L4 574 aaPredicted RBP11.85□□□□□ -0.51
USP40-203ENST00000427112 FGD6Q6ZV73 1430 aa11.85□□□□□ -0.51
USP40-203ENST00000427112 RGL3Q3MIN7 710 aa11.84□□□□□ -0.51
USP40-203ENST00000427112 FANCD2Q9BXW9 1451 aa11.84□□□□□ -0.51
USP40-203ENST00000427112 HMGXB3Q12766 1538 aa11.83□□□□□ -0.52
USP40-203ENST00000427112 DNAJC5Q9H3Z4 198 aa11.83□□□□□ -0.52
USP40-203ENST00000427112 PAK3O75914 559 aaPredicted RBP11.83□□□□□ -0.52
USP40-203ENST00000427112 PRKRIP1Q9H875 184 aaPredicted RBP11.82□□□□□ -0.52
USP40-203ENST00000427112 CCDC136Q96JN2 1154 aa11.82□□□□□ -0.52
USP40-203ENST00000427112 PRKCSHP14314 528 aaPredicted RBP11.81□□□□□ -0.52
USP40-203ENST00000427112 RTN4Q9NQC3 1192 aaKnown RBP11.81□□□□□ -0.52
USP40-203ENST00000427112 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.81□□□□□ -0.521e-6■■■□□ 15.3
USP40-203ENST00000427112 AKNAQ7Z591 1439 aa11.79□□□□□ -0.52
USP40-203ENST00000427112 TMC1Q8TDI8 760 aa11.78□□□□□ -0.52
USP40-203ENST00000427112 PPP4R2Q9NY27 417 aa11.78□□□□□ -0.52
USP40-203ENST00000427112 LAS1LQ9Y4W2 734 aaKnown RBP11.78□□□□□ -0.52
USP40-203ENST00000427112 NCOA2Q15596 1464 aa11.78□□□□□ -0.52
USP40-203ENST00000427112 NAIPQ13075 1403 aa11.78□□□□□ -0.52
USP40-203ENST00000427112 PDS5BQ9NTI5 1447 aa11.77□□□□□ -0.52
USP40-203ENST00000427112 KIF7Q2M1P5 1343 aa11.77□□□□□ -0.53
USP40-203ENST00000427112 POLA1P09884 1462 aaPredicted RBP11.76□□□□□ -0.53
USP40-203ENST00000427112 PLIN1O60240 522 aa11.76□□□□□ -0.53
USP40-203ENST00000427112 PKD2Q13563 968 aa11.75□□□□□ -0.53
USP40-203ENST00000427112 DEKP35659 375 aaKnown RBP11.74□□□□□ -0.53
USP40-203ENST00000427112 CC2D1BQ5T0F9 858 aaKnown RBP11.74□□□□□ -0.53
USP40-203ENST00000427112 UACAQ9BZF9 1416 aa11.74□□□□□ -0.53
USP40-203ENST00000427112 CDK13Q14004 1512 aaKnown RBP11.73□□□□□ -0.53
USP40-203ENST00000427112 FMN1Q68DA7 1419 aa11.73□□□□□ -0.53
USP40-203ENST00000427112 TIMELESSQ9UNS1 1208 aa11.73□□□□□ -0.53
USP40-203ENST00000427112 CASKIN1Q8WXD9 1431 aa11.72□□□□□ -0.53
USP40-203ENST00000427112 CFDP1Q9UEE9 299 aaPredicted RBP11.72□□□□□ -0.53
USP40-203ENST00000427112 DCAF11Q8TEB1 546 aa11.72□□□□□ -0.53
USP40-203ENST00000427112 CARD11Q9BXL7 1154 aa11.72□□□□□ -0.53
USP40-203ENST00000427112 CCDC7Q96M83 1385 aa11.71□□□□□ -0.53
USP40-203ENST00000427112 MYOM3Q5VTT5 1437 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 88.5 ms