RNA–Protein interactions for RNA: ENST00000417448.1

VCP-202, Transcript of valosin containing protein, humanhuman

TSL 3

Gene VCP, Length 722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-202ENST00000417448 FAM69CQ0P6D2 419 aa32.3■■■□□ 2.76
VCP-202ENST00000417448 RUSC2Q8N2Y8 1516 aa32.3■■■□□ 2.76
VCP-202ENST00000417448 JPH4Q96JJ6 628 aa32.29■■■□□ 2.76
VCP-202ENST00000417448 MAPKBP1O60336 1514 aa32.29■■■□□ 2.76
VCP-202ENST00000417448 ADCY10Q96PN6 1610 aa32.25■■■□□ 2.75
VCP-202ENST00000417448 KDM4FA0A1W2PPD8 638 aa32.21■■■□□ 2.75
VCP-202ENST00000417448 KDM6BO15054 1643 aa32.19■■■□□ 2.74
VCP-202ENST00000417448 TSPOAP1O95153 1857 aa32.14■■■□□ 2.74
VCP-202ENST00000417448 NPM1P06748 294 aaKnown RBP eCLIP32.13■■■□□ 2.73
VCP-202ENST00000417448 SUPT5HO00267 1087 aaKnown RBP32.12■■■□□ 2.73
VCP-202ENST00000417448 ILDR1Q86SU0 546 aaPredicted RBP31.98■■■□□ 2.71
VCP-202ENST00000417448 KIAA0586Q9BVV6 1533 aa31.95■■■□□ 2.71
VCP-202ENST00000417448 PPRC1Q5VV67 1664 aaKnown RBP31.87■■■□□ 2.69
VCP-202ENST00000417448 CUL7Q14999 1698 aa31.81■■■□□ 2.68
VCP-202ENST00000417448 IGF1RP08069 1367 aa31.8■■■□□ 2.68
VCP-202ENST00000417448 ADGRL1O94910 1474 aa31.78■■■□□ 2.68
VCP-202ENST00000417448 PTPRGP23470 1445 aa31.77■■■□□ 2.68
VCP-202ENST00000417448 ABCC2Q92887 1545 aa31.76■■■□□ 2.68
VCP-202ENST00000417448 GLI2P10070 1586 aa31.75■■■□□ 2.67
VCP-202ENST00000417448 ASXL2Q76L83 1435 aa31.73■■■□□ 2.67
VCP-202ENST00000417448 TTBK1Q5TCY1 1321 aaPredicted RBP31.71■■■□□ 2.67
VCP-202ENST00000417448 KIF27Q86VH2 1401 aa31.68■■■□□ 2.66
VCP-202ENST00000417448 PLB1Q6P1J6 1458 aa31.67■■■□□ 2.66
VCP-202ENST00000417448 COL17A1Q9UMD9 1497 aaPredicted RBP31.67■■■□□ 2.66
VCP-202ENST00000417448 TNIKQ9UKE5 1360 aa31.66■■■□□ 2.66
VCP-202ENST00000417448 HECW2Q9P2P5 1572 aa31.62■■■□□ 2.65
VCP-202ENST00000417448 UHRF1BP1LA0JNW5 1464 aa31.61■■■□□ 2.65
VCP-202ENST00000417448 CARMIL2Q6F5E8 1435 aa31.6■■■□□ 2.65
VCP-202ENST00000417448 MAP3K4Q9Y6R4 1608 aa31.6■■■□□ 2.65
VCP-202ENST00000417448 IQGAP2Q13576 1575 aa31.57■■■□□ 2.64
VCP-202ENST00000417448 EPRSP07814 1512 aaKnown RBP31.55■■■□□ 2.64
VCP-202ENST00000417448 CARMIL1Q5VZK9 1371 aa31.55■■■□□ 2.64
VCP-202ENST00000417448 UACAQ9BZF9 1416 aa31.53■■■□□ 2.64
VCP-202ENST00000417448 DISP1Q96F81 1524 aa31.51■■■□□ 2.63
VCP-202ENST00000417448 KDM5BQ9UGL1 1544 aa31.49■■■□□ 2.63
VCP-202ENST00000417448 ZCCHC11Q5TAX3 1644 aaKnown RBP31.48■■■□□ 2.63
VCP-202ENST00000417448 TEX14Q8IWB6 1497 aa31.45■■■□□ 2.62
VCP-202ENST00000417448 UGGT2Q9NYU1 1516 aa31.34■■■□□ 2.61
VCP-202ENST00000417448 KIAA0556O60303 1618 aa31.33■■■□□ 2.61
VCP-202ENST00000417448 WDR7Q9Y4E6 1490 aa31.29■■■□□ 2.6
VCP-202ENST00000417448 CFAP43Q8NDM7 1665 aa31.22■■■□□ 2.59
VCP-202ENST00000417448 MAGI3Q5TCQ9 1506 aa31.19■■■□□ 2.58
VCP-202ENST00000417448 KIF21BO75037 1637 aa31.19■■■□□ 2.58
VCP-202ENST00000417448 RAPGEF2Q9Y4G8 1499 aa31.18■■■□□ 2.58
VCP-202ENST00000417448 CD109Q6YHK3 1445 aa31.15■■■□□ 2.58
VCP-202ENST00000417448 ABCA8O94911 1581 aa31.09■■■□□ 2.57
VCP-202ENST00000417448 CTTNBP2Q8WZ74 1663 aa31.07■■■□□ 2.56
VCP-202ENST00000417448 FBXO41Q8TF61 875 aa31.05■■■□□ 2.56
VCP-202ENST00000417448 KCNH8Q96L42 1107 aa31.05■■■□□ 2.56
VCP-202ENST00000417448 ARAP3Q8WWN8 1544 aa30.98■■■□□ 2.55
VCP-202ENST00000417448 ADAMTSL3P82987 1691 aa30.97■■■□□ 2.55
VCP-202ENST00000417448 GOLGA3Q08378 1498 aa30.94■■■□□ 2.54
VCP-202ENST00000417448 PTPRMP28827 1452 aa30.93■■■□□ 2.54
VCP-202ENST00000417448 ABCA9Q8IUA7 1624 aa30.84■■■□□ 2.53
VCP-202ENST00000417448 BCORL1Q5H9F3 1711 aa30.81■■■□□ 2.52
VCP-202ENST00000417448 MADDQ8WXG6 1647 aa30.8■■■□□ 2.52
VCP-202ENST00000417448 ATP10BO94823 1461 aa30.79■■■□□ 2.52
VCP-202ENST00000417448 ARID3CA6NKF2 412 aa30.79■■■□□ 2.52
VCP-202ENST00000417448 PCF11O94913 1555 aaKnown RBP30.79■■■□□ 2.52
VCP-202ENST00000417448 FRMPD1Q5SYB0 1578 aa30.77■■■□□ 2.52
VCP-202ENST00000417448 LMTK3Q96Q04 1460 aa30.76■■■□□ 2.52
VCP-202ENST00000417448 RAPGEF3O95398 923 aa30.75■■■□□ 2.51
VCP-202ENST00000417448 PHLDB1Q86UU1 1377 aa30.73■■■□□ 2.51
VCP-202ENST00000417448 PRXQ9BXM0 1461 aa30.71■■■□□ 2.51
VCP-202ENST00000417448 NEO1Q92859 1461 aa30.69■■■□□ 2.5
VCP-202ENST00000417448 RIMS1Q86UR5 1692 aaKnown RBP30.66■■■□□ 2.5
VCP-202ENST00000417448 P3H3Q8IVL6 736 aa30.63■■■□□ 2.49
VCP-202ENST00000417448 ARID4BQ4LE39 1312 aaPredicted RBP30.6■■■□□ 2.49
VCP-202ENST00000417448 ARHGEF40Q8TER5 1519 aa30.6■■■□□ 2.49
VCP-202ENST00000417448 RAPGEF6Q8TEU7 1601 aa30.59■■■□□ 2.49
VCP-202ENST00000417448 SAMD9Q5K651 1589 aa30.58■■■□□ 2.49
VCP-202ENST00000417448 RICTORQ6R327 1708 aa30.57■■■□□ 2.48
VCP-202ENST00000417448 SIGLEC1Q9BZZ2 1709 aa30.53■■■□□ 2.48
VCP-202ENST00000417448 HSPA2P54652 639 aa30.52■■■□□ 2.48
VCP-202ENST00000417448 NUP153P49790 1475 aaKnown RBP30.49■■■□□ 2.47
VCP-202ENST00000417448 FAM9AQ8IZU1 332 aaPredicted RBP30.48■■■□□ 2.47
VCP-202ENST00000417448 DENND4BO75064 1496 aaPredicted RBP30.45■■■□□ 2.47
VCP-202ENST00000417448 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP30.44■■■□□ 2.46
VCP-202ENST00000417448 HNRNPUL2Q1KMD3 747 aaKnown RBP30.44■■■□□ 2.46
VCP-202ENST00000417448 FHOD3Q2V2M9 1422 aa30.43■■■□□ 2.46
VCP-202ENST00000417448 PLPPR3Q6T4P5 718 aa30.41■■■□□ 2.46
VCP-202ENST00000417448 ZMYM4Q5VZL5 1548 aa30.41■■■□□ 2.46
VCP-202ENST00000417448 AKNAQ7Z591 1439 aa30.4■■■□□ 2.46
VCP-202ENST00000417448 FANCAO15360 1455 aa30.39■■■□□ 2.46
VCP-202ENST00000417448 CFAP74Q9C0B2 1584 aa30.38■■■□□ 2.45
VCP-202ENST00000417448 CERKQ8TCT0 537 aa30.38■■■□□ 2.45
VCP-202ENST00000417448 YEATS2Q9ULM3 1422 aa30.38■■■□□ 2.45
VCP-202ENST00000417448 FER1L4A9Z1Z3 1794 aa30.37■■■□□ 2.45
VCP-202ENST00000417448 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP30.37■■■□□ 2.45
VCP-202ENST00000417448 ZFYVE16Q7Z3T8 1539 aa30.35■■■□□ 2.45
VCP-202ENST00000417448 TTC37Q6PGP7 1564 aa30.35■■■□□ 2.45
VCP-202ENST00000417448 POGZQ7Z3K3 1410 aa30.34■■■□□ 2.45
VCP-202ENST00000417448 EFCAB5A4FU69 1503 aa30.32■■■□□ 2.44
VCP-202ENST00000417448 HECW1Q76N89 1606 aa30.29■■■□□ 2.44
VCP-202ENST00000417448 MAGI2Q86UL8 1455 aa30.25■■■□□ 2.43
VCP-202ENST00000417448 PLEKHD1A6NEE1 506 aa30.25■■■□□ 2.43
VCP-202ENST00000417448 MLECQ14165 292 aa30.25■■■□□ 2.43
VCP-202ENST00000417448 PREX1Q8TCU6 1659 aa30.23■■■□□ 2.43
VCP-202ENST00000417448 ILDR2Q71H61 639 aa30.23■■■□□ 2.43
VCP-202ENST00000417448 ARHGEF12Q9NZN5 1544 aa30.21■■■□□ 2.43
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms