RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 RUSC2Q8N2Y8 1516 aa18.51■□□□□ 0.55
LINC00539-201ENST00000411525 FAM9AQ8IZU1 332 aaPredicted RBP18.51■□□□□ 0.55
LINC00539-201ENST00000411525 AEBP2Q6ZN18 517 aaPredicted RBP18.48■□□□□ 0.55
LINC00539-201ENST00000411525 KIF27Q86VH2 1401 aa18.46■□□□□ 0.55
LINC00539-201ENST00000411525 KIF13AQ9H1H9 1805 aa18.44■□□□□ 0.54
LINC00539-201ENST00000411525 CUL7Q14999 1698 aa18.43■□□□□ 0.54
LINC00539-201ENST00000411525 NPM1P06748 294 aaKnown RBP eCLIP18.42■□□□□ 0.54
LINC00539-201ENST00000411525 KIAA0586Q9BVV6 1533 aa18.39■□□□□ 0.54
LINC00539-201ENST00000411525 IGF1RP08069 1367 aa18.39■□□□□ 0.53
LINC00539-201ENST00000411525 KIF21BO75037 1637 aa18.38■□□□□ 0.53
LINC00539-201ENST00000411525 CSRNP3Q8WYN3 585 aa18.38■□□□□ 0.53
LINC00539-201ENST00000411525 MAPKBP1O60336 1514 aa18.35■□□□□ 0.53
LINC00539-201ENST00000411525 ABCC10Q5T3U5 1492 aa18.33■□□□□ 0.53
LINC00539-201ENST00000411525 ADCY10Q96PN6 1610 aa18.32■□□□□ 0.52
LINC00539-201ENST00000411525 LOC105371045A0A1W2PR82 267 aa18.32■□□□□ 0.52
LINC00539-201ENST00000411525 FAM69CQ0P6D2 419 aa18.32■□□□□ 0.52
LINC00539-201ENST00000411525 GOLGA3Q08378 1498 aa18.31■□□□□ 0.52
LINC00539-201ENST00000411525 PRXQ9BXM0 1461 aa18.29■□□□□ 0.52
LINC00539-201ENST00000411525 CARMIL1Q5VZK9 1371 aa18.29■□□□□ 0.52
LINC00539-201ENST00000411525 DIP2BQ9P265 1576 aa18.26■□□□□ 0.51
LINC00539-201ENST00000411525 CARMIL2Q6F5E8 1435 aa18.25■□□□□ 0.51
LINC00539-201ENST00000411525 PTPRGP23470 1445 aa18.24■□□□□ 0.51
LINC00539-201ENST00000411525 RAPGEF2Q9Y4G8 1499 aa18.24■□□□□ 0.51
LINC00539-201ENST00000411525 EHMT2Q96KQ7 1210 aa18.23■□□□□ 0.51
LINC00539-201ENST00000411525 IQGAP2Q13576 1575 aa18.21■□□□□ 0.51
LINC00539-201ENST00000411525 TNIKQ9UKE5 1360 aa18.2■□□□□ 0.5
LINC00539-201ENST00000411525 TSPOAP1O95153 1857 aa18.2■□□□□ 0.5
LINC00539-201ENST00000411525 KDM6BO15054 1643 aa18.16■□□□□ 0.5
LINC00539-201ENST00000411525 ABCC2Q92887 1545 aa18.15■□□□□ 0.5
LINC00539-201ENST00000411525 TTBK1Q5TCY1 1321 aaPredicted RBP18.14■□□□□ 0.49
LINC00539-201ENST00000411525 UBTFP17480 764 aaKnown RBP18.12■□□□□ 0.49
LINC00539-201ENST00000411525 UHRF1BP1LA0JNW5 1464 aa18.12■□□□□ 0.49
LINC00539-201ENST00000411525 PLB1Q6P1J6 1458 aa18.12■□□□□ 0.49
LINC00539-201ENST00000411525 UACAQ9BZF9 1416 aa18.1■□□□□ 0.49
LINC00539-201ENST00000411525 DISP1Q96F81 1524 aa18.08■□□□□ 0.49
LINC00539-201ENST00000411525 ASXL2Q76L83 1435 aa18.08■□□□□ 0.49
LINC00539-201ENST00000411525 GLI2P10070 1586 aa18.08■□□□□ 0.48
LINC00539-201ENST00000411525 UGGT2Q9NYU1 1516 aa18.08■□□□□ 0.48
LINC00539-201ENST00000411525 CEP162Q5TB80 1403 aa18.07■□□□□ 0.48
LINC00539-201ENST00000411525 CTTNBP2Q8WZ74 1663 aa18.05■□□□□ 0.48
LINC00539-201ENST00000411525 KDM5BQ9UGL1 1544 aa18.03■□□□□ 0.48
LINC00539-201ENST00000411525 KIAA0556O60303 1618 aa18.02■□□□□ 0.48
LINC00539-201ENST00000411525 PPRC1Q5VV67 1664 aaKnown RBP18.01■□□□□ 0.47
LINC00539-201ENST00000411525 ZCCHC11Q5TAX3 1644 aaKnown RBP17.99■□□□□ 0.47
LINC00539-201ENST00000411525 EPRSP07814 1512 aaKnown RBP17.98■□□□□ 0.47
LINC00539-201ENST00000411525 CLIP1P30622 1438 aa17.98■□□□□ 0.47
LINC00539-201ENST00000411525 MAP3K4Q9Y6R4 1608 aa17.97■□□□□ 0.47
LINC00539-201ENST00000411525 TEX14Q8IWB6 1497 aa17.96■□□□□ 0.47
LINC00539-201ENST00000411525 KDM4FA0A1W2PPD8 638 aa17.96■□□□□ 0.47
LINC00539-201ENST00000411525 WDR7Q9Y4E6 1490 aa17.9■□□□□ 0.46
LINC00539-201ENST00000411525 EFCAB5A4FU69 1503 aa17.88■□□□□ 0.45
LINC00539-201ENST00000411525 ARHGAP35Q9NRY4 1499 aa17.87■□□□□ 0.45
LINC00539-201ENST00000411525 ABCA8O94911 1581 aa17.87■□□□□ 0.45
LINC00539-201ENST00000411525 CFAP43Q8NDM7 1665 aa17.86■□□□□ 0.45
LINC00539-201ENST00000411525 COL17A1Q9UMD9 1497 aaPredicted RBP17.84■□□□□ 0.45
LINC00539-201ENST00000411525 RANGAP1P46060 587 aaPredicted RBP17.84■□□□□ 0.45
LINC00539-201ENST00000411525 SAMD9Q5K651 1589 aa17.83■□□□□ 0.44
LINC00539-201ENST00000411525 ADGRL1O94910 1474 aa17.82■□□□□ 0.44
LINC00539-201ENST00000411525 MAGI3Q5TCQ9 1506 aa17.82■□□□□ 0.44
LINC00539-201ENST00000411525 CD109Q6YHK3 1445 aa17.81■□□□□ 0.44
LINC00539-201ENST00000411525 VPS8Q8N3P4 1428 aa17.81■□□□□ 0.44
LINC00539-201ENST00000411525 KCNH8Q96L42 1107 aa17.8■□□□□ 0.44
LINC00539-201ENST00000411525 FHOD3Q2V2M9 1422 aa17.72■□□□□ 0.43
LINC00539-201ENST00000411525 ATP10BO94823 1461 aa17.71■□□□□ 0.43
LINC00539-201ENST00000411525 P3H3Q8IVL6 736 aa17.71■□□□□ 0.43
LINC00539-201ENST00000411525 PHLDB1Q86UU1 1377 aa17.69■□□□□ 0.42
LINC00539-201ENST00000411525 ARAP3Q8WWN8 1544 aa17.68■□□□□ 0.42
LINC00539-201ENST00000411525 RAPGEF6Q8TEU7 1601 aa17.68■□□□□ 0.42
LINC00539-201ENST00000411525 PCF11O94913 1555 aaKnown RBP17.67■□□□□ 0.42
LINC00539-201ENST00000411525 ABCA9Q8IUA7 1624 aa17.67■□□□□ 0.42
LINC00539-201ENST00000411525 FMN1Q68DA7 1419 aa17.66■□□□□ 0.42
LINC00539-201ENST00000411525 ARID3CA6NKF2 412 aa17.66■□□□□ 0.42
LINC00539-201ENST00000411525 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.64■□□□□ 0.41
LINC00539-201ENST00000411525 HNRNPUL2Q1KMD3 747 aaKnown RBP17.64■□□□□ 0.41
LINC00539-201ENST00000411525 FYCO1Q9BQS8 1478 aa17.63■□□□□ 0.41
LINC00539-201ENST00000411525 HECW2Q9P2P5 1572 aa17.62■□□□□ 0.41
LINC00539-201ENST00000411525 CASKIN1Q8WXD9 1431 aa17.6■□□□□ 0.41
LINC00539-201ENST00000411525 NEO1Q92859 1461 aa17.6■□□□□ 0.41
LINC00539-201ENST00000411525 NUP153P49790 1475 aaKnown RBP17.57■□□□□ 0.4
LINC00539-201ENST00000411525 PLEKHD1A6NEE1 506 aa17.56■□□□□ 0.4
LINC00539-201ENST00000411525 HECW1Q76N89 1606 aa17.55■□□□□ 0.4
LINC00539-201ENST00000411525 TIAM1Q13009 1591 aa17.55■□□□□ 0.4
LINC00539-201ENST00000411525 APLP2Q06481 763 aa17.55■□□□□ 0.4
LINC00539-201ENST00000411525 MAP3K1Q13233 1512 aa17.55■□□□□ 0.4
LINC00539-201ENST00000411525 RAPGEF3O95398 923 aa17.52■□□□□ 0.4
LINC00539-201ENST00000411525 ILDR1Q86SU0 546 aaPredicted RBP17.52■□□□□ 0.4
LINC00539-201ENST00000411525 LRRIQ1Q96JM4 1722 aa17.51■□□□□ 0.39
LINC00539-201ENST00000411525 CFAP74Q9C0B2 1584 aa17.51■□□□□ 0.39
LINC00539-201ENST00000411525 ADAMTSL3P82987 1691 aa17.5■□□□□ 0.39
LINC00539-201ENST00000411525 PPARGC1BQ86YN6 1023 aaKnown RBP17.48■□□□□ 0.39
LINC00539-201ENST00000411525 CCDC18Q5T9S5 1454 aa17.48■□□□□ 0.39
LINC00539-201ENST00000411525 FRMPD1Q5SYB0 1578 aa17.47■□□□□ 0.39
LINC00539-201ENST00000411525 BCORL1Q5H9F3 1711 aa17.47■□□□□ 0.39
LINC00539-201ENST00000411525 DENND4BO75064 1496 aaPredicted RBP17.46■□□□□ 0.39
LINC00539-201ENST00000411525 ARID4BQ4LE39 1312 aaPredicted RBP17.46■□□□□ 0.38
LINC00539-201ENST00000411525 FANCAO15360 1455 aa17.45■□□□□ 0.38
LINC00539-201ENST00000411525 PTPRMP28827 1452 aa17.45■□□□□ 0.38
LINC00539-201ENST00000411525 RICTORQ6R327 1708 aa17.45■□□□□ 0.38
LINC00539-201ENST00000411525 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.45■□□□□ 0.38
LINC00539-201ENST00000411525 AKNAQ7Z591 1439 aa17.45■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms