RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 EFCAB5A4FU69 1503 aa30.48■■■□□ 2.47
USP39-204ENST00000409766 MAP3K1Q13233 1512 aa30.47■■■□□ 2.47
USP39-204ENST00000409766 HNRNPUL2Q1KMD3 747 aaKnown RBP30.46■■■□□ 2.47
USP39-204ENST00000409766 FHAD1B1AJZ9 1412 aa30.45■■■□□ 2.46
USP39-204ENST00000409766 TIAM1Q13009 1591 aa30.42■■■□□ 2.46
USP39-204ENST00000409766 PBRM1Q86U86 1689 aa30.4■■■□□ 2.46
USP39-204ENST00000409766 THOC2Q8NI27 1593 aaKnown RBP30.39■■■□□ 2.46
USP39-204ENST00000409766 RRBP1Q9P2E9 1410 aaKnown RBP30.37■■■□□ 2.45
USP39-204ENST00000409766 P3H3Q8IVL6 736 aa30.37■■■□□ 2.45
USP39-204ENST00000409766 FHOD3Q2V2M9 1422 aa30.36■■■□□ 2.45
USP39-204ENST00000409766 PCF11O94913 1555 aaKnown RBP30.36■■■□□ 2.45
USP39-204ENST00000409766 AQRO60306 1485 aaKnown RBP eCLIP30.33■■■□□ 2.452e-6■■■■□ 20.3
USP39-204ENST00000409766 CFAP43Q8NDM7 1665 aa30.3■■■□□ 2.44
USP39-204ENST00000409766 IFT140Q96RY7 1462 aa30.3■■■□□ 2.44
USP39-204ENST00000409766 SAMD9Q5K651 1589 aa30.29■■■□□ 2.44
USP39-204ENST00000409766 LRRC9Q6ZRR7 1453 aa30.28■■■□□ 2.44
USP39-204ENST00000409766 FYCO1Q9BQS8 1478 aa30.28■■■□□ 2.44
USP39-204ENST00000409766 CASKIN1Q8WXD9 1431 aa30.26■■■□□ 2.43
USP39-204ENST00000409766 ADAMTS12P58397 1594 aa30.26■■■□□ 2.43
USP39-204ENST00000409766 GRIN2BQ13224 1484 aa30.25■■■□□ 2.43
USP39-204ENST00000409766 FMN1Q68DA7 1419 aa30.22■■■□□ 2.43
USP39-204ENST00000409766 CCNB3Q8WWL7 1395 aa30.22■■■□□ 2.43
USP39-204ENST00000409766 ZNF608Q9ULD9 1512 aaPredicted RBP30.21■■■□□ 2.43
USP39-204ENST00000409766 SNAPC4Q5SXM2 1469 aa30.16■■■□□ 2.42
USP39-204ENST00000409766 ATP1B4Q9UN42 357 aaPredicted RBP30.12■■■□□ 2.41
USP39-204ENST00000409766 IQGAP2Q13576 1575 aa30.09■■■□□ 2.41
USP39-204ENST00000409766 PHLDB1Q86UU1 1377 aa30.08■■■□□ 2.41
USP39-204ENST00000409766 EIF4G3O43432 1585 aaKnown RBP30.08■■■□□ 2.41
USP39-204ENST00000409766 LRRIQ1Q96JM4 1722 aa30.02■■■□□ 2.4
USP39-204ENST00000409766 DHX57Q6P158 1386 aaKnown RBP29.95■■■□□ 2.39
USP39-204ENST00000409766 UGGT2Q9NYU1 1516 aa29.94■■■□□ 2.38
USP39-204ENST00000409766 CLSPNQ9HAW4 1339 aa29.92■■■□□ 2.38
USP39-204ENST00000409766 GRIN2AQ12879 1464 aa29.92■■■□□ 2.38
USP39-204ENST00000409766 ITGAEP38570 1179 aa29.91■■■□□ 2.38
USP39-204ENST00000409766 KIAA0586Q9BVV6 1533 aa29.91■■■□□ 2.38
USP39-204ENST00000409766 MAGI1Q96QZ7 1491 aaPredicted RBP29.9■■■□□ 2.38
USP39-204ENST00000409766 MTUS2Q5JR59 1369 aa29.88■■■□□ 2.37
USP39-204ENST00000409766 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.85■■■□□ 2.371e-6■□□□□ 11
USP39-204ENST00000409766 CCDC18Q5T9S5 1454 aa29.83■■■□□ 2.37
USP39-204ENST00000409766 FAM50AQ14320 339 aaKnown RBP29.83■■■□□ 2.37
USP39-204ENST00000409766 HECW1Q76N89 1606 aa29.82■■■□□ 2.36
USP39-204ENST00000409766 SYNJ2O15056 1496 aa29.8■■■□□ 2.36
USP39-204ENST00000409766 EHBP1L1Q8N3D4 1523 aa29.8■■■□□ 2.36
USP39-204ENST00000409766 FGD6Q6ZV73 1430 aa29.79■■■□□ 2.36
USP39-204ENST00000409766 RAB3GAP2Q9H2M9 1393 aa29.78■■■□□ 2.36
USP39-204ENST00000409766 DISP1Q96F81 1524 aa29.78■■■□□ 2.36
USP39-204ENST00000409766 SUPT6HQ7KZ85 1726 aaKnown RBP29.77■■■□□ 2.36
USP39-204ENST00000409766 KIAA0556O60303 1618 aa29.77■■■□□ 2.36
USP39-204ENST00000409766 NCOA2Q15596 1464 aa29.76■■■□□ 2.35
USP39-204ENST00000409766 SETD5Q9C0A6 1442 aa29.76■■■□□ 2.35
USP39-204ENST00000409766 MAGI3Q5TCQ9 1506 aa29.75■■■□□ 2.35
USP39-204ENST00000409766 EPRSP07814 1512 aaKnown RBP29.74■■■□□ 2.35
USP39-204ENST00000409766 CHMP7Q8WUX9 453 aaPredicted RBP29.73■■■□□ 2.35
USP39-204ENST00000409766 CEP170Q5SW79 1584 aa29.73■■■□□ 2.35
USP39-204ENST00000409766 ARHGEF11O15085 1522 aa29.71■■■□□ 2.35
USP39-204ENST00000409766 MYOM3Q5VTT5 1437 aa29.69■■■□□ 2.34
USP39-204ENST00000409766 ZNF316A6NFI3 1004 aaPredicted RBP29.68■■■□□ 2.34
USP39-204ENST00000409766 NUP160Q12769 1436 aa29.65■■■□□ 2.34
USP39-204ENST00000409766 CDK13Q14004 1512 aaKnown RBP29.64■■■□□ 2.34
USP39-204ENST00000409766 DIEXFQ68CQ4 756 aaKnown RBP29.62■■■□□ 2.33
USP39-204ENST00000409766 FBLN2P98095 1184 aa29.61■■■□□ 2.33
USP39-204ENST00000409766 MAPKBP1O60336 1514 aa29.58■■■□□ 2.33
USP39-204ENST00000409766 RAPGEF6Q8TEU7 1601 aa29.58■■■□□ 2.33
USP39-204ENST00000409766 PTPN23Q9H3S7 1636 aa29.57■■■□□ 2.32
USP39-204ENST00000409766 NUP153P49790 1475 aaKnown RBP29.55■■■□□ 2.32
USP39-204ENST00000409766 PTPRKQ15262 1439 aa29.54■■■□□ 2.32
USP39-204ENST00000409766 TCOF1Q13428 1488 aaKnown RBP29.5■■■□□ 2.31
USP39-204ENST00000409766 JPH4Q96JJ6 628 aa29.5■■■□□ 2.31
USP39-204ENST00000409766 ARID3CA6NKF2 412 aa29.49■■■□□ 2.31
USP39-204ENST00000409766 CARMIL2Q6F5E8 1435 aa29.48■■■□□ 2.31
USP39-204ENST00000409766 HFM1A2PYH4 1435 aa29.47■■■□□ 2.31
USP39-204ENST00000409766 MIA2Q96PC5 1412 aa29.45■■■□□ 2.3
USP39-204ENST00000409766 PLB1Q6P1J6 1458 aa29.41■■■□□ 2.3
USP39-204ENST00000409766 NAIPQ13075 1403 aa29.38■■■□□ 2.29
USP39-204ENST00000409766 CHD1O14646 1710 aa29.38■■■□□ 2.29
USP39-204ENST00000409766 CDK11AQ9UQ88 783 aaPredicted RBP29.37■■■□□ 2.29
USP39-204ENST00000409766 TROQ12816 1431 aaPredicted RBP29.3■■■□□ 2.28
USP39-204ENST00000409766 UACAQ9BZF9 1416 aa29.3■■■□□ 2.28
USP39-204ENST00000409766 ABCA8O94911 1581 aa29.29■■■□□ 2.28
USP39-204ENST00000409766 AKNAQ7Z591 1439 aa29.28■■■□□ 2.28
USP39-204ENST00000409766 GCC2Q8IWJ2 1684 aa29.27■■■□□ 2.28
USP39-204ENST00000409766 PRG4Q92954 1404 aaPredicted RBP29.27■■■□□ 2.28
USP39-204ENST00000409766 SIN3AQ96ST3 1273 aa29.25■■■□□ 2.27
USP39-204ENST00000409766 ADCY10Q96PN6 1610 aa29.25■■■□□ 2.27
USP39-204ENST00000409766 TIMELESSQ9UNS1 1208 aa29.21■■■□□ 2.27
USP39-204ENST00000409766 CHIC2Q9UKJ5 165 aa29.2■■■□□ 2.27
USP39-204ENST00000409766 RRP7BPQ9NSQ0 103 aa29.19■■■□□ 2.26
USP39-204ENST00000409766 DNMT1P26358 1616 aaKnown RBP29.19■■■□□ 2.26
USP39-204ENST00000409766 KIF14Q15058 1648 aa29.18■■■□□ 2.26
USP39-204ENST00000409766 NEUROD1Q13562 356 aa29.18■■■□□ 2.26
USP39-204ENST00000409766 ITSN2Q9NZM3 1697 aa29.17■■■□□ 2.26
USP39-204ENST00000409766 DAPK1P53355 1430 aa29.17■■■□□ 2.26
USP39-204ENST00000409766 ATP10BO94823 1461 aa29.16■■■□□ 2.26
USP39-204ENST00000409766 SHROOM2Q13796 1616 aa29.15■■■□□ 2.26
USP39-204ENST00000409766 ZNF644Q9H582 1327 aaPredicted RBP29.14■■■□□ 2.25
USP39-204ENST00000409766 GPATCH8Q9UKJ3 1502 aaKnown RBP29.13■■■□□ 2.25
USP39-204ENST00000409766 ABCC5O15440 1437 aa29.13■■■□□ 2.25
USP39-204ENST00000409766 PTPRGP23470 1445 aa29.13■■■□□ 2.25
USP39-204ENST00000409766 KDM6BO15054 1643 aa29.12■■■□□ 2.25
USP39-204ENST00000409766 ROCK1Q13464 1354 aa29.12■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms