RNA–Protein interactions for RNA: ENST00000406134.5

MSH2-202, Transcript of mutS homolog 2, humanhuman

TSL 1 (best) BASIC

Gene MSH2, Length 3,628 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH2-202ENST00000406134 RAD54L2Q9Y4B4 1467 aa14.73□□□□□ -0.05
MSH2-202ENST00000406134 APLP2Q06481 763 aa14.73□□□□□ -0.05
MSH2-202ENST00000406134 CUL7Q14999 1698 aa14.73□□□□□ -0.05
MSH2-202ENST00000406134 LRRC9Q6ZRR7 1453 aa14.72□□□□□ -0.05
MSH2-202ENST00000406134 CCNB3Q8WWL7 1395 aa14.71□□□□□ -0.05
MSH2-202ENST00000406134 CLSPNQ9HAW4 1339 aa14.71□□□□□ -0.06
MSH2-202ENST00000406134 ABCA5Q8WWZ7 1642 aa14.7□□□□□ -0.06
MSH2-202ENST00000406134 MIER1Q8N108 512 aa14.69□□□□□ -0.06
MSH2-202ENST00000406134 URB2Q14146 1524 aaKnown RBP14.67□□□□□ -0.06
MSH2-202ENST00000406134 PHLDB1Q86UU1 1377 aa14.66□□□□□ -0.06
MSH2-202ENST00000406134 SAMD9Q5K651 1589 aa14.65□□□□□ -0.06
MSH2-202ENST00000406134 KIF21AQ7Z4S6 1674 aa14.64□□□□□ -0.07
MSH2-202ENST00000406134 EFCAB5A4FU69 1503 aa14.64□□□□□ -0.07
MSH2-202ENST00000406134 LAMC3Q9Y6N6 1575 aa14.64□□□□□ -0.07
MSH2-202ENST00000406134 GTF3C3Q9Y5Q9 886 aa14.64□□□□□ -0.07
MSH2-202ENST00000406134 SNAPC4Q5SXM2 1469 aa14.63□□□□□ -0.07
MSH2-202ENST00000406134 FYCO1Q9BQS8 1478 aa14.61□□□□□ -0.07
MSH2-202ENST00000406134 AQRO60306 1485 aaKnown RBP eCLIP14.61□□□□□ -0.076e-6■■■■□ 25.1
MSH2-202ENST00000406134 RAB3GAP2Q9H2M9 1393 aa14.6□□□□□ -0.07
MSH2-202ENST00000406134 FHOD3Q2V2M9 1422 aa14.6□□□□□ -0.07
MSH2-202ENST00000406134 TARBP1Q13395 1621 aaKnown RBP14.58□□□□□ -0.08
MSH2-202ENST00000406134 FHAD1B1AJZ9 1412 aa14.58□□□□□ -0.08
MSH2-202ENST00000406134 CASKIN1Q8WXD9 1431 aa14.57□□□□□ -0.08
MSH2-202ENST00000406134 CENPBP07199 599 aaPredicted RBP14.56□□□□□ -0.08
MSH2-202ENST00000406134 PBRM1Q86U86 1689 aa14.54□□□□□ -0.08
MSH2-202ENST00000406134 SETD5Q9C0A6 1442 aa14.52□□□□□ -0.09
MSH2-202ENST00000406134 DNAJC5BQ9UF47 199 aa14.51□□□□□ -0.09
MSH2-202ENST00000406134 GRIN2BQ13224 1484 aa14.5□□□□□ -0.09
MSH2-202ENST00000406134 MAGI3Q5TCQ9 1506 aa14.49□□□□□ -0.09
MSH2-202ENST00000406134 YTHDC1Q96MU7 727 aaKnown RBP14.49□□□□□ -0.09
MSH2-202ENST00000406134 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP14.48□□□□□ -0.09
MSH2-202ENST00000406134 ARHGEF11O15085 1522 aa14.48□□□□□ -0.09
MSH2-202ENST00000406134 THOC2Q8NI27 1593 aaKnown RBP14.48□□□□□ -0.09
MSH2-202ENST00000406134 P3H3Q8IVL6 736 aa14.47□□□□□ -0.09
MSH2-202ENST00000406134 PTPRKQ15262 1439 aa14.47□□□□□ -0.09
MSH2-202ENST00000406134 MYT1Q01538 1121 aa14.47□□□□□ -0.09
MSH2-202ENST00000406134 GAPVD1Q14C86 1478 aa14.46□□□□□ -0.09
MSH2-202ENST00000406134 ITGAEP38570 1179 aa14.46□□□□□ -0.1
MSH2-202ENST00000406134 PTPN23Q9H3S7 1636 aa14.44□□□□□ -0.1
MSH2-202ENST00000406134 FGD6Q6ZV73 1430 aa14.44□□□□□ -0.1
MSH2-202ENST00000406134 KDM5BQ9UGL1 1544 aa14.43□□□□□ -0.1
MSH2-202ENST00000406134 TDRD9Q8NDG6 1382 aaKnown RBP14.43□□□□□ -0.1
MSH2-202ENST00000406134 SUPT6HQ7KZ85 1726 aaKnown RBP14.43□□□□□ -0.1
MSH2-202ENST00000406134 FMN1Q68DA7 1419 aa14.42□□□□□ -0.1
MSH2-202ENST00000406134 ADAMTS12P58397 1594 aa14.41□□□□□ -0.1
MSH2-202ENST00000406134 UGGT2Q9NYU1 1516 aa14.41□□□□□ -0.1
MSH2-202ENST00000406134 GCC2Q8IWJ2 1684 aa14.4□□□□□ -0.1
MSH2-202ENST00000406134 EHBP1L1Q8N3D4 1523 aa14.38□□□□□ -0.11
MSH2-202ENST00000406134 NCOA2Q15596 1464 aa14.38□□□□□ -0.11
MSH2-202ENST00000406134 DENND4BO75064 1496 aaPredicted RBP14.37□□□□□ -0.11
MSH2-202ENST00000406134 SIN3AQ96ST3 1273 aa14.37□□□□□ -0.11
MSH2-202ENST00000406134 KDM6BO15054 1643 aa14.37□□□□□ -0.11
MSH2-202ENST00000406134 HFM1A2PYH4 1435 aa14.36□□□□□ -0.11
MSH2-202ENST00000406134 PDS5BQ9NTI5 1447 aa14.36□□□□□ -0.11
MSH2-202ENST00000406134 CCDC18Q5T9S5 1454 aa14.35□□□□□ -0.11
MSH2-202ENST00000406134 FAM50AQ14320 339 aaKnown RBP14.34□□□□□ -0.11
MSH2-202ENST00000406134 IQGAP2Q13576 1575 aa14.34□□□□□ -0.11
MSH2-202ENST00000406134 MYOM3Q5VTT5 1437 aa14.33□□□□□ -0.11
MSH2-202ENST00000406134 NAIPQ13075 1403 aa14.33□□□□□ -0.12
MSH2-202ENST00000406134 WDR62O43379 1518 aa14.33□□□□□ -0.12
MSH2-202ENST00000406134 TCOF1Q13428 1488 aaKnown RBP14.33□□□□□ -0.12
MSH2-202ENST00000406134 HECW1Q76N89 1606 aa14.32□□□□□ -0.12
MSH2-202ENST00000406134 KCNH8Q96L42 1107 aa14.32□□□□□ -0.12
MSH2-202ENST00000406134 UACAQ9BZF9 1416 aa14.29□□□□□ -0.12
MSH2-202ENST00000406134 CDK13Q14004 1512 aaKnown RBP14.28□□□□□ -0.12
MSH2-202ENST00000406134 EPRSP07814 1512 aaKnown RBP14.27□□□□□ -0.12
MSH2-202ENST00000406134 PPP1R15AO75807 674 aaPredicted RBP14.27□□□□□ -0.13
MSH2-202ENST00000406134 MTUS2Q5JR59 1369 aa14.26□□□□□ -0.13
MSH2-202ENST00000406134 ATP1B4Q9UN42 357 aaPredicted RBP14.26□□□□□ -0.13
MSH2-202ENST00000406134 MRC2Q9UBG0 1479 aa14.25□□□□□ -0.13
MSH2-202ENST00000406134 KIAA0556O60303 1618 aa14.25□□□□□ -0.13
MSH2-202ENST00000406134 ZNF608Q9ULD9 1512 aaPredicted RBP14.24□□□□□ -0.13
MSH2-202ENST00000406134 DISP1Q96F81 1524 aa14.23□□□□□ -0.13
MSH2-202ENST00000406134 TIMELESSQ9UNS1 1208 aa14.22□□□□□ -0.13
MSH2-202ENST00000406134 EIF4G3O43432 1585 aaKnown RBP14.22□□□□□ -0.13
MSH2-202ENST00000406134 AKNAQ7Z591 1439 aa14.2□□□□□ -0.14
MSH2-202ENST00000406134 SUPT16HQ9Y5B9 1047 aaKnown RBP14.19□□□□□ -0.14
MSH2-202ENST00000406134 DNMT1P26358 1616 aaKnown RBP14.18□□□□□ -0.14
MSH2-202ENST00000406134 RAPGEF6Q8TEU7 1601 aa14.17□□□□□ -0.14
MSH2-202ENST00000406134 NUP153P49790 1475 aaKnown RBP14.16□□□□□ -0.14
MSH2-202ENST00000406134 HIRIP3Q9BW71 556 aaPredicted RBP14.15□□□□□ -0.14
MSH2-202ENST00000406134 CROCC2H7BZ55 1655 aa14.15□□□□□ -0.14
MSH2-202ENST00000406134 POLR1AO95602 1720 aaPredicted RBP14.15□□□□□ -0.14
MSH2-202ENST00000406134 IFT140Q96RY7 1462 aa14.15□□□□□ -0.14
MSH2-202ENST00000406134 CEP170Q5SW79 1584 aa14.15□□□□□ -0.15
MSH2-202ENST00000406134 DDX10Q13206 875 aaKnown RBP14.14□□□□□ -0.15
MSH2-202ENST00000406134 MIA2Q96PC5 1412 aa14.14□□□□□ -0.15
MSH2-202ENST00000406134 ADCY10Q96PN6 1610 aa14.14□□□□□ -0.15
MSH2-202ENST00000406134 GRIN2AQ12879 1464 aa14.12□□□□□ -0.15
MSH2-202ENST00000406134 KIAA0586Q9BVV6 1533 aa14.12□□□□□ -0.15
MSH2-202ENST00000406134 ADGBQ8N7X0 1667 aa14.11□□□□□ -0.15
MSH2-202ENST00000406134 KIF14Q15058 1648 aa14.1□□□□□ -0.15
MSH2-202ENST00000406134 DAPK1P53355 1430 aa14.09□□□□□ -0.15
MSH2-202ENST00000406134 TONSLQ96HA7 1378 aa14.08□□□□□ -0.16
MSH2-202ENST00000406134 TEX14Q8IWB6 1497 aa14.08□□□□□ -0.16
MSH2-202ENST00000406134 ABCC5O15440 1437 aa14.07□□□□□ -0.16
MSH2-202ENST00000406134 ITSN2Q9NZM3 1697 aa14.06□□□□□ -0.16
MSH2-202ENST00000406134 CDC42BPAQ5VT25 1732 aa14.06□□□□□ -0.16
MSH2-202ENST00000406134 RRP7BPQ9NSQ0 103 aa14.05□□□□□ -0.16
MSH2-202ENST00000406134 ROCK1Q13464 1354 aa14.04□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms