RNA–Protein interactions for RNA: ENST00000402105.7

HPS4-203, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best) BASIC

Gene HPS4, Length 3,562 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-203ENST00000402105 TONSLQ96HA7 1378 aa12.83□□□□□ -0.36
HPS4-203ENST00000402105 SETD5Q9C0A6 1442 aa12.83□□□□□ -0.36
HPS4-203ENST00000402105 CHIC2Q9UKJ5 165 aa12.82□□□□□ -0.36
HPS4-203ENST00000402105 UNC13AQ9UPW8 1703 aa12.82□□□□□ -0.36
HPS4-203ENST00000402105 RRBP1Q9P2E9 1410 aaKnown RBP12.82□□□□□ -0.36
HPS4-203ENST00000402105 PPP1R15AO75807 674 aaPredicted RBP12.81□□□□□ -0.36
HPS4-203ENST00000402105 FAM9BQ8IZU0 186 aa12.81□□□□□ -0.36
HPS4-203ENST00000402105 CDK11AQ9UQ88 783 aaPredicted RBP12.81□□□□□ -0.36
HPS4-203ENST00000402105 PRXQ9BXM0 1461 aa12.8□□□□□ -0.36
HPS4-203ENST00000402105 PHLDB1Q86UU1 1377 aa12.79□□□□□ -0.36
HPS4-203ENST00000402105 ARHGAP35Q9NRY4 1499 aa12.79□□□□□ -0.36
HPS4-203ENST00000402105 WDR97A6NE52 1622 aa12.79□□□□□ -0.36
HPS4-203ENST00000402105 CUX2O14529 1486 aa12.77□□□□□ -0.36
HPS4-203ENST00000402105 BICRAQ9NZM4 1560 aa12.77□□□□□ -0.37
HPS4-203ENST00000402105 RRP7BPQ9NSQ0 103 aa12.76□□□□□ -0.37
HPS4-203ENST00000402105 CARMIL1Q5VZK9 1371 aa12.74□□□□□ -0.37
HPS4-203ENST00000402105 TOP2BQ02880 1626 aa12.74□□□□□ -0.37
HPS4-203ENST00000402105 MSH5O43196 834 aa12.72□□□□□ -0.37
HPS4-203ENST00000402105 B4GALNT3Q6L9W6 998 aa12.72□□□□□ -0.37
HPS4-203ENST00000402105 CCER2I3L3R5 266 aa12.72□□□□□ -0.37
HPS4-203ENST00000402105 MAPKBP1O60336 1514 aa12.71□□□□□ -0.37
HPS4-203ENST00000402105 FOXD1Q16676 465 aa12.71□□□□□ -0.37
HPS4-203ENST00000402105 IGF1RP08069 1367 aa12.71□□□□□ -0.38
HPS4-203ENST00000402105 CUX1P39880 1505 aa12.7□□□□□ -0.38
HPS4-203ENST00000402105 FHOD3Q2V2M9 1422 aa12.69□□□□□ -0.38
HPS4-203ENST00000402105 NBR1Q14596 966 aa12.69□□□□□ -0.38
HPS4-203ENST00000402105 ZNF326Q5BKZ1 582 aaKnown RBP12.69□□□□□ -0.38
HPS4-203ENST00000402105 ERICH3Q5RHP9 1530 aa12.68□□□□□ -0.38
HPS4-203ENST00000402105 CCDC184Q52MB2 194 aa12.68□□□□□ -0.38
HPS4-203ENST00000402105 MRS2Q9HD23 443 aa12.67□□□□□ -0.38
HPS4-203ENST00000402105 MTUS2Q5JR59 1369 aa12.67□□□□□ -0.38
HPS4-203ENST00000402105 HSPA5P11021 654 aaKnown RBP12.67□□□□□ -0.38
HPS4-203ENST00000402105 LRRC9Q6ZRR7 1453 aa12.66□□□□□ -0.38
HPS4-203ENST00000402105 PEG3Q9GZU2 1588 aa12.63□□□□□ -0.39
HPS4-203ENST00000402105 TIMELESSQ9UNS1 1208 aa12.62□□□□□ -0.39
HPS4-203ENST00000402105 EIF4G2P78344 907 aaKnown RBP eCLIP12.61□□□□□ -0.39
HPS4-203ENST00000402105 SALL2Q9Y467 1007 aaPredicted RBP12.6□□□□□ -0.39
HPS4-203ENST00000402105 DNAJC5BQ9UF47 199 aa12.59□□□□□ -0.39
HPS4-203ENST00000402105 FHAD1B1AJZ9 1412 aa12.59□□□□□ -0.39
HPS4-203ENST00000402105 TIAM1Q13009 1591 aa12.59□□□□□ -0.39
HPS4-203ENST00000402105 WASHC2AQ641Q2 1341 aa12.59□□□□□ -0.39
HPS4-203ENST00000402105 PPP4R2Q9NY27 417 aa12.58□□□□□ -0.4
HPS4-203ENST00000402105 NPM2Q86SE8 214 aaKnown RBP12.56□□□□□ -0.4
HPS4-203ENST00000402105 L3MBTL2Q969R5 705 aa12.55□□□□□ -0.4
HPS4-203ENST00000402105 BIVM-ERCC5R4GMW8 1640 aa12.55□□□□□ -0.4
HPS4-203ENST00000402105 CCDC18Q5T9S5 1454 aa12.54□□□□□ -0.4
HPS4-203ENST00000402105 C11orf95C9JLR9 678 aaPredicted RBP12.54□□□□□ -0.4
HPS4-203ENST00000402105 FGD5Q6ZNL6 1462 aa12.54□□□□□ -0.4
HPS4-203ENST00000402105 RAD54L2Q9Y4B4 1467 aa12.53□□□□□ -0.4
HPS4-203ENST00000402105 CCDC136Q96JN2 1154 aa12.52□□□□□ -0.4
HPS4-203ENST00000402105 DEKP35659 375 aaKnown RBP12.52□□□□□ -0.41
HPS4-203ENST00000402105 CFTRP13569 1480 aa12.51□□□□□ -0.41
HPS4-203ENST00000402105 MPHOSPH9Q99550 1183 aa12.5□□□□□ -0.41
HPS4-203ENST00000402105 PTPRKQ15262 1439 aa12.5□□□□□ -0.41
HPS4-203ENST00000402105 TDRD9Q8NDG6 1382 aaKnown RBP12.5□□□□□ -0.41
HPS4-203ENST00000402105 PRKRIP1Q9H875 184 aaPredicted RBP12.5□□□□□ -0.41
HPS4-203ENST00000402105 FGD6Q6ZV73 1430 aa12.5□□□□□ -0.41
HPS4-203ENST00000402105 ZNF777Q9ULD5 760 aaPredicted RBP12.5□□□□□ -0.41
HPS4-203ENST00000402105 FANCIQ9NVI1 1328 aa12.49□□□□□ -0.41
HPS4-203ENST00000402105 NCAPD3P42695 1498 aa12.49□□□□□ -0.41
HPS4-203ENST00000402105 PCF11O94913 1555 aaKnown RBP12.49□□□□□ -0.41
HPS4-203ENST00000402105 SLC4A1APQ9BWU0 796 aaKnown RBP12.49□□□□□ -0.41
HPS4-203ENST00000402105 CADPSQ9ULU8 1353 aa12.48□□□□□ -0.41
HPS4-203ENST00000402105 AQRO60306 1485 aaKnown RBP eCLIP12.48□□□□□ -0.413e-8■■■■□ 23.3
HPS4-203ENST00000402105 PAK3O75914 559 aaPredicted RBP12.48□□□□□ -0.41
HPS4-203ENST00000402105 NOP58Q9Y2X3 529 aaKnown RBP12.46□□□□□ -0.41
HPS4-203ENST00000402105 UACAQ9BZF9 1416 aa12.45□□□□□ -0.42
HPS4-203ENST00000402105 RTL5Q5HYW3 569 aaPredicted RBP12.45□□□□□ -0.42
HPS4-203ENST00000402105 KDM2AQ9Y2K7 1162 aa12.45□□□□□ -0.42
HPS4-203ENST00000402105 ANP32AP39687 249 aaKnown RBP12.45□□□□□ -0.42
HPS4-203ENST00000402105 NBPF8Q3BBV2 869 aa12.44□□□□□ -0.42
HPS4-203ENST00000402105 TMC1Q8TDI8 760 aa12.44□□□□□ -0.42
HPS4-203ENST00000402105 FMN1Q68DA7 1419 aa12.43□□□□□ -0.42
HPS4-203ENST00000402105 NAIPQ13075 1403 aa12.42□□□□□ -0.42
HPS4-203ENST00000402105 ZBTB47Q9UFB7 747 aaPredicted RBP12.42□□□□□ -0.42
HPS4-203ENST00000402105 RTN4Q9NQC3 1192 aaKnown RBP12.41□□□□□ -0.42
HPS4-203ENST00000402105 CASKIN1Q8WXD9 1431 aa12.41□□□□□ -0.42
HPS4-203ENST00000402105 AKNAQ7Z591 1439 aa12.4□□□□□ -0.42
HPS4-203ENST00000402105 ZNF644Q9H582 1327 aaPredicted RBP12.4□□□□□ -0.42
HPS4-203ENST00000402105 KIF7Q2M1P5 1343 aa12.4□□□□□ -0.42
HPS4-203ENST00000402105 HFM1A2PYH4 1435 aa12.4□□□□□ -0.42
HPS4-203ENST00000402105 LAS1LQ9Y4W2 734 aaKnown RBP12.39□□□□□ -0.43
HPS4-203ENST00000402105 NCOA2Q15596 1464 aa12.39□□□□□ -0.43
HPS4-203ENST00000402105 CCDC7Q96M83 1385 aa12.39□□□□□ -0.43
HPS4-203ENST00000402105 ZBED9Q6R2W3 1325 aa12.38□□□□□ -0.43
HPS4-203ENST00000402105 FANCD2Q9BXW9 1451 aa12.38□□□□□ -0.43
HPS4-203ENST00000402105 MAP3K1Q13233 1512 aa12.38□□□□□ -0.43
HPS4-203ENST00000402105 CNTLNQ9NXG0 1405 aa12.37□□□□□ -0.43
HPS4-203ENST00000402105 FYCO1Q9BQS8 1478 aa12.37□□□□□ -0.43
HPS4-203ENST00000402105 MYOM3Q5VTT5 1437 aa12.37□□□□□ -0.43
HPS4-203ENST00000402105 HMGXB3Q12766 1538 aa12.34□□□□□ -0.43
HPS4-203ENST00000402105 NESP48681 1621 aa12.34□□□□□ -0.43
HPS4-203ENST00000402105 ERICH6BQ5W0A0 696 aa12.34□□□□□ -0.43
HPS4-203ENST00000402105 NUDCQ9Y266 331 aa12.33□□□□□ -0.44
HPS4-203ENST00000402105 FBLN2P98095 1184 aa12.33□□□□□ -0.44
HPS4-203ENST00000402105 PTPN23Q9H3S7 1636 aa12.32□□□□□ -0.44
HPS4-203ENST00000402105 SKAP1Q86WV1 359 aa12.31□□□□□ -0.44
HPS4-203ENST00000402105 CARD11Q9BXL7 1154 aa12.31□□□□□ -0.44
HPS4-203ENST00000402105 IPO9Q96P70 1041 aaKnown RBP12.31□□□□□ -0.44
HPS4-203ENST00000402105 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 57.1 ms