RNA–Protein interactions for RNA: ENST00000401607.6

CPNE1-205, Transcript of copine 1, humanhuman

TSL 5

Gene CPNE1, Length 1,795 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-205ENST00000401607 TRIM26Q12899 539 aaPredicted RBP40.19■■■■■ 4.02
CPNE1-205ENST00000401607 PPARGC1BQ86YN6 1023 aaKnown RBP40.12■■■■■ 4.01
CPNE1-205ENST00000401607 SNAPC4Q5SXM2 1469 aa40.08■■■■■ 4.01
CPNE1-205ENST00000401607 MAGI1Q96QZ7 1491 aaPredicted RBP39.97■■■■□ 3.99
CPNE1-205ENST00000401607 EFCAB5A4FU69 1503 aa39.95■■■■□ 3.99
CPNE1-205ENST00000401607 GRIN2AQ12879 1464 aa39.86■■■■□ 3.97
CPNE1-205ENST00000401607 SAMD9Q5K651 1589 aa39.83■■■■□ 3.97
CPNE1-205ENST00000401607 SYNJ2O15056 1496 aa39.83■■■■□ 3.97
CPNE1-205ENST00000401607 IQGAP2Q13576 1575 aa39.79■■■■□ 3.96
CPNE1-205ENST00000401607 FHOD3Q2V2M9 1422 aa39.79■■■■□ 3.96
CPNE1-205ENST00000401607 TTBK1Q5TCY1 1321 aaPredicted RBP39.78■■■■□ 3.96
CPNE1-205ENST00000401607 APLP2Q06481 763 aa39.77■■■■□ 3.96
CPNE1-205ENST00000401607 P3H3Q8IVL6 736 aa39.77■■■■□ 3.96
CPNE1-205ENST00000401607 CHMP7Q8WUX9 453 aaPredicted RBP39.68■■■■□ 3.94
CPNE1-205ENST00000401607 KIAA0586Q9BVV6 1533 aa39.68■■■■□ 3.94
CPNE1-205ENST00000401607 PCF11O94913 1555 aaKnown RBP39.65■■■■□ 3.94
CPNE1-205ENST00000401607 CEP170Q5SW79 1584 aa39.63■■■■□ 3.94
CPNE1-205ENST00000401607 UGGT2Q9NYU1 1516 aa39.61■■■■□ 3.93
CPNE1-205ENST00000401607 NUP160Q12769 1436 aa39.57■■■■□ 3.93
CPNE1-205ENST00000401607 FMN1Q68DA7 1419 aa39.57■■■■□ 3.93
CPNE1-205ENST00000401607 FBLN2P98095 1184 aa39.56■■■■□ 3.92
CPNE1-205ENST00000401607 MAP3K1Q13233 1512 aa39.55■■■■□ 3.92
CPNE1-205ENST00000401607 FYCO1Q9BQS8 1478 aa39.53■■■■□ 3.92
CPNE1-205ENST00000401607 CASKIN1Q8WXD9 1431 aa39.53■■■■□ 3.92
CPNE1-205ENST00000401607 KANK4Q5T7N3 995 aaPredicted RBP39.52■■■■□ 3.92
CPNE1-205ENST00000401607 TIAM1Q13009 1591 aa39.52■■■■□ 3.92
CPNE1-205ENST00000401607 CFAP43Q8NDM7 1665 aa39.45■■■■□ 3.91
CPNE1-205ENST00000401607 DISP1Q96F81 1524 aa39.43■■■■□ 3.9
CPNE1-205ENST00000401607 KIAA0556O60303 1618 aa39.41■■■■□ 3.9
CPNE1-205ENST00000401607 CHD1O14646 1710 aa39.39■■■■□ 3.9
CPNE1-205ENST00000401607 LRRC9Q6ZRR7 1453 aa39.32■■■■□ 3.89
CPNE1-205ENST00000401607 ATP1B4Q9UN42 357 aaPredicted RBP39.31■■■■□ 3.88
CPNE1-205ENST00000401607 LRRIQ1Q96JM4 1722 aa39.28■■■■□ 3.88
CPNE1-205ENST00000401607 JPH4Q96JJ6 628 aa39.23■■■■□ 3.87
CPNE1-205ENST00000401607 HECW1Q76N89 1606 aa39.18■■■■□ 3.86
CPNE1-205ENST00000401607 HRCP23327 699 aa39.16■■■■□ 3.86
CPNE1-205ENST00000401607 CARMIL2Q6F5E8 1435 aa39.13■■■■□ 3.86
CPNE1-205ENST00000401607 RRBP1Q9P2E9 1410 aaKnown RBP39.11■■■■□ 3.85
CPNE1-205ENST00000401607 CCDC18Q5T9S5 1454 aa39.09■■■■□ 3.85
CPNE1-205ENST00000401607 EPRSP07814 1512 aaKnown RBP39.04■■■■□ 3.84
CPNE1-205ENST00000401607 RAPGEF6Q8TEU7 1601 aa39.03■■■■□ 3.84
CPNE1-205ENST00000401607 SHROOM2Q13796 1616 aa39.02■■■■□ 3.84
CPNE1-205ENST00000401607 PHLDB1Q86UU1 1377 aa38.99■■■■□ 3.83
CPNE1-205ENST00000401607 PRG4Q92954 1404 aaPredicted RBP38.99■■■■□ 3.83
CPNE1-205ENST00000401607 MTUS2Q5JR59 1369 aa38.97■■■■□ 3.83
CPNE1-205ENST00000401607 CDK13Q14004 1512 aaKnown RBP38.96■■■■□ 3.83
CPNE1-205ENST00000401607 NUP153P49790 1475 aaKnown RBP38.96■■■■□ 3.83
CPNE1-205ENST00000401607 MAGI3Q5TCQ9 1506 aa38.95■■■■□ 3.83
CPNE1-205ENST00000401607 EHBP1L1Q8N3D4 1523 aa38.95■■■■□ 3.83
CPNE1-205ENST00000401607 CLASP1Q7Z460 1538 aa38.95■■■■□ 3.83
CPNE1-205ENST00000401607 CCNB3Q8WWL7 1395 aa38.95■■■■□ 3.83
CPNE1-205ENST00000401607 PLB1Q6P1J6 1458 aa38.91■■■■□ 3.82
CPNE1-205ENST00000401607 HNRNPUL2Q1KMD3 747 aaKnown RBP38.9■■■■□ 3.82
CPNE1-205ENST00000401607 SUPT6HQ7KZ85 1726 aaKnown RBP38.84■■■■□ 3.81
CPNE1-205ENST00000401607 ABCA8O94911 1581 aa38.83■■■■□ 3.81
CPNE1-205ENST00000401607 NCOA2Q15596 1464 aa38.81■■■■□ 3.8
CPNE1-205ENST00000401607 ARID3CA6NKF2 412 aa38.8■■■■□ 3.8
CPNE1-205ENST00000401607 ARHGEF11O15085 1522 aa38.78■■■■□ 3.8
CPNE1-205ENST00000401607 ERCC6L2Q5T890 1561 aa38.77■■■■□ 3.8
CPNE1-205ENST00000401607 PTPRGP23470 1445 aa38.75■■■■□ 3.79
CPNE1-205ENST00000401607 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP38.72■■■■□ 3.79
CPNE1-205ENST00000401607 FGD6Q6ZV73 1430 aa38.68■■■■□ 3.78
CPNE1-205ENST00000401607 MYOM3Q5VTT5 1437 aa38.66■■■■□ 3.78
CPNE1-205ENST00000401607 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP38.63■■■■□ 3.777e-10■■□□□ 13.2
CPNE1-205ENST00000401607 CDK11AQ9UQ88 783 aaPredicted RBP38.59■■■■□ 3.77
CPNE1-205ENST00000401607 FAM50AQ14320 339 aaKnown RBP38.58■■■■□ 3.77
CPNE1-205ENST00000401607 ATP10BO94823 1461 aa38.57■■■■□ 3.77
CPNE1-205ENST00000401607 ZEB1P37275 1124 aaPredicted RBP38.57■■■■□ 3.76
CPNE1-205ENST00000401607 CCER1Q8TC90 406 aaPredicted RBP38.57■■■■□ 3.76
CPNE1-205ENST00000401607 TROQ12816 1431 aaPredicted RBP38.56■■■■□ 3.76
CPNE1-205ENST00000401607 UACAQ9BZF9 1416 aa38.55■■■■□ 3.76
CPNE1-205ENST00000401607 ITGAEP38570 1179 aa38.53■■■■□ 3.76
CPNE1-205ENST00000401607 ADCY10Q96PN6 1610 aa38.48■■■■□ 3.75
CPNE1-205ENST00000401607 PTPN23Q9H3S7 1636 aa38.48■■■■□ 3.75
CPNE1-205ENST00000401607 ABCC2Q92887 1545 aa38.45■■■■□ 3.75
CPNE1-205ENST00000401607 TCOF1Q13428 1488 aaKnown RBP38.43■■■■□ 3.74
CPNE1-205ENST00000401607 OSCARQ8IYS5 282 aa38.42■■■■□ 3.74
CPNE1-205ENST00000401607 KIF14Q15058 1648 aa38.41■■■■□ 3.74
CPNE1-205ENST00000401607 MIA2Q96PC5 1412 aa38.41■■■■□ 3.74
CPNE1-205ENST00000401607 PLEKHD1A6NEE1 506 aa38.35■■■■□ 3.73
CPNE1-205ENST00000401607 UHRF1BP1LA0JNW5 1464 aa38.33■■■■□ 3.73
CPNE1-205ENST00000401607 PTPRKQ15262 1439 aa38.29■■■■□ 3.72
CPNE1-205ENST00000401607 ITSN2Q9NZM3 1697 aa38.27■■■■□ 3.72
CPNE1-205ENST00000401607 ABCC10Q5T3U5 1492 aa38.25■■■■□ 3.71
CPNE1-205ENST00000401607 SETD5Q9C0A6 1442 aa38.25■■■■□ 3.71
CPNE1-205ENST00000401607 GPATCH8Q9UKJ3 1502 aaKnown RBP38.25■■■■□ 3.71
CPNE1-205ENST00000401607 RAB3GAP2Q9H2M9 1393 aa38.24■■■■□ 3.71
CPNE1-205ENST00000401607 KDM5BQ9UGL1 1544 aa38.2■■■■□ 3.7
CPNE1-205ENST00000401607 ZCCHC11Q5TAX3 1644 aaKnown RBP38.2■■■■□ 3.7
CPNE1-205ENST00000401607 DHX57Q6P158 1386 aaKnown RBP38.19■■■■□ 3.7
CPNE1-205ENST00000401607 CDC42BPAQ5VT25 1732 aa38.16■■■■□ 3.7
CPNE1-205ENST00000401607 ZNF644Q9H582 1327 aaPredicted RBP38.1■■■■□ 3.69
CPNE1-205ENST00000401607 HFM1A2PYH4 1435 aa38.09■■■■□ 3.69
CPNE1-205ENST00000401607 CFDP1Q9UEE9 299 aaPredicted RBP38.09■■■■□ 3.69
CPNE1-205ENST00000401607 CAMSAP2Q08AD1 1489 aa38.09■■■■□ 3.69
CPNE1-205ENST00000401607 DNMT1P26358 1616 aaKnown RBP38.08■■■■□ 3.69
CPNE1-205ENST00000401607 DAPK1P53355 1430 aa38.04■■■■□ 3.68
CPNE1-205ENST00000401607 NAIPQ13075 1403 aa38.02■■■■□ 3.68
CPNE1-205ENST00000401607 ABCC5O15440 1437 aa38.01■■■■□ 3.68
CPNE1-205ENST00000401607 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP38■■■■□ 3.671e-38■■□□□ 13.2
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms