RNA–Protein interactions for RNA: ENST00000400053.8

PTPRM-202, Transcript of protein tyrosine phosphatase, receptor type M, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPRM, Length 5,292 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRM-202ENST00000400053 MTUS2Q5JR59 1369 aa11.89□□□□□ -0.51
PTPRM-202ENST00000400053 CCDC88BA6NC98 1476 aa11.89□□□□□ -0.51
PTPRM-202ENST00000400053 ZNF777Q9ULD5 760 aaPredicted RBP11.89□□□□□ -0.51
PTPRM-202ENST00000400053 CDK11BP21127 795 aaKnown RBP11.89□□□□□ -0.51
PTPRM-202ENST00000400053 MRS2Q9HD23 443 aa11.88□□□□□ -0.51
PTPRM-202ENST00000400053 TMC1Q8TDI8 760 aa11.86□□□□□ -0.51
PTPRM-202ENST00000400053 CHIC2Q9UKJ5 165 aa11.84□□□□□ -0.51
PTPRM-202ENST00000400053 ABCC8Q09428 1581 aa11.82□□□□□ -0.52
PTPRM-202ENST00000400053 RTN4Q9NQC3 1192 aaKnown RBP11.81□□□□□ -0.52
PTPRM-202ENST00000400053 WIZO95785 1651 aa11.81□□□□□ -0.52
PTPRM-202ENST00000400053 ESF1Q9H501 851 aaKnown RBP11.81□□□□□ -0.52
PTPRM-202ENST00000400053 SENP3-EIF4A1A0A087X0R7 540 aa11.8□□□□□ -0.52
PTPRM-202ENST00000400053 TOP2AP11388 1531 aaKnown RBP11.8□□□□□ -0.52
PTPRM-202ENST00000400053 GOLGA6L2Q8N9W4 650 aaPredicted RBP11.8□□□□□ -0.52
PTPRM-202ENST00000400053 SUPT16HQ9Y5B9 1047 aaKnown RBP11.8□□□□□ -0.52
PTPRM-202ENST00000400053 VPS8Q8N3P4 1428 aa11.79□□□□□ -0.52
PTPRM-202ENST00000400053 CCNB3Q8WWL7 1395 aa11.75□□□□□ -0.53
PTPRM-202ENST00000400053 SMARCA2P51531 1590 aa11.74□□□□□ -0.53
PTPRM-202ENST00000400053 RRP7BPQ9NSQ0 103 aa11.74□□□□□ -0.53
PTPRM-202ENST00000400053 EIF4G2P78344 907 aaKnown RBP eCLIP11.73□□□□□ -0.53
PTPRM-202ENST00000400053 TSPY4P0CV99 314 aa11.73□□□□□ -0.53
PTPRM-202ENST00000400053 TSPY10P0CW01 314 aa11.73□□□□□ -0.53
PTPRM-202ENST00000400053 CARMIL1Q5VZK9 1371 aa11.73□□□□□ -0.53
PTPRM-202ENST00000400053 FHAD1B1AJZ9 1412 aa11.73□□□□□ -0.53
PTPRM-202ENST00000400053 LAS1LQ9Y4W2 734 aaKnown RBP11.72□□□□□ -0.53
PTPRM-202ENST00000400053 CUX2O14529 1486 aa11.71□□□□□ -0.54
PTPRM-202ENST00000400053 CHMP7Q8WUX9 453 aaPredicted RBP11.71□□□□□ -0.54
PTPRM-202ENST00000400053 KDM2AQ9Y2K7 1162 aa11.69□□□□□ -0.54
PTPRM-202ENST00000400053 TNNT2P45379 298 aaPredicted RBP11.69□□□□□ -0.54
PTPRM-202ENST00000400053 STAG3Q9UJ98 1225 aa11.69□□□□□ -0.54
PTPRM-202ENST00000400053 WDR43Q15061 677 aaKnown RBP eCLIP11.69□□□□□ -0.54
PTPRM-202ENST00000400053 DDRGK1Q96HY6 314 aa11.68□□□□□ -0.54
PTPRM-202ENST00000400053 TIMELESSQ9UNS1 1208 aa11.67□□□□□ -0.54
PTPRM-202ENST00000400053 NCLP19338 710 aaKnown RBP11.67□□□□□ -0.54
PTPRM-202ENST00000400053 SIN3AQ96ST3 1273 aa11.67□□□□□ -0.54
PTPRM-202ENST00000400053 MYH16Q9H6N6 1097 aa11.67□□□□□ -0.54
PTPRM-202ENST00000400053 TRIM44Q96DX7 344 aaPredicted RBP11.67□□□□□ -0.54
PTPRM-202ENST00000400053 NOP58Q9Y2X3 529 aaKnown RBP11.67□□□□□ -0.54
PTPRM-202ENST00000400053 KANK4Q5T7N3 995 aaPredicted RBP11.66□□□□□ -0.54
PTPRM-202ENST00000400053 SMARCA4P51532 1647 aa11.66□□□□□ -0.54
PTPRM-202ENST00000400053 B4GALNT3Q6L9W6 998 aa11.65□□□□□ -0.54
PTPRM-202ENST00000400053 RBM19Q9Y4C8 960 aaKnown RBP11.65□□□□□ -0.54
PTPRM-202ENST00000400053 PPM1GO15355 546 aaPredicted RBP11.65□□□□□ -0.54
PTPRM-202ENST00000400053 CHGAP10645 457 aaKnown RBP11.65□□□□□ -0.54
PTPRM-202ENST00000400053 PPP4R2Q9NY27 417 aa11.65□□□□□ -0.54
PTPRM-202ENST00000400053 DEKP35659 375 aaKnown RBP11.65□□□□□ -0.54
PTPRM-202ENST00000400053 ERICH6BQ5W0A0 696 aa11.65□□□□□ -0.54
PTPRM-202ENST00000400053 BECN1Q14457 450 aa11.64□□□□□ -0.55
PTPRM-202ENST00000400053 GOLGA6L22H0YM25 854 aa11.63□□□□□ -0.55
PTPRM-202ENST00000400053 PLEKHD1A6NEE1 506 aa11.63□□□□□ -0.55
PTPRM-202ENST00000400053 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.62□□□□□ -0.552e-6■■■□□ 15.5
PTPRM-202ENST00000400053 ATAD2BQ9ULI0 1458 aa11.62□□□□□ -0.55
PTPRM-202ENST00000400053 SETD5Q9C0A6 1442 aa11.61□□□□□ -0.55
PTPRM-202ENST00000400053 NAP1L5Q96NT1 182 aaPredicted RBP11.61□□□□□ -0.55
PTPRM-202ENST00000400053 CFDP1Q9UEE9 299 aaPredicted RBP11.61□□□□□ -0.55
PTPRM-202ENST00000400053 ZRSR1Q15695 479 aaKnown RBP11.6□□□□□ -0.55
PTPRM-202ENST00000400053 RUSC2Q8N2Y8 1516 aa11.59□□□□□ -0.55
PTPRM-202ENST00000400053 RAPGEF2Q9Y4G8 1499 aa11.59□□□□□ -0.55
PTPRM-202ENST00000400053 NPM1P06748 294 aaKnown RBP eCLIP11.58□□□□□ -0.56
PTPRM-202ENST00000400053 RGS3P49796 1198 aa11.57□□□□□ -0.56
PTPRM-202ENST00000400053 TSHZ2Q9NRE2 1034 aa11.56□□□□□ -0.56
PTPRM-202ENST00000400053 ARHGAP35Q9NRY4 1499 aa11.56□□□□□ -0.56
PTPRM-202ENST00000400053 RAB3GAP2Q9H2M9 1393 aa11.55□□□□□ -0.56
PTPRM-202ENST00000400053 CADPSQ9ULU8 1353 aa11.53□□□□□ -0.56
PTPRM-202ENST00000400053 FMN1Q68DA7 1419 aa11.52□□□□□ -0.56
PTPRM-202ENST00000400053 CCER2I3L3R5 266 aa11.52□□□□□ -0.56
PTPRM-202ENST00000400053 PTMAP06454 111 aaKnown RBP11.52□□□□□ -0.57
PTPRM-202ENST00000400053 DNTTIP2Q5QJE6 756 aaKnown RBP11.51□□□□□ -0.57
PTPRM-202ENST00000400053 TPRNQ4KMQ1 711 aa11.5□□□□□ -0.57
PTPRM-202ENST00000400053 NRDCO43847 1150 aa11.5□□□□□ -0.57
PTPRM-202ENST00000400053 CARD11Q9BXL7 1154 aa11.49□□□□□ -0.57
PTPRM-202ENST00000400053 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.49□□□□□ -0.57
PTPRM-202ENST00000400053 EIF4G1Q04637 1599 aaKnown RBP11.49□□□□□ -0.57
PTPRM-202ENST00000400053 RGL3Q3MIN7 710 aa11.49□□□□□ -0.57
PTPRM-202ENST00000400053 KCNH8Q96L42 1107 aa11.48□□□□□ -0.57
PTPRM-202ENST00000400053 CASC1Q6TDU7 716 aa11.48□□□□□ -0.57
PTPRM-202ENST00000400053 TDRD9Q8NDG6 1382 aaKnown RBP11.47□□□□□ -0.57
PTPRM-202ENST00000400053 PDS5BQ9NTI5 1447 aa11.47□□□□□ -0.57
PTPRM-202ENST00000400053 PPP1R15AO75807 674 aaPredicted RBP11.47□□□□□ -0.57
PTPRM-202ENST00000400053 DHX57Q6P158 1386 aaKnown RBP11.47□□□□□ -0.57
PTPRM-202ENST00000400053 GOLGA6L6A8MZA4 724 aa11.47□□□□□ -0.57
PTPRM-202ENST00000400053 NEUROD2Q15784 382 aa11.47□□□□□ -0.57
PTPRM-202ENST00000400053 ARID4BQ4LE39 1312 aaPredicted RBP11.46□□□□□ -0.57
PTPRM-202ENST00000400053 SENP3Q9H4L4 574 aaPredicted RBP11.44□□□□□ -0.58
PTPRM-202ENST00000400053 FRAT1Q92837 279 aaPredicted RBP11.44□□□□□ -0.58
PTPRM-202ENST00000400053 HSPA5P11021 654 aaKnown RBP11.44□□□□□ -0.58
PTPRM-202ENST00000400053 FHOD3Q2V2M9 1422 aa11.43□□□□□ -0.58
PTPRM-202ENST00000400053 CDCA8Q53HL2 280 aa11.43□□□□□ -0.58
PTPRM-202ENST00000400053 CHMP4BQ9H444 224 aaKnown RBP11.43□□□□□ -0.58
PTPRM-202ENST00000400053 L1TD1Q5T7N2 865 aaKnown RBP11.43□□□□□ -0.58
PTPRM-202ENST00000400053 PLCB2Q00722 1185 aa11.42□□□□□ -0.58
PTPRM-202ENST00000400053 KNSTRNQ9Y448 316 aa11.42□□□□□ -0.58
PTPRM-202ENST00000400053 FTSJ3Q8IY81 847 aaKnown RBP11.42□□□□□ -0.58
PTPRM-202ENST00000400053 CFAP53Q96M91 514 aa11.42□□□□□ -0.58
PTPRM-202ENST00000400053 ERCC6Q03468 1493 aa11.42□□□□□ -0.58
PTPRM-202ENST00000400053 A0A0G2JS52 829 aa11.41□□□□□ -0.58
PTPRM-202ENST00000400053 SPRYD3Q8NCJ5 442 aa11.41□□□□□ -0.58
PTPRM-202ENST00000400053 MPHOSPH9Q99550 1183 aa11.4□□□□□ -0.58
PTPRM-202ENST00000400053 IGF1RP08069 1367 aa11.38□□□□□ -0.59
PTPRM-202ENST00000400053 HSP90AB1P08238 724 aaKnown RBP11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms