RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 TIMELESSQ9UNS1 1208 aa12.48□□□□□ -0.41
COL28A1-201ENST00000399429 PAK3O75914 559 aaPredicted RBP12.47□□□□□ -0.41
COL28A1-201ENST00000399429 P3H3Q8IVL6 736 aa12.46□□□□□ -0.41
COL28A1-201ENST00000399429 GOLGA3Q08378 1498 aa12.45□□□□□ -0.42
COL28A1-201ENST00000399429 RB1CC1Q8TDY2 1594 aa12.45□□□□□ -0.42
COL28A1-201ENST00000399429 SOGA1O94964 1423 aa12.45□□□□□ -0.42
COL28A1-201ENST00000399429 DDRGK1Q96HY6 314 aa12.45□□□□□ -0.42
COL28A1-201ENST00000399429 SCRIBQ14160 1630 aa12.44□□□□□ -0.42
COL28A1-201ENST00000399429 TMC1Q8TDI8 760 aa12.43□□□□□ -0.42
COL28A1-201ENST00000399429 DHX57Q6P158 1386 aaKnown RBP12.43□□□□□ -0.42
COL28A1-201ENST00000399429 WRNQ14191 1432 aaPredicted RBP eCLIP12.42□□□□□ -0.42
COL28A1-201ENST00000399429 VSIG10Q8N0Z9 540 aa12.41□□□□□ -0.42
COL28A1-201ENST00000399429 ARID4BQ4LE39 1312 aaPredicted RBP12.4□□□□□ -0.42
COL28A1-201ENST00000399429 EIF4G2P78344 907 aaKnown RBP eCLIP12.39□□□□□ -0.43
COL28A1-201ENST00000399429 KANK4Q5T7N3 995 aaPredicted RBP12.37□□□□□ -0.43
COL28A1-201ENST00000399429 BRPF3Q9ULD4 1205 aa12.37□□□□□ -0.43
COL28A1-201ENST00000399429 PKNOX2Q96KN3 472 aa12.36□□□□□ -0.43
COL28A1-201ENST00000399429 EEA1Q15075 1411 aa12.35□□□□□ -0.43
COL28A1-201ENST00000399429 BAZ1BQ9UIG0 1483 aaKnown RBP12.34□□□□□ -0.43
COL28A1-201ENST00000399429 GSE1Q14687 1217 aa12.34□□□□□ -0.43
COL28A1-201ENST00000399429 RSPH6AQ9H0K4 717 aa12.33□□□□□ -0.44
COL28A1-201ENST00000399429 USP35Q9P2H5 1018 aa12.33□□□□□ -0.44
COL28A1-201ENST00000399429 CCDC88BA6NC98 1476 aa12.33□□□□□ -0.44
COL28A1-201ENST00000399429 CCNB3Q8WWL7 1395 aa12.32□□□□□ -0.44
COL28A1-201ENST00000399429 SLC4A3P48751 1232 aa12.31□□□□□ -0.44
COL28A1-201ENST00000399429 VPS8Q8N3P4 1428 aa12.31□□□□□ -0.44
COL28A1-201ENST00000399429 CANXP27824 592 aaKnown RBP12.31□□□□□ -0.44
COL28A1-201ENST00000399429 UBE2Q2Q8WVN8 375 aa12.31□□□□□ -0.44
COL28A1-201ENST00000399429 HSP90AA1P07900 732 aaKnown RBP12.3□□□□□ -0.44
COL28A1-201ENST00000399429 TRIM44Q96DX7 344 aaPredicted RBP12.3□□□□□ -0.44
COL28A1-201ENST00000399429 CHIC2Q9UKJ5 165 aa12.3□□□□□ -0.44
COL28A1-201ENST00000399429 ANP32BQ92688 251 aaKnown RBP12.29□□□□□ -0.44
COL28A1-201ENST00000399429 PPP1R15AO75807 674 aaPredicted RBP12.29□□□□□ -0.44
COL28A1-201ENST00000399429 RAB3GAP2Q9H2M9 1393 aa12.29□□□□□ -0.44
COL28A1-201ENST00000399429 RGS3P49796 1198 aa12.28□□□□□ -0.44
COL28A1-201ENST00000399429 UPF2Q9HAU5 1272 aaKnown RBP12.28□□□□□ -0.44
COL28A1-201ENST00000399429 PNNQ9H307 717 aaKnown RBP12.28□□□□□ -0.44
COL28A1-201ENST00000399429 HSP90AA2PQ14568 343 aaPredicted RBP12.27□□□□□ -0.44
COL28A1-201ENST00000399429 CEP164Q9UPV0 1460 aa12.27□□□□□ -0.44
COL28A1-201ENST00000399429 TCERG1O14776 1098 aaKnown RBP12.26□□□□□ -0.45
COL28A1-201ENST00000399429 ABCC8Q09428 1581 aa12.26□□□□□ -0.45
COL28A1-201ENST00000399429 PDE4AP27815 886 aa12.25□□□□□ -0.45
COL28A1-201ENST00000399429 HSPA5P11021 654 aaKnown RBP12.24□□□□□ -0.45
COL28A1-201ENST00000399429 ABCC9O60706 1549 aa12.24□□□□□ -0.45
COL28A1-201ENST00000399429 BECN1Q14457 450 aa12.24□□□□□ -0.45
COL28A1-201ENST00000399429 CECR2Q9BXF3 1484 aa12.23□□□□□ -0.45
COL28A1-201ENST00000399429 PABPN1Q86U42 306 aaKnown RBP eCLIP12.22□□□□□ -0.45
COL28A1-201ENST00000399429 GZF1Q9H116 711 aaPredicted RBP12.21□□□□□ -0.45
COL28A1-201ENST00000399429 RRP7BPQ9NSQ0 103 aa12.21□□□□□ -0.46
COL28A1-201ENST00000399429 FRAT1Q92837 279 aaPredicted RBP12.2□□□□□ -0.46
COL28A1-201ENST00000399429 NUDCQ9Y266 331 aa12.2□□□□□ -0.46
COL28A1-201ENST00000399429 SLKQ9H2G2 1235 aaPredicted RBP12.2□□□□□ -0.46
COL28A1-201ENST00000399429 SETD5Q9C0A6 1442 aa12.2□□□□□ -0.46
COL28A1-201ENST00000399429 ARID3CA6NKF2 412 aa12.2□□□□□ -0.46
COL28A1-201ENST00000399429 L1TD1Q5T7N2 865 aaKnown RBP12.2□□□□□ -0.46
COL28A1-201ENST00000399429 NFKBIBQ15653 356 aa12.19□□□□□ -0.46
COL28A1-201ENST00000399429 ARID3AQ99856 593 aa12.19□□□□□ -0.46
COL28A1-201ENST00000399429 RUSC2Q8N2Y8 1516 aa12.19□□□□□ -0.46
COL28A1-201ENST00000399429 SLC4A1APQ9BWU0 796 aaKnown RBP12.17□□□□□ -0.46
COL28A1-201ENST00000399429 SPRYD3Q8NCJ5 442 aa12.17□□□□□ -0.46
COL28A1-201ENST00000399429 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.17□□□□□ -0.46
COL28A1-201ENST00000399429 ZBED9Q6R2W3 1325 aa12.15□□□□□ -0.46
COL28A1-201ENST00000399429 EXOC6Q8TAG9 804 aa12.15□□□□□ -0.46
COL28A1-201ENST00000399429 RCAN3Q9UKA8 241 aa12.15□□□□□ -0.46
COL28A1-201ENST00000399429 PRKRIP1Q9H875 184 aaPredicted RBP12.13□□□□□ -0.47
COL28A1-201ENST00000399429 PODXL2Q9NZ53 605 aa12.13□□□□□ -0.47
COL28A1-201ENST00000399429 A0A0U1RQG5 324 aaPredicted RBP12.13□□□□□ -0.47
COL28A1-201ENST00000399429 KDM2AQ9Y2K7 1162 aa12.11□□□□□ -0.47
COL28A1-201ENST00000399429 GOLGA6L3A6NEY3 463 aa12.1□□□□□ -0.47
COL28A1-201ENST00000399429 MROH2BQ7Z745 1585 aa12.1□□□□□ -0.47
COL28A1-201ENST00000399429 TNNT2P45379 298 aaPredicted RBP12.09□□□□□ -0.47
COL28A1-201ENST00000399429 CCDC184Q52MB2 194 aa12.09□□□□□ -0.47
COL28A1-201ENST00000399429 FRAT2O75474 233 aaPredicted RBP12.09□□□□□ -0.47
COL28A1-201ENST00000399429 PLIN1O60240 522 aa12.08□□□□□ -0.48
COL28A1-201ENST00000399429 WDR43Q15061 677 aaKnown RBP eCLIP12.07□□□□□ -0.48
COL28A1-201ENST00000399429 AMER1Q5JTC6 1135 aaPredicted RBP12.07□□□□□ -0.48
COL28A1-201ENST00000399429 FAM43AQ8N2R8 423 aa12.07□□□□□ -0.48
COL28A1-201ENST00000399429 ZMYND15Q9H091 742 aa12.06□□□□□ -0.48
COL28A1-201ENST00000399429 MTUS2Q5JR59 1369 aa12.06□□□□□ -0.48
COL28A1-201ENST00000399429 NCLP19338 710 aaKnown RBP12.06□□□□□ -0.48
COL28A1-201ENST00000399429 FOXD1Q16676 465 aa12.05□□□□□ -0.48
COL28A1-201ENST00000399429 AKNAQ7Z591 1439 aa12.05□□□□□ -0.48
COL28A1-201ENST00000399429 RRP1P56182 461 aaKnown RBP12.04□□□□□ -0.48
COL28A1-201ENST00000399429 MYH16Q9H6N6 1097 aa12.04□□□□□ -0.48
COL28A1-201ENST00000399429 MS4A1P11836 297 aa12.04□□□□□ -0.48
COL28A1-201ENST00000399429 DNTTIP2Q5QJE6 756 aaKnown RBP12.03□□□□□ -0.48
COL28A1-201ENST00000399429 MSNP26038 577 aaKnown RBP12.03□□□□□ -0.48
COL28A1-201ENST00000399429 RAPGEF2Q9Y4G8 1499 aa12.02□□□□□ -0.48
COL28A1-201ENST00000399429 ZBTB7CA1YPR0 619 aa12.02□□□□□ -0.49
COL28A1-201ENST00000399429 BACH2Q9BYV9 841 aa12.02□□□□□ -0.49
COL28A1-201ENST00000399429 ZNF777Q9ULD5 760 aaPredicted RBP12.01□□□□□ -0.49
COL28A1-201ENST00000399429 WASHC2AQ641Q2 1341 aa12.01□□□□□ -0.49
COL28A1-201ENST00000399429 FAM161AQ3B820 660 aa11.99□□□□□ -0.49
COL28A1-201ENST00000399429 L3MBTL2Q969R5 705 aa11.99□□□□□ -0.49
COL28A1-201ENST00000399429 GOLGA6L22H0YM25 854 aa11.99□□□□□ -0.49
COL28A1-201ENST00000399429 CC2D1BQ5T0F9 858 aaKnown RBP11.99□□□□□ -0.49
COL28A1-201ENST00000399429 CARD11Q9BXL7 1154 aa11.99□□□□□ -0.49
COL28A1-201ENST00000399429 CRBNQ96SW2 442 aa11.98□□□□□ -0.49
COL28A1-201ENST00000399429 PTMAP06454 111 aaKnown RBP11.98□□□□□ -0.49
COL28A1-201ENST00000399429 WDR97A6NE52 1622 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms