RNA–Protein interactions for RNA: ENST00000399275.6

SMAD9-203, Transcript of SMAD family member 9, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SMAD9, Length 5,389 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD9-203ENST00000399275 HSP90AA2PQ14568 343 aaPredicted RBP12.76□□□□□ -0.37
SMAD9-203ENST00000399275 DDRGK1Q96HY6 314 aa12.75□□□□□ -0.37
SMAD9-203ENST00000399275 TNIKQ9UKE5 1360 aa12.75□□□□□ -0.37
SMAD9-203ENST00000399275 GOLGA3Q08378 1498 aa12.74□□□□□ -0.37
SMAD9-203ENST00000399275 CLIP1P30622 1438 aa12.73□□□□□ -0.37
SMAD9-203ENST00000399275 CANXP27824 592 aaKnown RBP12.73□□□□□ -0.37
SMAD9-203ENST00000399275 NOP58Q9Y2X3 529 aaKnown RBP12.72□□□□□ -0.37
SMAD9-203ENST00000399275 APPP05067 770 aa12.72□□□□□ -0.37
SMAD9-203ENST00000399275 PTMAP06454 111 aaKnown RBP12.72□□□□□ -0.37
SMAD9-203ENST00000399275 RSPH6AQ9H0K4 717 aa12.7□□□□□ -0.38
SMAD9-203ENST00000399275 RB1CC1Q8TDY2 1594 aa12.69□□□□□ -0.38
SMAD9-203ENST00000399275 PNNQ9H307 717 aaKnown RBP12.69□□□□□ -0.38
SMAD9-203ENST00000399275 FAM9BQ8IZU0 186 aa12.65□□□□□ -0.38
SMAD9-203ENST00000399275 LAS1LQ9Y4W2 734 aaKnown RBP12.64□□□□□ -0.39
SMAD9-203ENST00000399275 TSHZ2Q9NRE2 1034 aa12.64□□□□□ -0.39
SMAD9-203ENST00000399275 BECN1Q14457 450 aa12.63□□□□□ -0.39
SMAD9-203ENST00000399275 RBM19Q9Y4C8 960 aaKnown RBP12.62□□□□□ -0.39
SMAD9-203ENST00000399275 GOLGA6L22H0YM25 854 aa12.62□□□□□ -0.39
SMAD9-203ENST00000399275 L1TD1Q5T7N2 865 aaKnown RBP12.62□□□□□ -0.39
SMAD9-203ENST00000399275 PPP4R2Q9NY27 417 aa12.61□□□□□ -0.39
SMAD9-203ENST00000399275 ARID3AQ99856 593 aa12.61□□□□□ -0.39
SMAD9-203ENST00000399275 IRX6P78412 446 aaPredicted RBP12.6□□□□□ -0.39
SMAD9-203ENST00000399275 MSNP26038 577 aaKnown RBP12.6□□□□□ -0.39
SMAD9-203ENST00000399275 MRS2Q9HD23 443 aa12.6□□□□□ -0.39
SMAD9-203ENST00000399275 CEP164Q9UPV0 1460 aa12.59□□□□□ -0.39
SMAD9-203ENST00000399275 CCER2I3L3R5 266 aa12.58□□□□□ -0.4
SMAD9-203ENST00000399275 CHAF1AQ13111 956 aaPredicted RBP12.58□□□□□ -0.4
SMAD9-203ENST00000399275 ANO8Q9HCE9 1232 aaPredicted RBP12.56□□□□□ -0.4
SMAD9-203ENST00000399275 PDE4CQ08493 712 aa12.54□□□□□ -0.4
SMAD9-203ENST00000399275 SLC4A1APQ9BWU0 796 aaKnown RBP12.54□□□□□ -0.4
SMAD9-203ENST00000399275 TIMELESSQ9UNS1 1208 aa12.54□□□□□ -0.4
SMAD9-203ENST00000399275 EIF4G2P78344 907 aaKnown RBP eCLIP12.52□□□□□ -0.41
SMAD9-203ENST00000399275 TMC1Q8TDI8 760 aa12.52□□□□□ -0.41
SMAD9-203ENST00000399275 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.5□□□□□ -0.41
SMAD9-203ENST00000399275 CECR2Q9BXF3 1484 aa12.5□□□□□ -0.41
SMAD9-203ENST00000399275 P3H3Q8IVL6 736 aa12.5□□□□□ -0.41
SMAD9-203ENST00000399275 NACADO15069 1562 aa12.49□□□□□ -0.41
SMAD9-203ENST00000399275 WRNQ14191 1432 aaPredicted RBP eCLIP12.48□□□□□ -0.41
SMAD9-203ENST00000399275 HIRIP3Q9BW71 556 aaPredicted RBP12.47□□□□□ -0.41
SMAD9-203ENST00000399275 VPS8Q8N3P4 1428 aa12.44□□□□□ -0.42
SMAD9-203ENST00000399275 CCNB3Q8WWL7 1395 aa12.42□□□□□ -0.42
SMAD9-203ENST00000399275 MROH2BQ7Z745 1585 aa12.4□□□□□ -0.42
SMAD9-203ENST00000399275 PLCB2Q00722 1185 aa12.39□□□□□ -0.43
SMAD9-203ENST00000399275 SETQ01105 290 aaPredicted RBP12.39□□□□□ -0.43
SMAD9-203ENST00000399275 HAP1P54257 671 aaPredicted RBP12.39□□□□□ -0.43
SMAD9-203ENST00000399275 MTUS2Q5JR59 1369 aa12.38□□□□□ -0.43
SMAD9-203ENST00000399275 B4GALNT3Q6L9W6 998 aa12.38□□□□□ -0.43
SMAD9-203ENST00000399275 ZNF771Q7L3S4 317 aaPredicted RBP12.37□□□□□ -0.43
SMAD9-203ENST00000399275 SOGA1O94964 1423 aa12.37□□□□□ -0.43
SMAD9-203ENST00000399275 FANCIQ9NVI1 1328 aa12.36□□□□□ -0.43
SMAD9-203ENST00000399275 BAZ1AQ9NRL2 1556 aaPredicted RBP12.36□□□□□ -0.43
SMAD9-203ENST00000399275 USP35Q9P2H5 1018 aa12.36□□□□□ -0.43
SMAD9-203ENST00000399275 NRDCO43847 1150 aa12.35□□□□□ -0.43
SMAD9-203ENST00000399275 SIN3AQ96ST3 1273 aa12.35□□□□□ -0.43
SMAD9-203ENST00000399275 SALL2Q9Y467 1007 aaPredicted RBP12.35□□□□□ -0.43
SMAD9-203ENST00000399275 UBE2Q2Q8WVN8 375 aa12.35□□□□□ -0.43
SMAD9-203ENST00000399275 GOLGA6L6A8MZA4 724 aa12.34□□□□□ -0.43
SMAD9-203ENST00000399275 SETD5Q9C0A6 1442 aa12.34□□□□□ -0.43
SMAD9-203ENST00000399275 GOLGA6L3A6NEY3 463 aa12.33□□□□□ -0.43
SMAD9-203ENST00000399275 WDR43Q15061 677 aaKnown RBP eCLIP12.33□□□□□ -0.44
SMAD9-203ENST00000399275 ZRSR1Q15695 479 aaKnown RBP12.33□□□□□ -0.44
SMAD9-203ENST00000399275 WIZO95785 1651 aa12.33□□□□□ -0.44
SMAD9-203ENST00000399275 KIAA2012Q0VF49 1180 aa12.32□□□□□ -0.44
SMAD9-203ENST00000399275 GOLGA6L1Q8N7Z2 621 aa12.32□□□□□ -0.44
SMAD9-203ENST00000399275 CHIC2Q9UKJ5 165 aa12.31□□□□□ -0.44
SMAD9-203ENST00000399275 KIF27Q86VH2 1401 aa12.31□□□□□ -0.44
SMAD9-203ENST00000399275 ABCC8Q09428 1581 aa12.31□□□□□ -0.44
SMAD9-203ENST00000399275 PATL2C9JE40 543 aaKnown RBP12.3□□□□□ -0.44
SMAD9-203ENST00000399275 IPO9Q96P70 1041 aaKnown RBP12.3□□□□□ -0.44
SMAD9-203ENST00000399275 ZBTB7CA1YPR0 619 aa12.29□□□□□ -0.44
SMAD9-203ENST00000399275 DHX57Q6P158 1386 aaKnown RBP12.27□□□□□ -0.44
SMAD9-203ENST00000399275 CCDC88BA6NC98 1476 aa12.27□□□□□ -0.45
SMAD9-203ENST00000399275 TCERG1O14776 1098 aaKnown RBP12.26□□□□□ -0.45
SMAD9-203ENST00000399275 ZNF777Q9ULD5 760 aaPredicted RBP12.26□□□□□ -0.45
SMAD9-203ENST00000399275 FHAD1B1AJZ9 1412 aa12.25□□□□□ -0.45
SMAD9-203ENST00000399275 RAB3GAP2Q9H2M9 1393 aa12.25□□□□□ -0.45
SMAD9-203ENST00000399275 RRP7BPQ9NSQ0 103 aa12.24□□□□□ -0.45
SMAD9-203ENST00000399275 FAM13BQ9NYF5 915 aa12.24□□□□□ -0.45
SMAD9-203ENST00000399275 PDIA4P13667 645 aaKnown RBP12.22□□□□□ -0.45
SMAD9-203ENST00000399275 TPRNQ4KMQ1 711 aa12.22□□□□□ -0.45
SMAD9-203ENST00000399275 ARID3CA6NKF2 412 aa12.21□□□□□ -0.45
SMAD9-203ENST00000399275 PPP1R15AO75807 674 aaPredicted RBP12.21□□□□□ -0.45
SMAD9-203ENST00000399275 MYH16Q9H6N6 1097 aa12.21□□□□□ -0.45
SMAD9-203ENST00000399275 BAZ1BQ9UIG0 1483 aaKnown RBP12.21□□□□□ -0.46
SMAD9-203ENST00000399275 C14orf37Q86TY3 774 aa12.2□□□□□ -0.46
SMAD9-203ENST00000399275 MAP7D2Q96T17 732 aa12.2□□□□□ -0.46
SMAD9-203ENST00000399275 GZF1Q9H116 711 aaPredicted RBP12.2□□□□□ -0.46
SMAD9-203ENST00000399275 DRC7Q8IY82 874 aa12.19□□□□□ -0.46
SMAD9-203ENST00000399275 HSPA5P11021 654 aaKnown RBP12.19□□□□□ -0.46
SMAD9-203ENST00000399275 GSE1Q14687 1217 aa12.19□□□□□ -0.46
SMAD9-203ENST00000399275 STK11IPQ8N1F8 1099 aa12.19□□□□□ -0.46
SMAD9-203ENST00000399275 KANK4Q5T7N3 995 aaPredicted RBP12.18□□□□□ -0.46
SMAD9-203ENST00000399275 NOM1Q5C9Z4 860 aaKnown RBP12.18□□□□□ -0.46
SMAD9-203ENST00000399275 NOC3LQ8WTT2 800 aaKnown RBP12.17□□□□□ -0.46
SMAD9-203ENST00000399275 HSP90AB1P08238 724 aaKnown RBP12.17□□□□□ -0.46
SMAD9-203ENST00000399275 NUDCQ9Y266 331 aa12.17□□□□□ -0.46
SMAD9-203ENST00000399275 CCDC66A2RUB6 948 aa12.16□□□□□ -0.46
SMAD9-203ENST00000399275 MTERF4Q7Z6M4 381 aaKnown RBP12.16□□□□□ -0.46
SMAD9-203ENST00000399275 KDM2AQ9Y2K7 1162 aa12.16□□□□□ -0.46
SMAD9-203ENST00000399275 ARHGAP35Q9NRY4 1499 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms