RNA–Protein interactions for RNA: ENST00000396033.6

ITGB1-202, Transcript of integrin subunit beta 1, humanhuman

APPRIS P2 TSL 5 BASIC

Gene ITGB1, Length 3,784 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ITGB1-202ENST00000396033 IFT140Q96RY7 1462 aa18.47■□□□□ 0.55
ITGB1-202ENST00000396033 AQRO60306 1485 aaKnown RBP eCLIP18.47■□□□□ 0.554e-7■■■■□ 26.7
ITGB1-202ENST00000396033 KANK4Q5T7N3 995 aaPredicted RBP18.46■□□□□ 0.55
ITGB1-202ENST00000396033 FHAD1B1AJZ9 1412 aa18.45■□□□□ 0.54
ITGB1-202ENST00000396033 P3H3Q8IVL6 736 aa18.45■□□□□ 0.54
ITGB1-202ENST00000396033 CCER1Q8TC90 406 aaPredicted RBP18.44■□□□□ 0.54
ITGB1-202ENST00000396033 FHOD3Q2V2M9 1422 aa18.43■□□□□ 0.54
ITGB1-202ENST00000396033 THOC2Q8NI27 1593 aaKnown RBP18.42■□□□□ 0.54
ITGB1-202ENST00000396033 GRIN2BQ13224 1484 aa18.42■□□□□ 0.54
ITGB1-202ENST00000396033 ADAMTS12P58397 1594 aa18.41■□□□□ 0.54
ITGB1-202ENST00000396033 ZNF608Q9ULD9 1512 aaPredicted RBP18.41■□□□□ 0.54
ITGB1-202ENST00000396033 PCF11O94913 1555 aaKnown RBP18.4■□□□□ 0.54
ITGB1-202ENST00000396033 TIAM1Q13009 1591 aa18.4■□□□□ 0.54
ITGB1-202ENST00000396033 HNRNPUL2Q1KMD3 747 aaKnown RBP18.4■□□□□ 0.54
ITGB1-202ENST00000396033 MAP3K1Q13233 1512 aa18.39■□□□□ 0.53
ITGB1-202ENST00000396033 SAMD9Q5K651 1589 aa18.35■□□□□ 0.53
ITGB1-202ENST00000396033 FYCO1Q9BQS8 1478 aa18.34■□□□□ 0.53
ITGB1-202ENST00000396033 EIF4G3O43432 1585 aaKnown RBP18.34■□□□□ 0.53
ITGB1-202ENST00000396033 CFAP43Q8NDM7 1665 aa18.34■□□□□ 0.53
ITGB1-202ENST00000396033 FMN1Q68DA7 1419 aa18.33■□□□□ 0.52
ITGB1-202ENST00000396033 ATP1B4Q9UN42 357 aaPredicted RBP18.32■□□□□ 0.52
ITGB1-202ENST00000396033 CASKIN1Q8WXD9 1431 aa18.32■□□□□ 0.52
ITGB1-202ENST00000396033 LRRC9Q6ZRR7 1453 aa18.31■□□□□ 0.52
ITGB1-202ENST00000396033 RRBP1Q9P2E9 1410 aaKnown RBP18.31■□□□□ 0.52
ITGB1-202ENST00000396033 SNAPC4Q5SXM2 1469 aa18.3■□□□□ 0.52
ITGB1-202ENST00000396033 IQGAP2Q13576 1575 aa18.29■□□□□ 0.52
ITGB1-202ENST00000396033 CCNB3Q8WWL7 1395 aa18.26■□□□□ 0.51
ITGB1-202ENST00000396033 MAGI1Q96QZ7 1491 aaPredicted RBP18.21■□□□□ 0.51
ITGB1-202ENST00000396033 GRIN2AQ12879 1464 aa18.21■□□□□ 0.51
ITGB1-202ENST00000396033 SCAF1Q9H7N4 1312 aaKnown RBP18.2■□□□□ 0.5
ITGB1-202ENST00000396033 PHLDB1Q86UU1 1377 aa18.19■□□□□ 0.5
ITGB1-202ENST00000396033 UGGT2Q9NYU1 1516 aa18.17■□□□□ 0.5
ITGB1-202ENST00000396033 KIAA0586Q9BVV6 1533 aa18.17■□□□□ 0.5
ITGB1-202ENST00000396033 SYNJ2O15056 1496 aa18.16■□□□□ 0.5
ITGB1-202ENST00000396033 LRRIQ1Q96JM4 1722 aa18.15■□□□□ 0.5
ITGB1-202ENST00000396033 CHMP7Q8WUX9 453 aaPredicted RBP18.14■□□□□ 0.49
ITGB1-202ENST00000396033 MTUS2Q5JR59 1369 aa18.13■□□□□ 0.49
ITGB1-202ENST00000396033 ITGAEP38570 1179 aa18.12■□□□□ 0.49
ITGB1-202ENST00000396033 HECW1Q76N89 1606 aa18.11■□□□□ 0.49
ITGB1-202ENST00000396033 FBLN2P98095 1184 aa18.1■□□□□ 0.49
ITGB1-202ENST00000396033 KIAA0556O60303 1618 aa18.1■□□□□ 0.49
ITGB1-202ENST00000396033 CEP170Q5SW79 1584 aa18.09■□□□□ 0.49
ITGB1-202ENST00000396033 CCDC18Q5T9S5 1454 aa18.09■□□□□ 0.49
ITGB1-202ENST00000396033 DISP1Q96F81 1524 aa18.08■□□□□ 0.48
ITGB1-202ENST00000396033 FAM50AQ14320 339 aaKnown RBP18.08■□□□□ 0.48
ITGB1-202ENST00000396033 EHBP1L1Q8N3D4 1523 aa18.07■□□□□ 0.48
ITGB1-202ENST00000396033 SUPT6HQ7KZ85 1726 aaKnown RBP18.04■□□□□ 0.48
ITGB1-202ENST00000396033 NUP160Q12769 1436 aa18.04■□□□□ 0.48
ITGB1-202ENST00000396033 EPRSP07814 1512 aaKnown RBP18.03■□□□□ 0.48
ITGB1-202ENST00000396033 NCOA2Q15596 1464 aa18.03■□□□□ 0.48
ITGB1-202ENST00000396033 DHX57Q6P158 1386 aaKnown RBP18.03■□□□□ 0.48
ITGB1-202ENST00000396033 FGD6Q6ZV73 1430 aa18.02■□□□□ 0.48
ITGB1-202ENST00000396033 MAGI3Q5TCQ9 1506 aa18.01■□□□□ 0.47
ITGB1-202ENST00000396033 CDK13Q14004 1512 aaKnown RBP18■□□□□ 0.47
ITGB1-202ENST00000396033 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18■□□□□ 0.47
ITGB1-202ENST00000396033 MYOM3Q5VTT5 1437 aa17.97■□□□□ 0.47
ITGB1-202ENST00000396033 RAB3GAP2Q9H2M9 1393 aa17.97■□□□□ 0.47
ITGB1-202ENST00000396033 CLSPNQ9HAW4 1339 aa17.97■□□□□ 0.47
ITGB1-202ENST00000396033 ARID3CA6NKF2 412 aa17.97■□□□□ 0.47
ITGB1-202ENST00000396033 PELP1Q8IZL8 1130 aaKnown RBP17.97■□□□□ 0.47
ITGB1-202ENST00000396033 RAPGEF6Q8TEU7 1601 aa17.96■□□□□ 0.47
ITGB1-202ENST00000396033 SETD5Q9C0A6 1442 aa17.96■□□□□ 0.47
ITGB1-202ENST00000396033 ARHGEF11O15085 1522 aa17.95■□□□□ 0.46
ITGB1-202ENST00000396033 CARMIL2Q6F5E8 1435 aa17.95■□□□□ 0.46
ITGB1-202ENST00000396033 JPH4Q96JJ6 628 aa17.94■□□□□ 0.46
ITGB1-202ENST00000396033 NUP153P49790 1475 aaKnown RBP17.93■□□□□ 0.46
ITGB1-202ENST00000396033 PTPN23Q9H3S7 1636 aa17.9■□□□□ 0.46
ITGB1-202ENST00000396033 CHD1O14646 1710 aa17.88■□□□□ 0.45
ITGB1-202ENST00000396033 PLB1Q6P1J6 1458 aa17.88■□□□□ 0.45
ITGB1-202ENST00000396033 CDK11AQ9UQ88 783 aaPredicted RBP17.84■□□□□ 0.45
ITGB1-202ENST00000396033 TCOF1Q13428 1488 aaKnown RBP17.84■□□□□ 0.45
ITGB1-202ENST00000396033 PTPRKQ15262 1439 aa17.84■□□□□ 0.45
ITGB1-202ENST00000396033 MIA2Q96PC5 1412 aa17.81■□□□□ 0.44
ITGB1-202ENST00000396033 MAPKBP1O60336 1514 aa17.81■□□□□ 0.44
ITGB1-202ENST00000396033 PRG4Q92954 1404 aaPredicted RBP17.81■□□□□ 0.44
ITGB1-202ENST00000396033 HFM1A2PYH4 1435 aa17.8■□□□□ 0.44
ITGB1-202ENST00000396033 ZNF316A6NFI3 1004 aaPredicted RBP17.8■□□□□ 0.44
ITGB1-202ENST00000396033 ABCA8O94911 1581 aa17.79■□□□□ 0.44
ITGB1-202ENST00000396033 TROQ12816 1431 aaPredicted RBP17.78■□□□□ 0.44
ITGB1-202ENST00000396033 DIEXFQ68CQ4 756 aaKnown RBP17.75■□□□□ 0.43
ITGB1-202ENST00000396033 NAIPQ13075 1403 aa17.74■□□□□ 0.43
ITGB1-202ENST00000396033 PTPRGP23470 1445 aa17.74■□□□□ 0.43
ITGB1-202ENST00000396033 SHROOM2Q13796 1616 aa17.73■□□□□ 0.43
ITGB1-202ENST00000396033 ADCY10Q96PN6 1610 aa17.73■□□□□ 0.43
ITGB1-202ENST00000396033 KIF14Q15058 1648 aa17.71■□□□□ 0.43
ITGB1-202ENST00000396033 CHIC2Q9UKJ5 165 aa17.71■□□□□ 0.43
ITGB1-202ENST00000396033 ATP10BO94823 1461 aa17.7■□□□□ 0.42
ITGB1-202ENST00000396033 ITSN2Q9NZM3 1697 aa17.7■□□□□ 0.42
ITGB1-202ENST00000396033 GCC2Q8IWJ2 1684 aa17.69■□□□□ 0.42
ITGB1-202ENST00000396033 AKNAQ7Z591 1439 aa17.68■□□□□ 0.42
ITGB1-202ENST00000396033 RRP7BPQ9NSQ0 103 aa17.68■□□□□ 0.42
ITGB1-202ENST00000396033 UACAQ9BZF9 1416 aa17.68■□□□□ 0.42
ITGB1-202ENST00000396033 PLEKHD1A6NEE1 506 aa17.67■□□□□ 0.42
ITGB1-202ENST00000396033 DAPK1P53355 1430 aa17.67■□□□□ 0.42
ITGB1-202ENST00000396033 DNMT1P26358 1616 aaKnown RBP17.67■□□□□ 0.42
ITGB1-202ENST00000396033 ZNF644Q9H582 1327 aaPredicted RBP17.66■□□□□ 0.42
ITGB1-202ENST00000396033 GPATCH8Q9UKJ3 1502 aaKnown RBP17.66■□□□□ 0.42
ITGB1-202ENST00000396033 CFDP1Q9UEE9 299 aaPredicted RBP17.65■□□□□ 0.42
ITGB1-202ENST00000396033 ERCC6L2Q5T890 1561 aa17.64■□□□□ 0.41
ITGB1-202ENST00000396033 SIN3AQ96ST3 1273 aa17.64■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 10 ms