RNA–Protein interactions for RNA: ENST00000394989.6

SNCA-204, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 3,167 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-204ENST00000394989 TIAM1Q13009 1591 aa21.03■□□□□ 0.96
SNCA-204ENST00000394989 RRBP1Q9P2E9 1410 aaKnown RBP21.02■□□□□ 0.96
SNCA-204ENST00000394989 MAP3K1Q13233 1512 aa21.01■□□□□ 0.95
SNCA-204ENST00000394989 PCF11O94913 1555 aaKnown RBP20.98■□□□□ 0.95
SNCA-204ENST00000394989 P3H3Q8IVL6 736 aa20.97■□□□□ 0.95
SNCA-204ENST00000394989 EFCAB5A4FU69 1503 aa20.97■□□□□ 0.95
SNCA-204ENST00000394989 FHAD1B1AJZ9 1412 aa20.97■□□□□ 0.95
SNCA-204ENST00000394989 FHOD3Q2V2M9 1422 aa20.97■□□□□ 0.95
SNCA-204ENST00000394989 CFAP43Q8NDM7 1665 aa20.93■□□□□ 0.94
SNCA-204ENST00000394989 LRRC9Q6ZRR7 1453 aa20.93■□□□□ 0.94
SNCA-204ENST00000394989 MRC2Q9UBG0 1479 aa20.93■□□□□ 0.94
SNCA-204ENST00000394989 CCNB3Q8WWL7 1395 aa20.91■□□□□ 0.94
SNCA-204ENST00000394989 PBRM1Q86U86 1689 aa20.88■□□□□ 0.93
SNCA-204ENST00000394989 FYCO1Q9BQS8 1478 aa20.88■□□□□ 0.93
SNCA-204ENST00000394989 SAMD9Q5K651 1589 aa20.87■□□□□ 0.93
SNCA-204ENST00000394989 AQRO60306 1485 aaKnown RBP eCLIP20.86■□□□□ 0.93
SNCA-204ENST00000394989 CASKIN1Q8WXD9 1431 aa20.86■□□□□ 0.93
SNCA-204ENST00000394989 PHLDB1Q86UU1 1377 aa20.83■□□□□ 0.92
SNCA-204ENST00000394989 SNAPC4Q5SXM2 1469 aa20.82■□□□□ 0.92
SNCA-204ENST00000394989 WDR62O43379 1518 aa20.82■□□□□ 0.92
SNCA-204ENST00000394989 DHX57Q6P158 1386 aaKnown RBP20.8■□□□□ 0.92
SNCA-204ENST00000394989 FMN1Q68DA7 1419 aa20.8■□□□□ 0.92
SNCA-204ENST00000394989 ADAMTS12P58397 1594 aa20.79■□□□□ 0.92
SNCA-204ENST00000394989 ATP1B4Q9UN42 357 aaPredicted RBP20.79■□□□□ 0.92
SNCA-204ENST00000394989 ZNF608Q9ULD9 1512 aaPredicted RBP20.77■□□□□ 0.91
SNCA-204ENST00000394989 LRRIQ1Q96JM4 1722 aa20.76■□□□□ 0.91
SNCA-204ENST00000394989 IFT140Q96RY7 1462 aa20.75■□□□□ 0.91
SNCA-204ENST00000394989 GRIN2BQ13224 1484 aa20.74■□□□□ 0.91
SNCA-204ENST00000394989 ITGAEP38570 1179 aa20.73■□□□□ 0.91
SNCA-204ENST00000394989 CLSPNQ9HAW4 1339 aa20.71■□□□□ 0.91
SNCA-204ENST00000394989 IQGAP2Q13576 1575 aa20.69■□□□□ 0.9
SNCA-204ENST00000394989 DIEXFQ68CQ4 756 aaKnown RBP20.68■□□□□ 0.9
SNCA-204ENST00000394989 ZNF316A6NFI3 1004 aaPredicted RBP20.67■□□□□ 0.9
SNCA-204ENST00000394989 THOC2Q8NI27 1593 aaKnown RBP20.66■□□□□ 0.9
SNCA-204ENST00000394989 RAB3GAP2Q9H2M9 1393 aa20.65■□□□□ 0.9
SNCA-204ENST00000394989 ERCC6Q03468 1493 aa20.64■□□□□ 0.9
SNCA-204ENST00000394989 EIF4G3O43432 1585 aaKnown RBP20.64■□□□□ 0.9
SNCA-204ENST00000394989 FAM50AQ14320 339 aaKnown RBP20.62■□□□□ 0.89
SNCA-204ENST00000394989 MTUS2Q5JR59 1369 aa20.6■□□□□ 0.89
SNCA-204ENST00000394989 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP20.59■□□□□ 0.89
SNCA-204ENST00000394989 SETD5Q9C0A6 1442 aa20.59■□□□□ 0.89
SNCA-204ENST00000394989 FGD6Q6ZV73 1430 aa20.58■□□□□ 0.88
SNCA-204ENST00000394989 UGGT2Q9NYU1 1516 aa20.57■□□□□ 0.88
SNCA-204ENST00000394989 MAGI3Q5TCQ9 1506 aa20.57■□□□□ 0.88
SNCA-204ENST00000394989 NEUROD1Q13562 356 aa20.57■□□□□ 0.88
SNCA-204ENST00000394989 MAPKBP1O60336 1514 aa20.56■□□□□ 0.88
SNCA-204ENST00000394989 NCOA2Q15596 1464 aa20.55■□□□□ 0.88
SNCA-204ENST00000394989 EHBP1L1Q8N3D4 1523 aa20.54■□□□□ 0.88
SNCA-204ENST00000394989 GRIN2AQ12879 1464 aa20.54■□□□□ 0.88
SNCA-204ENST00000394989 HECW1Q76N89 1606 aa20.53■□□□□ 0.88
SNCA-204ENST00000394989 SUPT6HQ7KZ85 1726 aaKnown RBP20.53■□□□□ 0.88
SNCA-204ENST00000394989 KIAA0586Q9BVV6 1533 aa20.53■□□□□ 0.88
SNCA-204ENST00000394989 CCDC18Q5T9S5 1454 aa20.53■□□□□ 0.88
SNCA-204ENST00000394989 ARHGEF11O15085 1522 aa20.51■□□□□ 0.87
SNCA-204ENST00000394989 GTF3C3Q9Y5Q9 886 aa20.5■□□□□ 0.87
SNCA-204ENST00000394989 DISP1Q96F81 1524 aa20.5■□□□□ 0.87
SNCA-204ENST00000394989 EPRSP07814 1512 aaKnown RBP20.49■□□□□ 0.87
SNCA-204ENST00000394989 MYOM3Q5VTT5 1437 aa20.49■□□□□ 0.87
SNCA-204ENST00000394989 KIAA0556O60303 1618 aa20.48■□□□□ 0.87
SNCA-204ENST00000394989 MAGI1Q96QZ7 1491 aaPredicted RBP20.48■□□□□ 0.87
SNCA-204ENST00000394989 ACIN1Q9UKV3 1341 aaKnown RBP20.47■□□□□ 0.87
SNCA-204ENST00000394989 PTPRKQ15262 1439 aa20.47■□□□□ 0.87
SNCA-204ENST00000394989 CDK13Q14004 1512 aaKnown RBP20.46■□□□□ 0.87
SNCA-204ENST00000394989 CEP170Q5SW79 1584 aa20.44■□□□□ 0.86
SNCA-204ENST00000394989 SYNJ2O15056 1496 aa20.43■□□□□ 0.86
SNCA-204ENST00000394989 PTPN23Q9H3S7 1636 aa20.42■□□□□ 0.86
SNCA-204ENST00000394989 HFM1A2PYH4 1435 aa20.38■□□□□ 0.85
SNCA-204ENST00000394989 ARID3CA6NKF2 412 aa20.38■□□□□ 0.85
SNCA-204ENST00000394989 CHMP7Q8WUX9 453 aaPredicted RBP20.38■□□□□ 0.85
SNCA-204ENST00000394989 NUP153P49790 1475 aaKnown RBP20.37■□□□□ 0.85
SNCA-204ENST00000394989 TCOF1Q13428 1488 aaKnown RBP20.36■□□□□ 0.85
SNCA-204ENST00000394989 RAPGEF6Q8TEU7 1601 aa20.35■□□□□ 0.85
SNCA-204ENST00000394989 NUP160Q12769 1436 aa20.34■□□□□ 0.85
SNCA-204ENST00000394989 NAIPQ13075 1403 aa20.33■□□□□ 0.84
SNCA-204ENST00000394989 FBLN2P98095 1184 aa20.32■□□□□ 0.84
SNCA-204ENST00000394989 SIN3AQ96ST3 1273 aa20.32■□□□□ 0.84
SNCA-204ENST00000394989 MIER1Q8N108 512 aa20.31■□□□□ 0.84
SNCA-204ENST00000394989 YTHDC1Q96MU7 727 aaKnown RBP20.3■□□□□ 0.84
SNCA-204ENST00000394989 MIA2Q96PC5 1412 aa20.28■□□□□ 0.84
SNCA-204ENST00000394989 PLB1Q6P1J6 1458 aa20.26■□□□□ 0.83
SNCA-204ENST00000394989 UACAQ9BZF9 1416 aa20.26■□□□□ 0.83
SNCA-204ENST00000394989 JPH4Q96JJ6 628 aa20.24■□□□□ 0.83
SNCA-204ENST00000394989 CENPBP07199 599 aaPredicted RBP20.23■□□□□ 0.83
SNCA-204ENST00000394989 GCC2Q8IWJ2 1684 aa20.23■□□□□ 0.83
SNCA-204ENST00000394989 CARMIL2Q6F5E8 1435 aa20.2■□□□□ 0.82
SNCA-204ENST00000394989 CHIC2Q9UKJ5 165 aa20.2■□□□□ 0.82
SNCA-204ENST00000394989 KDM6BO15054 1643 aa20.19■□□□□ 0.82
SNCA-204ENST00000394989 RRP7BPQ9NSQ0 103 aa20.19■□□□□ 0.82
SNCA-204ENST00000394989 AKNAQ7Z591 1439 aa20.19■□□□□ 0.82
SNCA-204ENST00000394989 PRG4Q92954 1404 aaPredicted RBP20.19■□□□□ 0.82
SNCA-204ENST00000394989 TIMELESSQ9UNS1 1208 aa20.18■□□□□ 0.82
SNCA-204ENST00000394989 TROQ12816 1431 aaPredicted RBP20.16■□□□□ 0.82
SNCA-204ENST00000394989 CDK11AQ9UQ88 783 aaPredicted RBP20.15■□□□□ 0.82
SNCA-204ENST00000394989 ZNF644Q9H582 1327 aaPredicted RBP20.14■□□□□ 0.81
SNCA-204ENST00000394989 DENND4BO75064 1496 aaPredicted RBP20.14■□□□□ 0.81
SNCA-204ENST00000394989 DNMT1P26358 1616 aaKnown RBP20.14■□□□□ 0.81
SNCA-204ENST00000394989 KIF14Q15058 1648 aa20.14■□□□□ 0.81
SNCA-204ENST00000394989 ABCA8O94911 1581 aa20.14■□□□□ 0.81
SNCA-204ENST00000394989 DAPK1P53355 1430 aa20.13■□□□□ 0.81
SNCA-204ENST00000394989 ADCY10Q96PN6 1610 aa20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms