RNA–Protein interactions for RNA: ENST00000394892.2

ATG4A-205, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 935 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-205ENST00000394892 JPH4Q96JJ6 628 aa15.41■□□□□ 0.06
ATG4A-205ENST00000394892 PRG4Q92954 1404 aaPredicted RBP15.39■□□□□ 0.05
ATG4A-205ENST00000394892 RUSC2Q8N2Y8 1516 aa15.36■□□□□ 0.05
ATG4A-205ENST00000394892 CARMIL1Q5VZK9 1371 aa15.36■□□□□ 0.05
ATG4A-205ENST00000394892 KIAA0586Q9BVV6 1533 aa15.33■□□□□ 0.04
ATG4A-205ENST00000394892 CUL7Q14999 1698 aa15.28■□□□□ 0.04
ATG4A-205ENST00000394892 NPM1P06748 294 aaKnown RBP eCLIP15.22■□□□□ 0.03
ATG4A-205ENST00000394892 RAPGEF2Q9Y4G8 1499 aa15.2■□□□□ 0.02
ATG4A-205ENST00000394892 DISP1Q96F81 1524 aa15.17■□□□□ 0.02
ATG4A-205ENST00000394892 ADCY10Q96PN6 1610 aa15.16■□□□□ 0.02
ATG4A-205ENST00000394892 PTPRGP23470 1445 aa15.16■□□□□ 0.02
ATG4A-205ENST00000394892 PRXQ9BXM0 1461 aa15.14■□□□□ 0.01
ATG4A-205ENST00000394892 TNIKQ9UKE5 1360 aa15.14■□□□□ 0.01
ATG4A-205ENST00000394892 FAM69CQ0P6D2 419 aa15.14■□□□□ 0.01
ATG4A-205ENST00000394892 IQGAP2Q13576 1575 aa15.14■□□□□ 0.01
ATG4A-205ENST00000394892 TTBK1Q5TCY1 1321 aaPredicted RBP15.14■□□□□ 0.01
ATG4A-205ENST00000394892 UGGT2Q9NYU1 1516 aa15.11■□□□□ 0.01
ATG4A-205ENST00000394892 CARMIL2Q6F5E8 1435 aa15.1■□□□□ 0.01
ATG4A-205ENST00000394892 ABCC10Q5T3U5 1492 aa15.09■□□□□ 0.01
ATG4A-205ENST00000394892 MAPKBP1O60336 1514 aa15.08■□□□□ 0.01
ATG4A-205ENST00000394892 CSRNP3Q8WYN3 585 aa15.05■□□□□ -0
ATG4A-205ENST00000394892 KIF13AQ9H1H9 1805 aa15.05■□□□□ -0
ATG4A-205ENST00000394892 ABCC2Q92887 1545 aa15.04■□□□□ -0
ATG4A-205ENST00000394892 UHRF1BP1LA0JNW5 1464 aa15.04■□□□□ -0
ATG4A-205ENST00000394892 UACAQ9BZF9 1416 aa15.04■□□□□ -0
ATG4A-205ENST00000394892 DIP2BQ9P265 1576 aa15.02■□□□□ -0
ATG4A-205ENST00000394892 KIAA0556O60303 1618 aa15.02□□□□□ -0.01
ATG4A-205ENST00000394892 ASXL2Q76L83 1435 aa15□□□□□ -0.01
ATG4A-205ENST00000394892 KDM5BQ9UGL1 1544 aa14.98□□□□□ -0.01
ATG4A-205ENST00000394892 PLB1Q6P1J6 1458 aa14.98□□□□□ -0.01
ATG4A-205ENST00000394892 FAM9AQ8IZU1 332 aaPredicted RBP14.97□□□□□ -0.01
ATG4A-205ENST00000394892 P3H3Q8IVL6 736 aa14.94□□□□□ -0.02
ATG4A-205ENST00000394892 KDM6BO15054 1643 aa14.94□□□□□ -0.02
ATG4A-205ENST00000394892 CTTNBP2Q8WZ74 1663 aa14.93□□□□□ -0.02
ATG4A-205ENST00000394892 EEA1Q15075 1411 aa14.92□□□□□ -0.02
ATG4A-205ENST00000394892 GOLGA3Q08378 1498 aa14.92□□□□□ -0.02
ATG4A-205ENST00000394892 ABCA8O94911 1581 aa14.92□□□□□ -0.02
ATG4A-205ENST00000394892 EPRSP07814 1512 aaKnown RBP14.91□□□□□ -0.02
ATG4A-205ENST00000394892 KDM4FA0A1W2PPD8 638 aa14.89□□□□□ -0.03
ATG4A-205ENST00000394892 GLI2P10070 1586 aa14.89□□□□□ -0.03
ATG4A-205ENST00000394892 ZCCHC11Q5TAX3 1644 aaKnown RBP14.88□□□□□ -0.03
ATG4A-205ENST00000394892 COL17A1Q9UMD9 1497 aaPredicted RBP14.87□□□□□ -0.03
ATG4A-205ENST00000394892 TSPOAP1O95153 1857 aa14.85□□□□□ -0.03
ATG4A-205ENST00000394892 PPRC1Q5VV67 1664 aaKnown RBP14.85□□□□□ -0.03
ATG4A-205ENST00000394892 ARID3CA6NKF2 412 aa14.85□□□□□ -0.03
ATG4A-205ENST00000394892 SAMD9Q5K651 1589 aa14.85□□□□□ -0.03
ATG4A-205ENST00000394892 WDR7Q9Y4E6 1490 aa14.84□□□□□ -0.03
ATG4A-205ENST00000394892 RANGAP1P46060 587 aaPredicted RBP14.84□□□□□ -0.03
ATG4A-205ENST00000394892 ATP10BO94823 1461 aa14.83□□□□□ -0.03
ATG4A-205ENST00000394892 FHOD3Q2V2M9 1422 aa14.82□□□□□ -0.04
ATG4A-205ENST00000394892 EHMT2Q96KQ7 1210 aa14.81□□□□□ -0.04
ATG4A-205ENST00000394892 KCNH8Q96L42 1107 aa14.8□□□□□ -0.04
ATG4A-205ENST00000394892 KIF21BO75037 1637 aa14.8□□□□□ -0.04
ATG4A-205ENST00000394892 MAP3K4Q9Y6R4 1608 aa14.79□□□□□ -0.04
ATG4A-205ENST00000394892 NUP153P49790 1475 aaKnown RBP14.76□□□□□ -0.05
ATG4A-205ENST00000394892 TEX14Q8IWB6 1497 aa14.76□□□□□ -0.05
ATG4A-205ENST00000394892 CD109Q6YHK3 1445 aa14.75□□□□□ -0.05
ATG4A-205ENST00000394892 MAGI3Q5TCQ9 1506 aa14.73□□□□□ -0.05
ATG4A-205ENST00000394892 ADGRL1O94910 1474 aa14.73□□□□□ -0.05
ATG4A-205ENST00000394892 RAPGEF6Q8TEU7 1601 aa14.71□□□□□ -0.05
ATG4A-205ENST00000394892 UBTFP17480 764 aaKnown RBP14.71□□□□□ -0.05
ATG4A-205ENST00000394892 ARHGAP35Q9NRY4 1499 aa14.69□□□□□ -0.06
ATG4A-205ENST00000394892 ILDR1Q86SU0 546 aaPredicted RBP14.69□□□□□ -0.06
ATG4A-205ENST00000394892 EFCAB5A4FU69 1503 aa14.68□□□□□ -0.06
ATG4A-205ENST00000394892 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.65□□□□□ -0.06
ATG4A-205ENST00000394892 HNRNPUL2Q1KMD3 747 aaKnown RBP14.65□□□□□ -0.06
ATG4A-205ENST00000394892 CFAP43Q8NDM7 1665 aa14.65□□□□□ -0.06
ATG4A-205ENST00000394892 ABCA9Q8IUA7 1624 aa14.63□□□□□ -0.07
ATG4A-205ENST00000394892 CDK13Q14004 1512 aaKnown RBP14.62□□□□□ -0.07
ATG4A-205ENST00000394892 PLEKHD1A6NEE1 506 aa14.61□□□□□ -0.07
ATG4A-205ENST00000394892 ARAP3Q8WWN8 1544 aa14.61□□□□□ -0.07
ATG4A-205ENST00000394892 RAPGEF3O95398 923 aa14.59□□□□□ -0.07
ATG4A-205ENST00000394892 SENP3Q9H4L4 574 aaPredicted RBP14.57□□□□□ -0.08
ATG4A-205ENST00000394892 FMN1Q68DA7 1419 aa14.57□□□□□ -0.08
ATG4A-205ENST00000394892 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP14.56□□□□□ -0.08
ATG4A-205ENST00000394892 HECW2Q9P2P5 1572 aa14.56□□□□□ -0.08
ATG4A-205ENST00000394892 NEO1Q92859 1461 aa14.56□□□□□ -0.08
ATG4A-205ENST00000394892 PHLDB1Q86UU1 1377 aa14.55□□□□□ -0.08
ATG4A-205ENST00000394892 ATP1B4Q9UN42 357 aaPredicted RBP14.54□□□□□ -0.08
ATG4A-205ENST00000394892 TTC37Q6PGP7 1564 aa14.53□□□□□ -0.08
ATG4A-205ENST00000394892 FRMPD1Q5SYB0 1578 aa14.52□□□□□ -0.08
ATG4A-205ENST00000394892 AKNAQ7Z591 1439 aa14.51□□□□□ -0.09
ATG4A-205ENST00000394892 FANCAO15360 1455 aa14.49□□□□□ -0.09
ATG4A-205ENST00000394892 PLCH2O75038 1416 aa14.49□□□□□ -0.09
ATG4A-205ENST00000394892 CASKIN1Q8WXD9 1431 aa14.49□□□□□ -0.09
ATG4A-205ENST00000394892 HECW1Q76N89 1606 aa14.48□□□□□ -0.09
ATG4A-205ENST00000394892 CLIP1P30622 1438 aa14.48□□□□□ -0.09
ATG4A-205ENST00000394892 TROQ12816 1431 aaPredicted RBP14.48□□□□□ -0.09
ATG4A-205ENST00000394892 DENND4BO75064 1496 aaPredicted RBP14.46□□□□□ -0.09
ATG4A-205ENST00000394892 KIF14Q15058 1648 aa14.45□□□□□ -0.1
ATG4A-205ENST00000394892 PCF11O94913 1555 aaKnown RBP14.45□□□□□ -0.1
ATG4A-205ENST00000394892 LRRIQ1Q96JM4 1722 aa14.45□□□□□ -0.1
ATG4A-205ENST00000394892 ARID4BQ4LE39 1312 aaPredicted RBP14.44□□□□□ -0.1
ATG4A-205ENST00000394892 SCAPERQ9BY12 1400 aa14.43□□□□□ -0.1
ATG4A-205ENST00000394892 YEATS2Q9ULM3 1422 aa14.43□□□□□ -0.1
ATG4A-205ENST00000394892 CDK11AQ9UQ88 783 aaPredicted RBP14.43□□□□□ -0.1
ATG4A-205ENST00000394892 EFCAB2Q5VUJ9 269 aa14.41□□□□□ -0.1
ATG4A-205ENST00000394892 FBXO41Q8TF61 875 aa14.41□□□□□ -0.1
ATG4A-205ENST00000394892 LOC105371045A0A1W2PR82 267 aa14.4□□□□□ -0.1
ATG4A-205ENST00000394892 RICTORQ6R327 1708 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms