RNA–Protein interactions for RNA: ENST00000394221.2

DHFR2-202, Transcript of dihydrofolate reductase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DHFR2, Length 4,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DHFR2-202ENST00000394221 RBM10P98175 930 aaKnown RBP11.57□□□□□ -0.56
DHFR2-202ENST00000394221 B4GALNT3Q6L9W6 998 aa11.57□□□□□ -0.56
DHFR2-202ENST00000394221 CCER2I3L3R5 266 aa11.56□□□□□ -0.56
DHFR2-202ENST00000394221 GSE1Q14687 1217 aa11.56□□□□□ -0.56
DHFR2-202ENST00000394221 FGD1P98174 961 aa11.55□□□□□ -0.56
DHFR2-202ENST00000394221 HNRNPUQ00839 825 aaKnown RBP eCLIP11.53□□□□□ -0.56
DHFR2-202ENST00000394221 NPM2Q86SE8 214 aaKnown RBP11.53□□□□□ -0.56
DHFR2-202ENST00000394221 HSP90AA1P07900 732 aaKnown RBP11.52□□□□□ -0.56
DHFR2-202ENST00000394221 PDIA4P13667 645 aaKnown RBP11.52□□□□□ -0.56
DHFR2-202ENST00000394221 AAMPQ13685 434 aa11.52□□□□□ -0.56
DHFR2-202ENST00000394221 CEP162Q5TB80 1403 aa11.52□□□□□ -0.57
DHFR2-202ENST00000394221 RRP9O43818 475 aaKnown RBP11.52□□□□□ -0.57
DHFR2-202ENST00000394221 NAP1L5Q96NT1 182 aaPredicted RBP11.51□□□□□ -0.57
DHFR2-202ENST00000394221 DHX57Q6P158 1386 aaKnown RBP11.45□□□□□ -0.58
DHFR2-202ENST00000394221 EEA1Q15075 1411 aa11.45□□□□□ -0.58
DHFR2-202ENST00000394221 FRAT1Q92837 279 aaPredicted RBP11.44□□□□□ -0.58
DHFR2-202ENST00000394221 BCL11BQ9C0K0 894 aaPredicted RBP11.44□□□□□ -0.58
DHFR2-202ENST00000394221 UBTFP17480 764 aaKnown RBP11.44□□□□□ -0.58
DHFR2-202ENST00000394221 PNNQ9H307 717 aaKnown RBP11.41□□□□□ -0.58
DHFR2-202ENST00000394221 TNIKQ9UKE5 1360 aa11.38□□□□□ -0.59
DHFR2-202ENST00000394221 PPP1R15AO75807 674 aaPredicted RBP11.37□□□□□ -0.59
DHFR2-202ENST00000394221 DDRGK1Q96HY6 314 aa11.37□□□□□ -0.59
DHFR2-202ENST00000394221 NFKBIBQ15653 356 aa11.36□□□□□ -0.59
DHFR2-202ENST00000394221 SCRIBQ14160 1630 aa11.34□□□□□ -0.59
DHFR2-202ENST00000394221 RANGAP1P46060 587 aaPredicted RBP11.34□□□□□ -0.59
DHFR2-202ENST00000394221 RB1CC1Q8TDY2 1594 aa11.34□□□□□ -0.59
DHFR2-202ENST00000394221 NACADO15069 1562 aa11.33□□□□□ -0.6
DHFR2-202ENST00000394221 TAF7LQ5H9L4 462 aa11.32□□□□□ -0.6
DHFR2-202ENST00000394221 RRAGDQ9NQL2 400 aaPredicted RBP11.32□□□□□ -0.6
DHFR2-202ENST00000394221 CALD1Q05682 793 aaKnown RBP11.3□□□□□ -0.6
DHFR2-202ENST00000394221 DCAF11Q8TEB1 546 aa11.29□□□□□ -0.6
DHFR2-202ENST00000394221 RSF1Q96T23 1441 aaPredicted RBP11.29□□□□□ -0.6
DHFR2-202ENST00000394221 L1TD1Q5T7N2 865 aaKnown RBP11.28□□□□□ -0.6
DHFR2-202ENST00000394221 HIRIP3Q9BW71 556 aaPredicted RBP11.28□□□□□ -0.6
DHFR2-202ENST00000394221 RGS3P49796 1198 aa11.28□□□□□ -0.6
DHFR2-202ENST00000394221 SIN3AQ96ST3 1273 aa11.28□□□□□ -0.6
DHFR2-202ENST00000394221 TCERG1O14776 1098 aaKnown RBP11.26□□□□□ -0.61
DHFR2-202ENST00000394221 ARID4BQ4LE39 1312 aaPredicted RBP11.26□□□□□ -0.61
DHFR2-202ENST00000394221 PDE4AP27815 886 aa11.25□□□□□ -0.61
DHFR2-202ENST00000394221 BBXQ8WY36 941 aaPredicted RBP11.25□□□□□ -0.61
DHFR2-202ENST00000394221 PDCL3Q9H2J4 239 aa11.25□□□□□ -0.61
DHFR2-202ENST00000394221 NAP1L2Q9ULW6 460 aaPredicted RBP11.23□□□□□ -0.61
DHFR2-202ENST00000394221 CANXP27824 592 aaKnown RBP11.22□□□□□ -0.61
DHFR2-202ENST00000394221 CLCN1P35523 988 aa11.22□□□□□ -0.61
DHFR2-202ENST00000394221 ZNF326Q5BKZ1 582 aaKnown RBP11.22□□□□□ -0.61
DHFR2-202ENST00000394221 NCLP19338 710 aaKnown RBP11.21□□□□□ -0.61
DHFR2-202ENST00000394221 CENPJQ9HC77 1338 aaPredicted RBP11.21□□□□□ -0.62
DHFR2-202ENST00000394221 FAM9BQ8IZU0 186 aa11.21□□□□□ -0.62
DHFR2-202ENST00000394221 PRDM4Q9UKN5 801 aa11.21□□□□□ -0.62
DHFR2-202ENST00000394221 TPM2P07951 284 aa11.2□□□□□ -0.62
DHFR2-202ENST00000394221 CNGB1Q14028 1251 aaPredicted RBP11.2□□□□□ -0.62
DHFR2-202ENST00000394221 FRAT2O75474 233 aaPredicted RBP11.19□□□□□ -0.62
DHFR2-202ENST00000394221 ARXQ96QS3 562 aa11.19□□□□□ -0.62
DHFR2-202ENST00000394221 BACH2Q9BYV9 841 aa11.19□□□□□ -0.62
DHFR2-202ENST00000394221 ZBED9Q6R2W3 1325 aa11.18□□□□□ -0.62
DHFR2-202ENST00000394221 SLC4A3P48751 1232 aa11.18□□□□□ -0.62
DHFR2-202ENST00000394221 KLHL34Q8N239 644 aa11.18□□□□□ -0.62
DHFR2-202ENST00000394221 MS4A1P11836 297 aa11.18□□□□□ -0.62
DHFR2-202ENST00000394221 PAXIP1Q6ZW49 1069 aaPredicted RBP11.17□□□□□ -0.62
DHFR2-202ENST00000394221 CHMP4BQ9H444 224 aaKnown RBP11.17□□□□□ -0.62
DHFR2-202ENST00000394221 BAZ1BQ9UIG0 1483 aaKnown RBP11.16□□□□□ -0.62
DHFR2-202ENST00000394221 GOLGA3Q08378 1498 aa11.16□□□□□ -0.62
DHFR2-202ENST00000394221 VPS8Q8N3P4 1428 aa11.14□□□□□ -0.63
DHFR2-202ENST00000394221 MRS2Q9HD23 443 aa11.14□□□□□ -0.63
DHFR2-202ENST00000394221 WDR97A6NE52 1622 aa11.14□□□□□ -0.63
DHFR2-202ENST00000394221 CLIP1P30622 1438 aa11.13□□□□□ -0.63
DHFR2-202ENST00000394221 TNNT2P45379 298 aaPredicted RBP11.12□□□□□ -0.63
DHFR2-202ENST00000394221 IPO4Q8TEX9 1081 aaKnown RBP11.11□□□□□ -0.63
DHFR2-202ENST00000394221 GOLGA6L3A6NEY3 463 aa11.11□□□□□ -0.63
DHFR2-202ENST00000394221 MAP7D2Q96T17 732 aa11.11□□□□□ -0.63
DHFR2-202ENST00000394221 POGKQ9P215 609 aa11.11□□□□□ -0.63
DHFR2-202ENST00000394221 AKNAQ7Z591 1439 aa11.1□□□□□ -0.63
DHFR2-202ENST00000394221 GTF2E1P29083 439 aaPredicted RBP11.1□□□□□ -0.63
DHFR2-202ENST00000394221 ZHX1Q9UKY1 873 aaPredicted RBP11.1□□□□□ -0.63
DHFR2-202ENST00000394221 NUDCQ9Y266 331 aa11.1□□□□□ -0.63
DHFR2-202ENST00000394221 TRIM44Q96DX7 344 aaPredicted RBP11.09□□□□□ -0.63
DHFR2-202ENST00000394221 NCAPD3P42695 1498 aa11.09□□□□□ -0.63
DHFR2-202ENST00000394221 SMAP1Q8IYB5 467 aaPredicted RBP11.08□□□□□ -0.64
DHFR2-202ENST00000394221 SOGA1O94964 1423 aa11.08□□□□□ -0.64
DHFR2-202ENST00000394221 STAC3Q96MF2 364 aa11.07□□□□□ -0.64
DHFR2-202ENST00000394221 CEP164Q9UPV0 1460 aa11.07□□□□□ -0.64
DHFR2-202ENST00000394221 ABCC8Q09428 1581 aa11.07□□□□□ -0.64
DHFR2-202ENST00000394221 SMG6Q86US8 1419 aaKnown RBP11.06□□□□□ -0.64
DHFR2-202ENST00000394221 ESPNB1AK53 854 aa11.06□□□□□ -0.64
DHFR2-202ENST00000394221 RAB3GAP2Q9H2M9 1393 aa11.04□□□□□ -0.64
DHFR2-202ENST00000394221 RSPH4AQ5TD94 716 aa11.04□□□□□ -0.64
DHFR2-202ENST00000394221 CCDC88BA6NC98 1476 aa11.04□□□□□ -0.64
DHFR2-202ENST00000394221 KIAA1211Q6ZU35 1233 aa11.04□□□□□ -0.64
DHFR2-202ENST00000394221 ANP32BQ92688 251 aaKnown RBP11.04□□□□□ -0.64
DHFR2-202ENST00000394221 FAM13BQ9NYF5 915 aa11.04□□□□□ -0.64
DHFR2-202ENST00000394221 DNAJC5BQ9UF47 199 aa11.04□□□□□ -0.64
DHFR2-202ENST00000394221 XRCC6P12956 609 aaKnown RBP eCLIP11.03□□□□□ -0.64
DHFR2-202ENST00000394221 MYH16Q9H6N6 1097 aa11.03□□□□□ -0.64
DHFR2-202ENST00000394221 CCDC184Q52MB2 194 aa11.02□□□□□ -0.64
DHFR2-202ENST00000394221 TONSLQ96HA7 1378 aa11.02□□□□□ -0.65
DHFR2-202ENST00000394221 CDK11BP21127 795 aaKnown RBP11.02□□□□□ -0.65
DHFR2-202ENST00000394221 ARID3AQ99856 593 aa11.02□□□□□ -0.65
DHFR2-202ENST00000394221 RNF123Q5XPI4 1314 aa11.02□□□□□ -0.65
DHFR2-202ENST00000394221 MAPKBP1O60336 1514 aa11.01□□□□□ -0.65
DHFR2-202ENST00000394221 EXOC6Q8TAG9 804 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms