RNA–Protein interactions for RNA: ENST00000393120.6

MKS1-203, Transcript of Meckel syndrome, type 1, humanhuman

TSL 2

Gene MKS1, Length 1,926 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-203ENST00000393120 TARBP1Q13395 1621 aaKnown RBP21.52■■□□□ 1.04
MKS1-203ENST00000393120 MRC2Q9UBG0 1479 aa21.5■■□□□ 1.03
MKS1-203ENST00000393120 TIAM1Q13009 1591 aa21.49■■□□□ 1.03
MKS1-203ENST00000393120 CTTNBP2Q8WZ74 1663 aa21.48■■□□□ 1.03
MKS1-203ENST00000393120 AQRO60306 1485 aaKnown RBP eCLIP21.46■■□□□ 1.032e-8■■■■■ 48
MKS1-203ENST00000393120 LRRC9Q6ZRR7 1453 aa21.42■■□□□ 1.02
MKS1-203ENST00000393120 CCNB3Q8WWL7 1395 aa21.41■■□□□ 1.02
MKS1-203ENST00000393120 CASKIN1Q8WXD9 1431 aa21.41■■□□□ 1.02
MKS1-203ENST00000393120 FYCO1Q9BQS8 1478 aa21.4■■□□□ 1.02
MKS1-203ENST00000393120 FHOD3Q2V2M9 1422 aa21.4■■□□□ 1.02
MKS1-203ENST00000393120 PCF11O94913 1555 aaKnown RBP21.38■■□□□ 1.01
MKS1-203ENST00000393120 FMN1Q68DA7 1419 aa21.38■■□□□ 1.01
MKS1-203ENST00000393120 P3H3Q8IVL6 736 aa21.37■■□□□ 1.01
MKS1-203ENST00000393120 CFAP43Q8NDM7 1665 aa21.37■■□□□ 1.01
MKS1-203ENST00000393120 WDR62O43379 1518 aa21.36■■□□□ 1.01
MKS1-203ENST00000393120 SAMD9Q5K651 1589 aa21.36■■□□□ 1.01
MKS1-203ENST00000393120 CLSPNQ9HAW4 1339 aa21.34■■□□□ 1.01
MKS1-203ENST00000393120 IFT140Q96RY7 1462 aa21.34■■□□□ 1.01
MKS1-203ENST00000393120 GRIN2BQ13224 1484 aa21.32■■□□□ 1
MKS1-203ENST00000393120 PBRM1Q86U86 1689 aa21.31■■□□□ 1
MKS1-203ENST00000393120 SNAPC4Q5SXM2 1469 aa21.29■■□□□ 1
MKS1-203ENST00000393120 ADAMTS12P58397 1594 aa21.28■■□□□ 1
MKS1-203ENST00000393120 PHLDB1Q86UU1 1377 aa21.26■□□□□ 0.99
MKS1-203ENST00000393120 DHX57Q6P158 1386 aaKnown RBP21.24■□□□□ 0.99
MKS1-203ENST00000393120 THOC2Q8NI27 1593 aaKnown RBP21.22■□□□□ 0.99
MKS1-203ENST00000393120 ATP1B4Q9UN42 357 aaPredicted RBP21.21■□□□□ 0.99
MKS1-203ENST00000393120 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.21■□□□□ 0.99
MKS1-203ENST00000393120 ZNF608Q9ULD9 1512 aaPredicted RBP21.19■□□□□ 0.98
MKS1-203ENST00000393120 IQGAP2Q13576 1575 aa21.18■□□□□ 0.98
MKS1-203ENST00000393120 ERCC6Q03468 1493 aa21.17■□□□□ 0.98
MKS1-203ENST00000393120 ZNF316A6NFI3 1004 aaPredicted RBP21.14■□□□□ 0.98
MKS1-203ENST00000393120 UGGT2Q9NYU1 1516 aa21.13■□□□□ 0.97
MKS1-203ENST00000393120 SETD5Q9C0A6 1442 aa21.1■□□□□ 0.97
MKS1-203ENST00000393120 MTUS2Q5JR59 1369 aa21.1■□□□□ 0.97
MKS1-203ENST00000393120 KIAA0586Q9BVV6 1533 aa21.1■□□□□ 0.97
MKS1-203ENST00000393120 ITGAEP38570 1179 aa21.1■□□□□ 0.97
MKS1-203ENST00000393120 DIEXFQ68CQ4 756 aaKnown RBP21.1■□□□□ 0.97
MKS1-203ENST00000393120 RAB3GAP2Q9H2M9 1393 aa21.09■□□□□ 0.97
MKS1-203ENST00000393120 CCDC18Q5T9S5 1454 aa21.09■□□□□ 0.97
MKS1-203ENST00000393120 EIF4G3O43432 1585 aaKnown RBP21.08■□□□□ 0.97
MKS1-203ENST00000393120 FAM50AQ14320 339 aaKnown RBP21.08■□□□□ 0.96
MKS1-203ENST00000393120 LRRIQ1Q96JM4 1722 aa21.07■□□□□ 0.96
MKS1-203ENST00000393120 MAGI1Q96QZ7 1491 aaPredicted RBP21.06■□□□□ 0.96
MKS1-203ENST00000393120 FGD6Q6ZV73 1430 aa21.06■□□□□ 0.96
MKS1-203ENST00000393120 GRIN2AQ12879 1464 aa21.05■□□□□ 0.96
MKS1-203ENST00000393120 EHBP1L1Q8N3D4 1523 aa21.05■□□□□ 0.96
MKS1-203ENST00000393120 HECW1Q76N89 1606 aa21.04■□□□□ 0.96
MKS1-203ENST00000393120 NCOA2Q15596 1464 aa21.02■□□□□ 0.96
MKS1-203ENST00000393120 ARHGEF11O15085 1522 aa21■□□□□ 0.95
MKS1-203ENST00000393120 MYOM3Q5VTT5 1437 aa21■□□□□ 0.95
MKS1-203ENST00000393120 SUPT6HQ7KZ85 1726 aaKnown RBP20.99■□□□□ 0.95
MKS1-203ENST00000393120 SYNJ2O15056 1496 aa20.98■□□□□ 0.95
MKS1-203ENST00000393120 EPRSP07814 1512 aaKnown RBP20.98■□□□□ 0.95
MKS1-203ENST00000393120 DISP1Q96F81 1524 aa20.98■□□□□ 0.95
MKS1-203ENST00000393120 KIAA0556O60303 1618 aa20.95■□□□□ 0.94
MKS1-203ENST00000393120 MAGI3Q5TCQ9 1506 aa20.95■□□□□ 0.94
MKS1-203ENST00000393120 MAPKBP1O60336 1514 aa20.94■□□□□ 0.94
MKS1-203ENST00000393120 CHMP7Q8WUX9 453 aaPredicted RBP20.92■□□□□ 0.94
MKS1-203ENST00000393120 NUP160Q12769 1436 aa20.89■□□□□ 0.93
MKS1-203ENST00000393120 TCOF1Q13428 1488 aaKnown RBP20.89■□□□□ 0.93
MKS1-203ENST00000393120 HFM1A2PYH4 1435 aa20.88■□□□□ 0.93
MKS1-203ENST00000393120 CEP170Q5SW79 1584 aa20.88■□□□□ 0.93
MKS1-203ENST00000393120 PTPRKQ15262 1439 aa20.87■□□□□ 0.93
MKS1-203ENST00000393120 MIA2Q96PC5 1412 aa20.86■□□□□ 0.93
MKS1-203ENST00000393120 PTPN23Q9H3S7 1636 aa20.85■□□□□ 0.93
MKS1-203ENST00000393120 CDK13Q14004 1512 aaKnown RBP20.85■□□□□ 0.93
MKS1-203ENST00000393120 TIMELESSQ9UNS1 1208 aa20.84■□□□□ 0.93
MKS1-203ENST00000393120 NUP153P49790 1475 aaKnown RBP20.83■□□□□ 0.92
MKS1-203ENST00000393120 RAPGEF6Q8TEU7 1601 aa20.82■□□□□ 0.92
MKS1-203ENST00000393120 CARMIL2Q6F5E8 1435 aa20.8■□□□□ 0.92
MKS1-203ENST00000393120 NAIPQ13075 1403 aa20.8■□□□□ 0.92
MKS1-203ENST00000393120 JPH4Q96JJ6 628 aa20.78■□□□□ 0.92
MKS1-203ENST00000393120 CDK11AQ9UQ88 783 aaPredicted RBP20.78■□□□□ 0.92
MKS1-203ENST00000393120 AKNAQ7Z591 1439 aa20.77■□□□□ 0.92
MKS1-203ENST00000393120 UACAQ9BZF9 1416 aa20.77■□□□□ 0.92
MKS1-203ENST00000393120 FBLN2P98095 1184 aa20.76■□□□□ 0.91
MKS1-203ENST00000393120 TROQ12816 1431 aaPredicted RBP20.69■□□□□ 0.9
MKS1-203ENST00000393120 SIN3AQ96ST3 1273 aa20.69■□□□□ 0.9
MKS1-203ENST00000393120 PLB1Q6P1J6 1458 aa20.69■□□□□ 0.9
MKS1-203ENST00000393120 ARID3CA6NKF2 412 aa20.68■□□□□ 0.9
MKS1-203ENST00000393120 ACIN1Q9UKV3 1341 aaKnown RBP20.68■□□□□ 0.9
MKS1-203ENST00000393120 MIER1Q8N108 512 aa20.67■□□□□ 0.9
MKS1-203ENST00000393120 GCC2Q8IWJ2 1684 aa20.66■□□□□ 0.9
MKS1-203ENST00000393120 ROCK1Q13464 1354 aa20.65■□□□□ 0.9
MKS1-203ENST00000393120 NEUROD1Q13562 356 aa20.64■□□□□ 0.89
MKS1-203ENST00000393120 ABCA8O94911 1581 aa20.64■□□□□ 0.89
MKS1-203ENST00000393120 CENPBP07199 599 aaPredicted RBP20.63■□□□□ 0.89
MKS1-203ENST00000393120 PRG4Q92954 1404 aaPredicted RBP20.62■□□□□ 0.89
MKS1-203ENST00000393120 PPP1R15AO75807 674 aaPredicted RBP20.61■□□□□ 0.89
MKS1-203ENST00000393120 DAPK1P53355 1430 aa20.61■□□□□ 0.89
MKS1-203ENST00000393120 ADCY10Q96PN6 1610 aa20.61■□□□□ 0.89
MKS1-203ENST00000393120 RRP7BPQ9NSQ0 103 aa20.61■□□□□ 0.89
MKS1-203ENST00000393120 ABCC5O15440 1437 aa20.59■□□□□ 0.89
MKS1-203ENST00000393120 CHIC2Q9UKJ5 165 aa20.59■□□□□ 0.89
MKS1-203ENST00000393120 DNMT1P26358 1616 aaKnown RBP20.59■□□□□ 0.89
MKS1-203ENST00000393120 GPATCH8Q9UKJ3 1502 aaKnown RBP20.57■□□□□ 0.88
MKS1-203ENST00000393120 ITSN2Q9NZM3 1697 aa20.55■□□□□ 0.88
MKS1-203ENST00000393120 ATP10BO94823 1461 aa20.55■□□□□ 0.88
MKS1-203ENST00000393120 PLEKHD1A6NEE1 506 aa20.54■□□□□ 0.88
MKS1-203ENST00000393120 CFDP1Q9UEE9 299 aaPredicted RBP20.53■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms