RNA–Protein interactions for RNA: ENST00000390400.2

TRBV28-201, Transcript of T cell receptor beta variable 28, humanhuman

APPRIS P1 BASIC

Gene TRBV28, Length 364 nt, Biotype TR V gene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRBV28-201ENST00000390400 ATAD2BQ9ULI0 1458 aa12.88□□□□□ -0.35
TRBV28-201ENST00000390400 PEG3Q9GZU2 1588 aa12.88□□□□□ -0.35
TRBV28-201ENST00000390400 VSIG10Q8N0Z9 540 aa12.87□□□□□ -0.35
TRBV28-201ENST00000390400 WIZO95785 1651 aa12.86□□□□□ -0.35
TRBV28-201ENST00000390400 PAXIP1Q6ZW49 1069 aaPredicted RBP12.86□□□□□ -0.35
TRBV28-201ENST00000390400 PRKCSHP14314 528 aaPredicted RBP12.84□□□□□ -0.35
TRBV28-201ENST00000390400 SUPT5HO00267 1087 aaKnown RBP12.82□□□□□ -0.36
TRBV28-201ENST00000390400 CFAP44Q96MT7 982 aa12.82□□□□□ -0.36
TRBV28-201ENST00000390400 NCAPD3P42695 1498 aa12.82□□□□□ -0.36
TRBV28-201ENST00000390400 BAZ1BQ9UIG0 1483 aaKnown RBP12.8□□□□□ -0.36
TRBV28-201ENST00000390400 HMGXB3Q12766 1538 aa12.8□□□□□ -0.36
TRBV28-201ENST00000390400 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.79□□□□□ -0.36
TRBV28-201ENST00000390400 CIZ1Q9ULV3 898 aaPredicted RBP12.78□□□□□ -0.36
TRBV28-201ENST00000390400 TSHZ2Q9NRE2 1034 aa12.76□□□□□ -0.37
TRBV28-201ENST00000390400 TOP2AP11388 1531 aaKnown RBP12.76□□□□□ -0.37
TRBV28-201ENST00000390400 BCANQ96GW7 911 aa12.75□□□□□ -0.37
TRBV28-201ENST00000390400 CHGAP10645 457 aaKnown RBP12.71□□□□□ -0.37
TRBV28-201ENST00000390400 RNF25Q96BH1 459 aaPredicted RBP12.71□□□□□ -0.37
TRBV28-201ENST00000390400 TAOK2Q9UL54 1235 aa12.69□□□□□ -0.38
TRBV28-201ENST00000390400 CACNB1Q02641 598 aaPredicted RBP12.68□□□□□ -0.38
TRBV28-201ENST00000390400 SPRYD3Q8NCJ5 442 aa12.68□□□□□ -0.38
TRBV28-201ENST00000390400 NUBP1P53384 320 aa12.66□□□□□ -0.38
TRBV28-201ENST00000390400 ZBTB47Q9UFB7 747 aaPredicted RBP12.61□□□□□ -0.39
TRBV28-201ENST00000390400 CCDC88BA6NC98 1476 aa12.59□□□□□ -0.39
TRBV28-201ENST00000390400 PLEKHG5O94827 1062 aa12.58□□□□□ -0.4
TRBV28-201ENST00000390400 HS6ST3Q8IZP7 471 aa12.58□□□□□ -0.4
TRBV28-201ENST00000390400 NKX1-1Q15270 411 aaPredicted RBP12.57□□□□□ -0.4
TRBV28-201ENST00000390400 MNX1P50219 401 aaPredicted RBP12.56□□□□□ -0.4
TRBV28-201ENST00000390400 CREBZFQ9NS37 354 aa12.56□□□□□ -0.4
TRBV28-201ENST00000390400 TRIM41Q8WV44 630 aa12.53□□□□□ -0.4
TRBV28-201ENST00000390400 DNAJC5Q9H3Z4 198 aa12.53□□□□□ -0.4
TRBV28-201ENST00000390400 TPRNQ4KMQ1 711 aa12.52□□□□□ -0.41
TRBV28-201ENST00000390400 GSE1Q14687 1217 aa12.5□□□□□ -0.41
TRBV28-201ENST00000390400 DCAF8Q5TAQ9 597 aa12.5□□□□□ -0.41
TRBV28-201ENST00000390400 CADPSQ9ULU8 1353 aa12.47□□□□□ -0.41
TRBV28-201ENST00000390400 SPDYE1Q8NFV5 336 aaPredicted RBP12.47□□□□□ -0.41
TRBV28-201ENST00000390400 RASEFQ8IZ41 740 aa12.46□□□□□ -0.41
TRBV28-201ENST00000390400 AKT1S1Q96B36 256 aa12.46□□□□□ -0.41
TRBV28-201ENST00000390400 CLEC11AQ9Y240 323 aa12.46□□□□□ -0.41
TRBV28-201ENST00000390400 LAMC3Q9Y6N6 1575 aa12.45□□□□□ -0.42
TRBV28-201ENST00000390400 CFTRP13569 1480 aa12.45□□□□□ -0.42
TRBV28-201ENST00000390400 RIOK3O14730 519 aaKnown RBP12.44□□□□□ -0.42
TRBV28-201ENST00000390400 GTPBP6O43824 516 aaPredicted RBP12.44□□□□□ -0.42
TRBV28-201ENST00000390400 NESP48681 1621 aa12.44□□□□□ -0.42
TRBV28-201ENST00000390400 REM2Q8IYK8 340 aaPredicted RBP12.43□□□□□ -0.42
TRBV28-201ENST00000390400 PRDM2Q13029 1718 aa12.41□□□□□ -0.42
TRBV28-201ENST00000390400 PRR29P0C7W0 189 aa12.4□□□□□ -0.42
TRBV28-201ENST00000390400 PDS5BQ9NTI5 1447 aa12.37□□□□□ -0.43
TRBV28-201ENST00000390400 CHRM1P11229 460 aaPredicted RBP12.35□□□□□ -0.43
TRBV28-201ENST00000390400 STK25O00506 426 aa12.34□□□□□ -0.43
TRBV28-201ENST00000390400 FAM212AQ96EL1 285 aa12.34□□□□□ -0.43
TRBV28-201ENST00000390400 RBM42Q9BTD8 480 aaKnown RBP12.34□□□□□ -0.43
TRBV28-201ENST00000390400 FANCD2Q9BXW9 1451 aa12.34□□□□□ -0.43
TRBV28-201ENST00000390400 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.32□□□□□ -0.44
TRBV28-201ENST00000390400 VGFO15240 615 aaPredicted RBP12.32□□□□□ -0.44
TRBV28-201ENST00000390400 ZFP91Q96JP5 570 aaPredicted RBP12.32□□□□□ -0.44
TRBV28-201ENST00000390400 ERCC6Q03468 1493 aa12.32□□□□□ -0.44
TRBV28-201ENST00000390400 PITPNM1O00562 1244 aa12.31□□□□□ -0.44
TRBV28-201ENST00000390400 PYGBP11216 843 aa12.31□□□□□ -0.44
TRBV28-201ENST00000390400 CEP164Q9UPV0 1460 aa12.31□□□□□ -0.44
TRBV28-201ENST00000390400 KIF21AQ7Z4S6 1674 aa12.31□□□□□ -0.44
TRBV28-201ENST00000390400 SGIP1Q9BQI5 828 aa12.29□□□□□ -0.44
TRBV28-201ENST00000390400 BCL11BQ9C0K0 894 aaPredicted RBP12.28□□□□□ -0.44
TRBV28-201ENST00000390400 STK24Q9Y6E0 443 aa12.26□□□□□ -0.45
TRBV28-201ENST00000390400 MRC2Q9UBG0 1479 aa12.23□□□□□ -0.45
TRBV28-201ENST00000390400 CHADLQ6NUI6 762 aa12.22□□□□□ -0.45
TRBV28-201ENST00000390400 ABCC8Q09428 1581 aa12.22□□□□□ -0.45
TRBV28-201ENST00000390400 WRNQ14191 1432 aaPredicted RBP eCLIP12.2□□□□□ -0.46
TRBV28-201ENST00000390400 NBR1Q14596 966 aa12.2□□□□□ -0.46
TRBV28-201ENST00000390400 PELP1Q8IZL8 1130 aaKnown RBP12.2□□□□□ -0.46
TRBV28-201ENST00000390400 THOC2Q8NI27 1593 aaKnown RBP12.2□□□□□ -0.46
TRBV28-201ENST00000390400 URB2Q14146 1524 aaKnown RBP12.19□□□□□ -0.46
TRBV28-201ENST00000390400 DNMBPQ6XZF7 1577 aa12.18□□□□□ -0.46
TRBV28-201ENST00000390400 CUX1P39880 1505 aa12.18□□□□□ -0.46
TRBV28-201ENST00000390400 WDR62O43379 1518 aa12.17□□□□□ -0.46
TRBV28-201ENST00000390400 TOPBP1Q92547 1522 aa12.17□□□□□ -0.46
TRBV28-201ENST00000390400 SYNJ1O43426 1573 aa12.16□□□□□ -0.46
TRBV28-201ENST00000390400 CADPS2Q86UW7 1296 aa12.15□□□□□ -0.46
TRBV28-201ENST00000390400 TOP2BQ02880 1626 aa12.15□□□□□ -0.47
TRBV28-201ENST00000390400 TSPYL2Q9H2G4 693 aaPredicted RBP12.14□□□□□ -0.47
TRBV28-201ENST00000390400 BIVM-ERCC5R4GMW8 1640 aa12.14□□□□□ -0.47
TRBV28-201ENST00000390400 PCDHB8Q9UN66 801 aa12.1□□□□□ -0.47
TRBV28-201ENST00000390400 PCDHB13Q9Y5F0 798 aa12.1□□□□□ -0.47
TRBV28-201ENST00000390400 FGD5Q6ZNL6 1462 aa12.09□□□□□ -0.47
TRBV28-201ENST00000390400 CUX2O14529 1486 aa12.08□□□□□ -0.48
TRBV28-201ENST00000390400 POLA1P09884 1462 aaPredicted RBP12.08□□□□□ -0.48
TRBV28-201ENST00000390400 FARP1Q9Y4F1 1045 aaPredicted RBP12.07□□□□□ -0.48
TRBV28-201ENST00000390400 SOGA1O94964 1423 aa12.03□□□□□ -0.48
TRBV28-201ENST00000390400 IFT140Q96RY7 1462 aa12.03□□□□□ -0.48
TRBV28-201ENST00000390400 CCDC61Q9Y6R9 512 aa12.03□□□□□ -0.48
TRBV28-201ENST00000390400 RAD54L2Q9Y4B4 1467 aa12.02□□□□□ -0.48
TRBV28-201ENST00000390400 MFRPQ9BY79 579 aa12.01□□□□□ -0.49
TRBV28-201ENST00000390400 TARBP1Q13395 1621 aaKnown RBP12□□□□□ -0.49
TRBV28-201ENST00000390400 PDAP1Q13442 181 aaKnown RBP12□□□□□ -0.49
TRBV28-201ENST00000390400 ZNF467Q7Z7K2 595 aaPredicted RBP12□□□□□ -0.49
TRBV28-201ENST00000390400 ABCA10Q8WWZ4 1543 aa12□□□□□ -0.49
TRBV28-201ENST00000390400 HRCP23327 699 aa11.99□□□□□ -0.49
TRBV28-201ENST00000390400 KCNV2Q8TDN2 545 aa11.99□□□□□ -0.49
TRBV28-201ENST00000390400 WDR97A6NE52 1622 aa11.98□□□□□ -0.49
TRBV28-201ENST00000390400 PPP1R37O75864 691 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 107.7 ms