RNA–Protein interactions for RNA: ENST00000380833.8

CLCN4-202, Transcript of chloride voltage-gated channel 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLCN4, Length 6,750 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN4-202ENST00000380833 NPM1P06748 294 aaKnown RBP eCLIP14.38□□□□□ -0.11
CLCN4-202ENST00000380833 CSRNP3Q8WYN3 585 aa14.38□□□□□ -0.11
CLCN4-202ENST00000380833 PTMSP20962 102 aa14.37□□□□□ -0.11
CLCN4-202ENST00000380833 A0A0U1RQG5 324 aaPredicted RBP14.36□□□□□ -0.11
CLCN4-202ENST00000380833 FAM9BQ8IZU0 186 aa14.36□□□□□ -0.11
CLCN4-202ENST00000380833 PPM1GO15355 546 aaPredicted RBP14.36□□□□□ -0.11
CLCN4-202ENST00000380833 DDRGK1Q96HY6 314 aa14.36□□□□□ -0.11
CLCN4-202ENST00000380833 UPF2Q9HAU5 1272 aaKnown RBP14.35□□□□□ -0.11
CLCN4-202ENST00000380833 KDM2AQ9Y2K7 1162 aa14.35□□□□□ -0.11
CLCN4-202ENST00000380833 CHIC2Q9UKJ5 165 aa14.34□□□□□ -0.11
CLCN4-202ENST00000380833 CCDC136Q96JN2 1154 aa14.33□□□□□ -0.12
CLCN4-202ENST00000380833 TNNT3P45378 269 aaPredicted RBP14.32□□□□□ -0.12
CLCN4-202ENST00000380833 ARID4BQ4LE39 1312 aaPredicted RBP14.29□□□□□ -0.12
CLCN4-202ENST00000380833 LMOD2Q6P5Q4 547 aa14.29□□□□□ -0.12
CLCN4-202ENST00000380833 RSPH6AQ9H0K4 717 aa14.28□□□□□ -0.12
CLCN4-202ENST00000380833 NOP58Q9Y2X3 529 aaKnown RBP14.28□□□□□ -0.12
CLCN4-202ENST00000380833 DNTTIP2Q5QJE6 756 aaKnown RBP14.28□□□□□ -0.12
CLCN4-202ENST00000380833 NPHP1O15259 732 aa14.27□□□□□ -0.12
CLCN4-202ENST00000380833 HSP90AA2PQ14568 343 aaPredicted RBP14.27□□□□□ -0.13
CLCN4-202ENST00000380833 CALRP27797 417 aaKnown RBP14.26□□□□□ -0.13
CLCN4-202ENST00000380833 IRX6P78412 446 aaPredicted RBP14.23□□□□□ -0.13
CLCN4-202ENST00000380833 PPP1R15AO75807 674 aaPredicted RBP14.22□□□□□ -0.13
CLCN4-202ENST00000380833 HIRIP3Q9BW71 556 aaPredicted RBP14.22□□□□□ -0.13
CLCN4-202ENST00000380833 KCNH8Q96L42 1107 aa14.21□□□□□ -0.13
CLCN4-202ENST00000380833 APPP05067 770 aa14.2□□□□□ -0.14
CLCN4-202ENST00000380833 HNRNPUQ00839 825 aaKnown RBP eCLIP14.19□□□□□ -0.14
CLCN4-202ENST00000380833 PTMAP06454 111 aaKnown RBP14.19□□□□□ -0.14
CLCN4-202ENST00000380833 L1TD1Q5T7N2 865 aaKnown RBP14.18□□□□□ -0.14
CLCN4-202ENST00000380833 BECN1Q14457 450 aa14.17□□□□□ -0.14
CLCN4-202ENST00000380833 TMC1Q8TDI8 760 aa14.16□□□□□ -0.14
CLCN4-202ENST00000380833 PNNQ9H307 717 aaKnown RBP14.15□□□□□ -0.14
CLCN4-202ENST00000380833 DDX10Q13206 875 aaKnown RBP14.15□□□□□ -0.14
CLCN4-202ENST00000380833 WDR43Q15061 677 aaKnown RBP eCLIP14.14□□□□□ -0.15
CLCN4-202ENST00000380833 TRHP20396 242 aaPredicted RBP14.13□□□□□ -0.15
CLCN4-202ENST00000380833 CLSTN1O94985 981 aa14.12□□□□□ -0.15
CLCN4-202ENST00000380833 GOLGA6L22H0YM25 854 aa14.11□□□□□ -0.15
CLCN4-202ENST00000380833 LAS1LQ9Y4W2 734 aaKnown RBP14.11□□□□□ -0.15
CLCN4-202ENST00000380833 MSNP26038 577 aaKnown RBP14.11□□□□□ -0.15
CLCN4-202ENST00000380833 SOX12O15370 315 aa14.09□□□□□ -0.15
CLCN4-202ENST00000380833 CHAF1AQ13111 956 aaPredicted RBP14.08□□□□□ -0.16
CLCN4-202ENST00000380833 TONSLQ96HA7 1378 aa14.07□□□□□ -0.16
CLCN4-202ENST00000380833 MYH16Q9H6N6 1097 aa14.07□□□□□ -0.16
CLCN4-202ENST00000380833 RGL3Q3MIN7 710 aa14.06□□□□□ -0.16
CLCN4-202ENST00000380833 ISY1Q9ULR0 285 aaKnown RBP14.05□□□□□ -0.16
CLCN4-202ENST00000380833 PDE4CQ08493 712 aa14.04□□□□□ -0.16
CLCN4-202ENST00000380833 NEUROD2Q15784 382 aa14.03□□□□□ -0.16
CLCN4-202ENST00000380833 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.03□□□□□ -0.16
CLCN4-202ENST00000380833 NAP1L2Q9ULW6 460 aaPredicted RBP14.02□□□□□ -0.17
CLCN4-202ENST00000380833 MLECQ14165 292 aa14.02□□□□□ -0.17
CLCN4-202ENST00000380833 SUPT16HQ9Y5B9 1047 aaKnown RBP14.02□□□□□ -0.17
CLCN4-202ENST00000380833 RBM19Q9Y4C8 960 aaKnown RBP14.01□□□□□ -0.17
CLCN4-202ENST00000380833 ANO8Q9HCE9 1232 aaPredicted RBP14.01□□□□□ -0.17
CLCN4-202ENST00000380833 ARID3AQ99856 593 aa14□□□□□ -0.17
CLCN4-202ENST00000380833 CHMP7Q8WUX9 453 aaPredicted RBP13.99□□□□□ -0.17
CLCN4-202ENST00000380833 TIMELESSQ9UNS1 1208 aa13.97□□□□□ -0.17
CLCN4-202ENST00000380833 RRP7BPQ9NSQ0 103 aa13.96□□□□□ -0.17
CLCN4-202ENST00000380833 MRS2Q9HD23 443 aa13.95□□□□□ -0.18
CLCN4-202ENST00000380833 PLCB2Q00722 1185 aa13.94□□□□□ -0.18
CLCN4-202ENST00000380833 TSPY4P0CV99 314 aa13.93□□□□□ -0.18
CLCN4-202ENST00000380833 TSPY10P0CW01 314 aa13.93□□□□□ -0.18
CLCN4-202ENST00000380833 MIER1Q8N108 512 aa13.93□□□□□ -0.18
CLCN4-202ENST00000380833 GOLGA2Q08379 1002 aa13.92□□□□□ -0.18
CLCN4-202ENST00000380833 ZNF330Q9Y3S2 320 aaPredicted RBP13.91□□□□□ -0.18
CLCN4-202ENST00000380833 SETQ01105 290 aaPredicted RBP13.91□□□□□ -0.18
CLCN4-202ENST00000380833 RB1CC1Q8TDY2 1594 aa13.91□□□□□ -0.18
CLCN4-202ENST00000380833 ZRSR1Q15695 479 aaKnown RBP13.9□□□□□ -0.18
CLCN4-202ENST00000380833 UBE2Q2Q8WVN8 375 aa13.9□□□□□ -0.18
CLCN4-202ENST00000380833 ERCC6Q03468 1493 aa13.9□□□□□ -0.18
CLCN4-202ENST00000380833 OS9Q13438 667 aaPredicted RBP13.88□□□□□ -0.19
CLCN4-202ENST00000380833 PRM3Q9NNZ6 103 aa13.88□□□□□ -0.19
CLCN4-202ENST00000380833 TSHZ2Q9NRE2 1034 aa13.88□□□□□ -0.19
CLCN4-202ENST00000380833 SAFB2Q14151 953 aaKnown RBP eCLIP13.87□□□□□ -0.19
CLCN4-202ENST00000380833 CCDC9Q9Y3X0 531 aaKnown RBP13.86□□□□□ -0.19
CLCN4-202ENST00000380833 GOLGA6L6A8MZA4 724 aa13.85□□□□□ -0.19
CLCN4-202ENST00000380833 ZNF771Q7L3S4 317 aaPredicted RBP13.84□□□□□ -0.19
CLCN4-202ENST00000380833 FGD1P98174 961 aa13.84□□□□□ -0.19
CLCN4-202ENST00000380833 PPP4R2Q9NY27 417 aa13.83□□□□□ -0.2
CLCN4-202ENST00000380833 POGKQ9P215 609 aa13.83□□□□□ -0.2
CLCN4-202ENST00000380833 GOLGA6L3A6NEY3 463 aa13.82□□□□□ -0.2
CLCN4-202ENST00000380833 SCRIBQ14160 1630 aa13.81□□□□□ -0.2
CLCN4-202ENST00000380833 FTSJ3Q8IY81 847 aaKnown RBP13.81□□□□□ -0.2
CLCN4-202ENST00000380833 FRAT1Q92837 279 aaPredicted RBP13.81□□□□□ -0.2
CLCN4-202ENST00000380833 GOLGA6L1Q8N7Z2 621 aa13.81□□□□□ -0.2
CLCN4-202ENST00000380833 U2SURPO15042 1029 aaKnown RBP13.8□□□□□ -0.2
CLCN4-202ENST00000380833 NRDCO43847 1150 aa13.79□□□□□ -0.2
CLCN4-202ENST00000380833 AEBP2Q6ZN18 517 aaPredicted RBP13.79□□□□□ -0.2
CLCN4-202ENST00000380833 KCNJ4P48050 445 aa13.78□□□□□ -0.2
CLCN4-202ENST00000380833 KIAA2012Q0VF49 1180 aa13.77□□□□□ -0.21
CLCN4-202ENST00000380833 USP35Q9P2H5 1018 aa13.77□□□□□ -0.21
CLCN4-202ENST00000380833 APBB1O00213 710 aa13.77□□□□□ -0.21
CLCN4-202ENST00000380833 SPRYD3Q8NCJ5 442 aa13.77□□□□□ -0.21
CLCN4-202ENST00000380833 PAK3O75914 559 aaPredicted RBP13.76□□□□□ -0.21
CLCN4-202ENST00000380833 CC2D1BQ5T0F9 858 aaKnown RBP13.76□□□□□ -0.21
CLCN4-202ENST00000380833 FBXO3Q9UK99 471 aa13.75□□□□□ -0.21
CLCN4-202ENST00000380833 RGS3P49796 1198 aa13.75□□□□□ -0.21
CLCN4-202ENST00000380833 MTUS2Q5JR59 1369 aa13.75□□□□□ -0.21
CLCN4-202ENST00000380833 PATL2C9JE40 543 aaKnown RBP13.73□□□□□ -0.21
CLCN4-202ENST00000380833 CASC1Q6TDU7 716 aa13.73□□□□□ -0.21
CLCN4-202ENST00000380833 MAPK8IP3Q9UPT6 1336 aa13.73□□□□□ -0.21
CLCN4-202ENST00000380833 DCAF1Q9Y4B6 1507 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms