RNA–Protein interactions for RNA: ENST00000380756.7

DNMT3A-204, Transcript of DNA methyltransferase 3 alpha, humanhuman

TSL 1 (best)

Gene DNMT3A, Length 4,477 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT3A-204ENST00000380756 CCDC136Q96JN2 1154 aa17.25■□□□□ 0.35
DNMT3A-204ENST00000380756 WIZO95785 1651 aa17.25■□□□□ 0.35
DNMT3A-204ENST00000380756 KANK4Q5T7N3 995 aaPredicted RBP17.22■□□□□ 0.35
DNMT3A-204ENST00000380756 SALL2Q9Y467 1007 aaPredicted RBP17.22■□□□□ 0.35
DNMT3A-204ENST00000380756 CANXP27824 592 aaKnown RBP17.19■□□□□ 0.34
DNMT3A-204ENST00000380756 ANP32EQ9BTT0 268 aa17.17■□□□□ 0.34
DNMT3A-204ENST00000380756 CHMP7Q8WUX9 453 aaPredicted RBP17.17■□□□□ 0.34
DNMT3A-204ENST00000380756 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
DNMT3A-204ENST00000380756 TIMELESSQ9UNS1 1208 aa17.15■□□□□ 0.34
DNMT3A-204ENST00000380756 KDM2AQ9Y2K7 1162 aa17.14■□□□□ 0.33
DNMT3A-204ENST00000380756 TSPY4P0CV99 314 aa17.13■□□□□ 0.33
DNMT3A-204ENST00000380756 TSPY10P0CW01 314 aa17.13■□□□□ 0.33
DNMT3A-204ENST00000380756 FHAD1B1AJZ9 1412 aa17.12■□□□□ 0.33
DNMT3A-204ENST00000380756 ZBTB47Q9UFB7 747 aaPredicted RBP17.11■□□□□ 0.33
DNMT3A-204ENST00000380756 CARMIL1Q5VZK9 1371 aa17.11■□□□□ 0.33
DNMT3A-204ENST00000380756 NBR1Q14596 966 aa17.11■□□□□ 0.33
DNMT3A-204ENST00000380756 SETD5Q9C0A6 1442 aa17.09■□□□□ 0.33
DNMT3A-204ENST00000380756 CUX2O14529 1486 aa17.08■□□□□ 0.33
DNMT3A-204ENST00000380756 RUSC2Q8N2Y8 1516 aa17.08■□□□□ 0.32
DNMT3A-204ENST00000380756 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.06■□□□□ 0.326e-7■■□□□ 13.3
DNMT3A-204ENST00000380756 CCER2I3L3R5 266 aa17.06■□□□□ 0.32
DNMT3A-204ENST00000380756 RAB3GAP2Q9H2M9 1393 aa17.05■□□□□ 0.32
DNMT3A-204ENST00000380756 RAPGEF2Q9Y4G8 1499 aa17.03■□□□□ 0.32
DNMT3A-204ENST00000380756 PPP4R2Q9NY27 417 aa17.01■□□□□ 0.31
DNMT3A-204ENST00000380756 SENP3-EIF4A1A0A087X0R7 540 aa17■□□□□ 0.31
DNMT3A-204ENST00000380756 DHX57Q6P158 1386 aaKnown RBP16.98■□□□□ 0.31
DNMT3A-204ENST00000380756 CFDP1Q9UEE9 299 aaPredicted RBP16.98■□□□□ 0.31
DNMT3A-204ENST00000380756 WDR43Q15061 677 aaKnown RBP eCLIP16.97■□□□□ 0.31
DNMT3A-204ENST00000380756 GOLGA6L2Q8N9W4 650 aaPredicted RBP16.97■□□□□ 0.31
DNMT3A-204ENST00000380756 ESF1Q9H501 851 aaKnown RBP16.97■□□□□ 0.31
DNMT3A-204ENST00000380756 SMARCA2P51531 1590 aa16.97■□□□□ 0.31
DNMT3A-204ENST00000380756 NEFMP07197 916 aa16.96■□□□□ 0.31
DNMT3A-204ENST00000380756 PPP1R15AO75807 674 aaPredicted RBP16.95■□□□□ 0.3
DNMT3A-204ENST00000380756 BCL11AQ9H165 835 aa16.94■□□□□ 0.3
DNMT3A-204ENST00000380756 ARHGAP35Q9NRY4 1499 aa16.93■□□□□ 0.3
DNMT3A-204ENST00000380756 PLEKHD1A6NEE1 506 aa16.93■□□□□ 0.3
DNMT3A-204ENST00000380756 CHGAP10645 457 aaKnown RBP16.93■□□□□ 0.3
DNMT3A-204ENST00000380756 RBM19Q9Y4C8 960 aaKnown RBP16.93■□□□□ 0.3
DNMT3A-204ENST00000380756 SMARCA4P51532 1647 aa16.93■□□□□ 0.3
DNMT3A-204ENST00000380756 CARD11Q9BXL7 1154 aa16.92■□□□□ 0.3
DNMT3A-204ENST00000380756 TSHZ2Q9NRE2 1034 aa16.92■□□□□ 0.3
DNMT3A-204ENST00000380756 B4GALNT3Q6L9W6 998 aa16.92■□□□□ 0.3
DNMT3A-204ENST00000380756 RGL3Q3MIN7 710 aa16.92■□□□□ 0.3
DNMT3A-204ENST00000380756 UPF2Q9HAU5 1272 aaKnown RBP16.91■□□□□ 0.3
DNMT3A-204ENST00000380756 HSPA5P11021 654 aaKnown RBP16.9■□□□□ 0.3
DNMT3A-204ENST00000380756 PDS5BQ9NTI5 1447 aa16.87■□□□□ 0.29
DNMT3A-204ENST00000380756 TRHP20396 242 aaPredicted RBP16.87■□□□□ 0.29
DNMT3A-204ENST00000380756 ATAD2BQ9ULI0 1458 aa16.86■□□□□ 0.29
DNMT3A-204ENST00000380756 KCNH8Q96L42 1107 aa16.86■□□□□ 0.29
DNMT3A-204ENST00000380756 EIF5BO60841 1220 aaKnown RBP16.82■□□□□ 0.28
DNMT3A-204ENST00000380756 FMN1Q68DA7 1419 aa16.8■□□□□ 0.28
DNMT3A-204ENST00000380756 FOXD1Q16676 465 aa16.8■□□□□ 0.28
DNMT3A-204ENST00000380756 NOP58Q9Y2X3 529 aaKnown RBP16.79■□□□□ 0.28
DNMT3A-204ENST00000380756 ERICH6BQ5W0A0 696 aa16.78■□□□□ 0.28
DNMT3A-204ENST00000380756 DDRGK1Q96HY6 314 aa16.78■□□□□ 0.28
DNMT3A-204ENST00000380756 HSP90AA1P07900 732 aaKnown RBP16.78■□□□□ 0.28
DNMT3A-204ENST00000380756 MPHOSPH9Q99550 1183 aa16.77■□□□□ 0.28
DNMT3A-204ENST00000380756 KNSTRNQ9Y448 316 aa16.76■□□□□ 0.27
DNMT3A-204ENST00000380756 FHOD3Q2V2M9 1422 aa16.76■□□□□ 0.27
DNMT3A-204ENST00000380756 EIF4G1Q04637 1599 aaKnown RBP16.75■□□□□ 0.27
DNMT3A-204ENST00000380756 TDRD9Q8NDG6 1382 aaKnown RBP16.73■□□□□ 0.27
DNMT3A-204ENST00000380756 DCAF11Q8TEB1 546 aa16.73■□□□□ 0.27
DNMT3A-204ENST00000380756 CDCA8Q53HL2 280 aa16.73■□□□□ 0.27
DNMT3A-204ENST00000380756 L3MBTL2Q969R5 705 aa16.73■□□□□ 0.27
DNMT3A-204ENST00000380756 SLC24A1O60721 1099 aa16.72■□□□□ 0.27
DNMT3A-204ENST00000380756 CADPSQ9ULU8 1353 aa16.71■□□□□ 0.27
DNMT3A-204ENST00000380756 PKD2Q13563 968 aa16.7■□□□□ 0.26
DNMT3A-204ENST00000380756 PPM1GO15355 546 aaPredicted RBP16.7■□□□□ 0.26
DNMT3A-204ENST00000380756 PLPPR3Q6T4P5 718 aa16.7■□□□□ 0.26
DNMT3A-204ENST00000380756 CC2D1BQ5T0F9 858 aaKnown RBP16.69■□□□□ 0.26
DNMT3A-204ENST00000380756 KIF21BO75037 1637 aa16.68■□□□□ 0.26
DNMT3A-204ENST00000380756 STAG3Q9UJ98 1225 aa16.68■□□□□ 0.26
DNMT3A-204ENST00000380756 LAS1LQ9Y4W2 734 aaKnown RBP16.68■□□□□ 0.26
DNMT3A-204ENST00000380756 ARXQ96QS3 562 aa16.67■□□□□ 0.26
DNMT3A-204ENST00000380756 ANP32BQ92688 251 aaKnown RBP16.66■□□□□ 0.26
DNMT3A-204ENST00000380756 BECN1Q14457 450 aa16.65■□□□□ 0.26
DNMT3A-204ENST00000380756 RGS3P49796 1198 aa16.63■□□□□ 0.25
DNMT3A-204ENST00000380756 IGF1RP08069 1367 aa16.62■□□□□ 0.25
DNMT3A-204ENST00000380756 TMF1P82094 1093 aa16.62■□□□□ 0.25
DNMT3A-204ENST00000380756 DEKP35659 375 aaKnown RBP16.6■□□□□ 0.25
DNMT3A-204ENST00000380756 NEUROD2Q15784 382 aa16.59■□□□□ 0.25
DNMT3A-204ENST00000380756 NUDCQ9Y266 331 aa16.59■□□□□ 0.25
DNMT3A-204ENST00000380756 CFAP53Q96M91 514 aa16.58■□□□□ 0.25
DNMT3A-204ENST00000380756 PRKRIP1Q9H875 184 aaPredicted RBP16.57■□□□□ 0.24
DNMT3A-204ENST00000380756 RCAN3Q9UKA8 241 aa16.57■□□□□ 0.24
DNMT3A-204ENST00000380756 NUP155O75694 1391 aa16.57■□□□□ 0.24
DNMT3A-204ENST00000380756 CCDC18Q5T9S5 1454 aa16.56■□□□□ 0.24
DNMT3A-204ENST00000380756 PHLDB1Q86UU1 1377 aa16.56■□□□□ 0.24
DNMT3A-204ENST00000380756 RALBP1Q15311 655 aa16.56■□□□□ 0.24
DNMT3A-204ENST00000380756 KTN1Q86UP2 1357 aaKnown RBP16.55■□□□□ 0.24
DNMT3A-204ENST00000380756 ARAP1Q96P48 1450 aa16.54■□□□□ 0.24
DNMT3A-204ENST00000380756 OSCARQ8IYS5 282 aa16.54■□□□□ 0.24
DNMT3A-204ENST00000380756 FRAT1Q92837 279 aaPredicted RBP16.53■□□□□ 0.24
DNMT3A-204ENST00000380756 ANKRD30AQ9BXX3 1397 aa16.53■□□□□ 0.24
DNMT3A-204ENST00000380756 SYNJ1O43426 1573 aa16.53■□□□□ 0.24
DNMT3A-204ENST00000380756 SENP3Q9H4L4 574 aaPredicted RBP16.53■□□□□ 0.24
DNMT3A-204ENST00000380756 RRBP1Q9P2E9 1410 aaKnown RBP16.52■□□□□ 0.24
DNMT3A-204ENST00000380756 ARID4BQ4LE39 1312 aaPredicted RBP16.52■□□□□ 0.24
DNMT3A-204ENST00000380756 TCERG1O14776 1098 aaKnown RBP16.51■□□□□ 0.23
DNMT3A-204ENST00000380756 MYH16Q9H6N6 1097 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms