RNA–Protein interactions for RNA: ENST00000378726.1

SSU72-204, Transcript of SSU72 homolog, RNA polymerase II CTD phosphatase, humanhuman

TSL 2

Gene SSU72, Length 2,238 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72-204ENST00000378726 PBRM1Q86U86 1689 aa29.84■■■□□ 2.37
SSU72-204ENST00000378726 FHAD1B1AJZ9 1412 aa29.83■■■□□ 2.37
SSU72-204ENST00000378726 P3H3Q8IVL6 736 aa29.79■■■□□ 2.36
SSU72-204ENST00000378726 CTTNBP2Q8WZ74 1663 aa29.77■■■□□ 2.36
SSU72-204ENST00000378726 ADAMTS12P58397 1594 aa29.72■■■□□ 2.35
SSU72-204ENST00000378726 EIF4G3O43432 1585 aaKnown RBP29.7■■■□□ 2.34
SSU72-204ENST00000378726 EFCAB5A4FU69 1503 aa29.68■■■□□ 2.34
SSU72-204ENST00000378726 KANK4Q5T7N3 995 aaPredicted RBP29.65■■■□□ 2.34
SSU72-204ENST00000378726 SNAPC4Q5SXM2 1469 aa29.65■■■□□ 2.34
SSU72-204ENST00000378726 FHOD3Q2V2M9 1422 aa29.65■■■□□ 2.34
SSU72-204ENST00000378726 ZEB1P37275 1124 aaPredicted RBP29.62■■■□□ 2.33
SSU72-204ENST00000378726 MAGI1Q96QZ7 1491 aaPredicted RBP29.55■■■□□ 2.32
SSU72-204ENST00000378726 ATP1B4Q9UN42 357 aaPredicted RBP29.55■■■□□ 2.32
SSU72-204ENST00000378726 CHMP7Q8WUX9 453 aaPredicted RBP29.53■■■□□ 2.32
SSU72-204ENST00000378726 SAMD9Q5K651 1589 aa29.52■■■□□ 2.32
SSU72-204ENST00000378726 GRIN2AQ12879 1464 aa29.51■■■□□ 2.31
SSU72-204ENST00000378726 FMN1Q68DA7 1419 aa29.5■■■□□ 2.31
SSU72-204ENST00000378726 IQGAP2Q13576 1575 aa29.49■■■□□ 2.31
SSU72-204ENST00000378726 MAP3K1Q13233 1512 aa29.48■■■□□ 2.31
SSU72-204ENST00000378726 FBLN2P98095 1184 aa29.48■■■□□ 2.31
SSU72-204ENST00000378726 SYNJ2O15056 1496 aa29.46■■■□□ 2.31
SSU72-204ENST00000378726 CASKIN1Q8WXD9 1431 aa29.46■■■□□ 2.31
SSU72-204ENST00000378726 PCF11O94913 1555 aaKnown RBP29.46■■■□□ 2.31
SSU72-204ENST00000378726 TIAM1Q13009 1591 aa29.44■■■□□ 2.3
SSU72-204ENST00000378726 KIAA0586Q9BVV6 1533 aa29.44■■■□□ 2.3
SSU72-204ENST00000378726 FYCO1Q9BQS8 1478 aa29.42■■■□□ 2.3
SSU72-204ENST00000378726 HNRNPUL2Q1KMD3 747 aaKnown RBP29.37■■■□□ 2.29
SSU72-204ENST00000378726 LRRC9Q6ZRR7 1453 aa29.36■■■□□ 2.29
SSU72-204ENST00000378726 UGGT2Q9NYU1 1516 aa29.35■■■□□ 2.29
SSU72-204ENST00000378726 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP29.35■■■□□ 2.29
SSU72-204ENST00000378726 CEP170Q5SW79 1584 aa29.29■■■□□ 2.28
SSU72-204ENST00000378726 CFAP43Q8NDM7 1665 aa29.28■■■□□ 2.28
SSU72-204ENST00000378726 CCER1Q8TC90 406 aaPredicted RBP29.26■■■□□ 2.28
SSU72-204ENST00000378726 NUP160Q12769 1436 aa29.26■■■□□ 2.27
SSU72-204ENST00000378726 RRBP1Q9P2E9 1410 aaKnown RBP29.26■■■□□ 2.27
SSU72-204ENST00000378726 DISP1Q96F81 1524 aa29.23■■■□□ 2.27
SSU72-204ENST00000378726 JPH4Q96JJ6 628 aa29.21■■■□□ 2.27
SSU72-204ENST00000378726 CCNB3Q8WWL7 1395 aa29.2■■■□□ 2.27
SSU72-204ENST00000378726 KIAA0556O60303 1618 aa29.17■■■□□ 2.26
SSU72-204ENST00000378726 PHLDB1Q86UU1 1377 aa29.16■■■□□ 2.26
SSU72-204ENST00000378726 MTUS2Q5JR59 1369 aa29.14■■■□□ 2.26
SSU72-204ENST00000378726 LRRIQ1Q96JM4 1722 aa29.11■■■□□ 2.25
SSU72-204ENST00000378726 CARMIL2Q6F5E8 1435 aa29.09■■■□□ 2.25
SSU72-204ENST00000378726 HECW1Q76N89 1606 aa29.08■■■□□ 2.25
SSU72-204ENST00000378726 CCDC18Q5T9S5 1454 aa29.08■■■□□ 2.25
SSU72-204ENST00000378726 EPRSP07814 1512 aaKnown RBP29.05■■■□□ 2.24
SSU72-204ENST00000378726 ITGAEP38570 1179 aa29.04■■■□□ 2.24
SSU72-204ENST00000378726 ARID3CA6NKF2 412 aa29.03■■■□□ 2.24
SSU72-204ENST00000378726 FAM50AQ14320 339 aaKnown RBP29.01■■■□□ 2.23
SSU72-204ENST00000378726 CHD1O14646 1710 aa28.99■■■□□ 2.23
SSU72-204ENST00000378726 CDK13Q14004 1512 aaKnown RBP28.96■■■□□ 2.23
SSU72-204ENST00000378726 EHBP1L1Q8N3D4 1523 aa28.96■■■□□ 2.23
SSU72-204ENST00000378726 MAGI3Q5TCQ9 1506 aa28.95■■■□□ 2.22
SSU72-204ENST00000378726 NCOA2Q15596 1464 aa28.94■■■□□ 2.22
SSU72-204ENST00000378726 PELP1Q8IZL8 1130 aaKnown RBP28.94■■■□□ 2.22
SSU72-204ENST00000378726 RAPGEF6Q8TEU7 1601 aa28.93■■■□□ 2.22
SSU72-204ENST00000378726 NUP153P49790 1475 aaKnown RBP28.93■■■□□ 2.22
SSU72-204ENST00000378726 PRG4Q92954 1404 aaPredicted RBP28.92■■■□□ 2.22
SSU72-204ENST00000378726 PLB1Q6P1J6 1458 aa28.9■■■□□ 2.22
SSU72-204ENST00000378726 SUPT6HQ7KZ85 1726 aaKnown RBP28.9■■■□□ 2.22
SSU72-204ENST00000378726 FGD6Q6ZV73 1430 aa28.89■■■□□ 2.22
SSU72-204ENST00000378726 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP28.88■■■□□ 2.21
SSU72-204ENST00000378726 CDK11AQ9UQ88 783 aaPredicted RBP28.86■■■□□ 2.21
SSU72-204ENST00000378726 MYOM3Q5VTT5 1437 aa28.85■■■□□ 2.21
SSU72-204ENST00000378726 SCAF1Q9H7N4 1312 aaKnown RBP28.83■■■□□ 2.21
SSU72-204ENST00000378726 ARHGEF11O15085 1522 aa28.83■■■□□ 2.21
SSU72-204ENST00000378726 PTPRGP23470 1445 aa28.8■■■□□ 2.2
SSU72-204ENST00000378726 SHROOM2Q13796 1616 aa28.75■■■□□ 2.19
SSU72-204ENST00000378726 ABCA8O94911 1581 aa28.75■■■□□ 2.19
SSU72-204ENST00000378726 SETD5Q9C0A6 1442 aa28.72■■■□□ 2.19
SSU72-204ENST00000378726 DHX57Q6P158 1386 aaKnown RBP28.71■■■□□ 2.19
SSU72-204ENST00000378726 RAB3GAP2Q9H2M9 1393 aa28.7■■■□□ 2.19
SSU72-204ENST00000378726 TROQ12816 1431 aaPredicted RBP28.68■■■□□ 2.18
SSU72-204ENST00000378726 PTPN23Q9H3S7 1636 aa28.67■■■□□ 2.18
SSU72-204ENST00000378726 ATP10BO94823 1461 aa28.67■■■□□ 2.18
SSU72-204ENST00000378726 CLASP1Q7Z460 1538 aa28.66■■■□□ 2.18
SSU72-204ENST00000378726 PLEKHD1A6NEE1 506 aa28.66■■■□□ 2.18
SSU72-204ENST00000378726 MIA2Q96PC5 1412 aa28.66■■■□□ 2.18
SSU72-204ENST00000378726 ERCC6L2Q5T890 1561 aa28.64■■■□□ 2.17
SSU72-204ENST00000378726 CLSPNQ9HAW4 1339 aa28.63■■■□□ 2.17
SSU72-204ENST00000378726 PTPRKQ15262 1439 aa28.62■■■□□ 2.17
SSU72-204ENST00000378726 TCOF1Q13428 1488 aaKnown RBP28.62■■■□□ 2.17
SSU72-204ENST00000378726 UACAQ9BZF9 1416 aa28.6■■■□□ 2.17
SSU72-204ENST00000378726 CFDP1Q9UEE9 299 aaPredicted RBP28.5■■■□□ 2.15
SSU72-204ENST00000378726 CHIC2Q9UKJ5 165 aa28.5■■■□□ 2.15
SSU72-204ENST00000378726 ZNF644Q9H582 1327 aaPredicted RBP28.5■■■□□ 2.15
SSU72-204ENST00000378726 KIF14Q15058 1648 aa28.49■■■□□ 2.15
SSU72-204ENST00000378726 HFM1A2PYH4 1435 aa28.49■■■□□ 2.15
SSU72-204ENST00000378726 ADCY10Q96PN6 1610 aa28.48■■■□□ 2.15
SSU72-204ENST00000378726 GPATCH8Q9UKJ3 1502 aaKnown RBP28.48■■■□□ 2.15
SSU72-204ENST00000378726 DIEXFQ68CQ4 756 aaKnown RBP28.47■■■□□ 2.15
SSU72-204ENST00000378726 OSCARQ8IYS5 282 aa28.46■■■□□ 2.15
SSU72-204ENST00000378726 ABCC2Q92887 1545 aa28.44■■■□□ 2.14
SSU72-204ENST00000378726 ACIN1Q9UKV3 1341 aaKnown RBP28.44■■■□□ 2.14
SSU72-204ENST00000378726 NAIPQ13075 1403 aa28.44■■■□□ 2.14
SSU72-204ENST00000378726 RRP7BPQ9NSQ0 103 aa28.43■■■□□ 2.14
SSU72-204ENST00000378726 ZNF777Q9ULD5 760 aaPredicted RBP28.42■■■□□ 2.14
SSU72-204ENST00000378726 ABCC10Q5T3U5 1492 aa28.4■■■□□ 2.14
SSU72-204ENST00000378726 NEUROD1Q13562 356 aa28.39■■■□□ 2.14
SSU72-204ENST00000378726 ITSN2Q9NZM3 1697 aa28.37■■■□□ 2.13
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms