RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 HSP90AA1P07900 732 aaKnown RBP16.15■□□□□ 0.18
PCDHA9-201ENST00000378122 MLECQ14165 292 aa16.13■□□□□ 0.17
PCDHA9-201ENST00000378122 CCDC136Q96JN2 1154 aa16.13■□□□□ 0.17
PCDHA9-201ENST00000378122 UPF2Q9HAU5 1272 aaKnown RBP16.1■□□□□ 0.17
PCDHA9-201ENST00000378122 MYO15BQ96JP2 1530 aa16.1■□□□□ 0.17
PCDHA9-201ENST00000378122 ERCC6Q03468 1493 aa16.08■□□□□ 0.16
PCDHA9-201ENST00000378122 HIRIP3Q9BW71 556 aaPredicted RBP16.07■□□□□ 0.16
PCDHA9-201ENST00000378122 TPRNQ4KMQ1 711 aa16.06■□□□□ 0.16
PCDHA9-201ENST00000378122 CHIC2Q9UKJ5 165 aa16.04■□□□□ 0.16
PCDHA9-201ENST00000378122 SENP3-EIF4A1A0A087X0R7 540 aa16.04■□□□□ 0.16
PCDHA9-201ENST00000378122 TMC1Q8TDI8 760 aa16.04■□□□□ 0.16
PCDHA9-201ENST00000378122 MRS2Q9HD23 443 aa16.02■□□□□ 0.15
PCDHA9-201ENST00000378122 ANP32EQ9BTT0 268 aa16.01■□□□□ 0.15
PCDHA9-201ENST00000378122 AMER1Q5JTC6 1135 aaPredicted RBP15.98■□□□□ 0.15
PCDHA9-201ENST00000378122 CCDC180Q9P1Z9 1646 aa15.98■□□□□ 0.15
PCDHA9-201ENST00000378122 ZCCHC6Q5VYS8 1495 aaKnown RBP15.97■□□□□ 0.15
PCDHA9-201ENST00000378122 PHF23Q9BUL5 403 aaPredicted RBP15.96■□□□□ 0.15
PCDHA9-201ENST00000378122 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.96■□□□□ 0.15
PCDHA9-201ENST00000378122 WDR43Q15061 677 aaKnown RBP eCLIP15.96■□□□□ 0.15
PCDHA9-201ENST00000378122 KDM2AQ9Y2K7 1162 aa15.96■□□□□ 0.14
PCDHA9-201ENST00000378122 CCDC9Q9Y3X0 531 aaKnown RBP15.93■□□□□ 0.14
PCDHA9-201ENST00000378122 ZBTB4Q9P1Z0 1013 aaPredicted RBP15.92■□□□□ 0.14
PCDHA9-201ENST00000378122 DDRGK1Q96HY6 314 aa15.87■□□□□ 0.13
PCDHA9-201ENST00000378122 CLIP1P30622 1438 aa15.85■□□□□ 0.13
PCDHA9-201ENST00000378122 PPM1GO15355 546 aaPredicted RBP15.84■□□□□ 0.13
PCDHA9-201ENST00000378122 CDK11BP21127 795 aaKnown RBP15.83■□□□□ 0.13
PCDHA9-201ENST00000378122 TSPY4P0CV99 314 aa15.83■□□□□ 0.12
PCDHA9-201ENST00000378122 TSPY10P0CW01 314 aa15.83■□□□□ 0.12
PCDHA9-201ENST00000378122 EIF4G2P78344 907 aaKnown RBP eCLIP15.81■□□□□ 0.12
PCDHA9-201ENST00000378122 SUPT16HQ9Y5B9 1047 aaKnown RBP15.81■□□□□ 0.12
PCDHA9-201ENST00000378122 RTN4Q9NQC3 1192 aaKnown RBP15.81■□□□□ 0.12
PCDHA9-201ENST00000378122 MTUS2Q5JR59 1369 aa15.8■□□□□ 0.12
PCDHA9-201ENST00000378122 RRP7BPQ9NSQ0 103 aa15.8■□□□□ 0.12
PCDHA9-201ENST00000378122 CEP162Q5TB80 1403 aa15.79■□□□□ 0.12
PCDHA9-201ENST00000378122 SOX12O15370 315 aa15.79■□□□□ 0.12
PCDHA9-201ENST00000378122 BECN1Q14457 450 aa15.78■□□□□ 0.12
PCDHA9-201ENST00000378122 TRIM44Q96DX7 344 aaPredicted RBP15.77■□□□□ 0.12
PCDHA9-201ENST00000378122 GOLGA3Q08378 1498 aa15.75■□□□□ 0.11
PCDHA9-201ENST00000378122 MYH16Q9H6N6 1097 aa15.75■□□□□ 0.11
PCDHA9-201ENST00000378122 CLSTN1O94985 981 aa15.74■□□□□ 0.11
PCDHA9-201ENST00000378122 LAS1LQ9Y4W2 734 aaKnown RBP15.74■□□□□ 0.11
PCDHA9-201ENST00000378122 NOP58Q9Y2X3 529 aaKnown RBP15.71■□□□□ 0.11
PCDHA9-201ENST00000378122 RGL3Q3MIN7 710 aa15.71■□□□□ 0.1
PCDHA9-201ENST00000378122 KLHL34Q8N239 644 aa15.69■□□□□ 0.1
PCDHA9-201ENST00000378122 NCLP19338 710 aaKnown RBP15.69■□□□□ 0.1
PCDHA9-201ENST00000378122 ISY1Q9ULR0 285 aaKnown RBP15.69■□□□□ 0.1
PCDHA9-201ENST00000378122 MEX3CQ5U5Q3 659 aaKnown RBP15.68■□□□□ 0.1
PCDHA9-201ENST00000378122 ANO8Q9HCE9 1232 aaPredicted RBP15.68■□□□□ 0.1
PCDHA9-201ENST00000378122 NAP1L5Q96NT1 182 aaPredicted RBP15.68■□□□□ 0.1
PCDHA9-201ENST00000378122 PLEKHD1A6NEE1 506 aa15.67■□□□□ 0.1
PCDHA9-201ENST00000378122 PPP4R2Q9NY27 417 aa15.65■□□□□ 0.1
PCDHA9-201ENST00000378122 POGKQ9P215 609 aa15.64■□□□□ 0.09
PCDHA9-201ENST00000378122 GOLGA6L22H0YM25 854 aa15.63■□□□□ 0.09
PCDHA9-201ENST00000378122 SIN3AQ96ST3 1273 aa15.62■□□□□ 0.09
PCDHA9-201ENST00000378122 PAK3O75914 559 aaPredicted RBP15.61■□□□□ 0.09
PCDHA9-201ENST00000378122 ZNF330Q9Y3S2 320 aaPredicted RBP15.61■□□□□ 0.09
PCDHA9-201ENST00000378122 PTMAP06454 111 aaKnown RBP15.6■□□□□ 0.09
PCDHA9-201ENST00000378122 RSF1Q96T23 1441 aaPredicted RBP15.6■□□□□ 0.09
PCDHA9-201ENST00000378122 DEKP35659 375 aaKnown RBP15.6■□□□□ 0.09
PCDHA9-201ENST00000378122 ERICH6BQ5W0A0 696 aa15.6■□□□□ 0.09
PCDHA9-201ENST00000378122 TNNT2P45379 298 aaPredicted RBP15.59■□□□□ 0.09
PCDHA9-201ENST00000378122 MSH5O43196 834 aa15.59■□□□□ 0.09
PCDHA9-201ENST00000378122 DCAF8L1A6NGE4 600 aa15.59■□□□□ 0.09
PCDHA9-201ENST00000378122 B4GALNT3Q6L9W6 998 aa15.59■□□□□ 0.09
PCDHA9-201ENST00000378122 GOLGA2Q08379 1002 aa15.58■□□□□ 0.08
PCDHA9-201ENST00000378122 DNTTIP2Q5QJE6 756 aaKnown RBP15.57■□□□□ 0.08
PCDHA9-201ENST00000378122 EEA1Q15075 1411 aa15.57■□□□□ 0.08
PCDHA9-201ENST00000378122 RGS3P49796 1198 aa15.57■□□□□ 0.08
PCDHA9-201ENST00000378122 CSB-PGBD3P0DP91 1061 aa15.56■□□□□ 0.08
PCDHA9-201ENST00000378122 NAP1L2Q9ULW6 460 aaPredicted RBP15.56■□□□□ 0.08
PCDHA9-201ENST00000378122 SAFB2Q14151 953 aaKnown RBP eCLIP15.56■□□□□ 0.08
PCDHA9-201ENST00000378122 FTSJ3Q8IY81 847 aaKnown RBP15.56■□□□□ 0.08
PCDHA9-201ENST00000378122 CARD11Q9BXL7 1154 aa15.55■□□□□ 0.08
PCDHA9-201ENST00000378122 TNIKQ9UKE5 1360 aa15.55■□□□□ 0.08
PCDHA9-201ENST00000378122 KNSTRNQ9Y448 316 aa15.55■□□□□ 0.08
PCDHA9-201ENST00000378122 NEUROD2Q15784 382 aa15.53■□□□□ 0.08
PCDHA9-201ENST00000378122 CASC1Q6TDU7 716 aa15.53■□□□□ 0.08
PCDHA9-201ENST00000378122 RBM19Q9Y4C8 960 aaKnown RBP15.53■□□□□ 0.08
PCDHA9-201ENST00000378122 CC2D1BQ5T0F9 858 aaKnown RBP15.52■□□□□ 0.08
PCDHA9-201ENST00000378122 CEP164Q9UPV0 1460 aa15.52■□□□□ 0.07
PCDHA9-201ENST00000378122 GGT6Q6P531 493 aa15.52■□□□□ 0.07
PCDHA9-201ENST00000378122 CYB5RLQ6IPT4 315 aa15.51■□□□□ 0.07
PCDHA9-201ENST00000378122 CFAP53Q96M91 514 aa15.51■□□□□ 0.07
PCDHA9-201ENST00000378122 PRM3Q9NNZ6 103 aa15.51■□□□□ 0.07
PCDHA9-201ENST00000378122 WRNQ14191 1432 aaPredicted RBP eCLIP15.5■□□□□ 0.07
PCDHA9-201ENST00000378122 TMX4Q9H1E5 349 aaPredicted RBP15.5■□□□□ 0.07
PCDHA9-201ENST00000378122 FRAT1Q92837 279 aaPredicted RBP15.5■□□□□ 0.07
PCDHA9-201ENST00000378122 HSP90AB1P08238 724 aaKnown RBP15.47■□□□□ 0.07
PCDHA9-201ENST00000378122 PDE4CQ08493 712 aa15.46■□□□□ 0.07
PCDHA9-201ENST00000378122 STK26Q9P289 416 aa15.46■□□□□ 0.07
PCDHA9-201ENST00000378122 G3V3G9 751 aa15.45■□□□□ 0.06
PCDHA9-201ENST00000378122 DCAF8Q5TAQ9 597 aa15.45■□□□□ 0.06
PCDHA9-201ENST00000378122 CDCA8Q53HL2 280 aa15.44■□□□□ 0.06
PCDHA9-201ENST00000378122 SPRYD3Q8NCJ5 442 aa15.43■□□□□ 0.06
PCDHA9-201ENST00000378122 RB1CC1Q8TDY2 1594 aa15.43■□□□□ 0.06
PCDHA9-201ENST00000378122 PLCB2Q00722 1185 aa15.43■□□□□ 0.06
PCDHA9-201ENST00000378122 ZRSR1Q15695 479 aaKnown RBP15.42■□□□□ 0.06
PCDHA9-201ENST00000378122 MAPK8IP3Q9UPT6 1336 aa15.42■□□□□ 0.06
PCDHA9-201ENST00000378122 CFDP1Q9UEE9 299 aaPredicted RBP15.41■□□□□ 0.06
PCDHA9-201ENST00000378122 KIF27Q86VH2 1401 aa15.4■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms