RNA–Protein interactions for RNA: ENST00000377670.8

HIF3A-205, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HIF3A, Length 5,852 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-205ENST00000377670 ABCC8Q09428 1581 aa14.78□□□□□ -0.04
HIF3A-205ENST00000377670 MTUS2Q5JR59 1369 aa14.76□□□□□ -0.05
HIF3A-205ENST00000377670 EIF5BO60841 1220 aaKnown RBP14.76□□□□□ -0.05
HIF3A-205ENST00000377670 WIZO95785 1651 aa14.76□□□□□ -0.05
HIF3A-205ENST00000377670 CCDC88BA6NC98 1476 aa14.76□□□□□ -0.05
HIF3A-205ENST00000377670 PLEKHD1A6NEE1 506 aa14.76□□□□□ -0.05
HIF3A-205ENST00000377670 GOLGA3Q08378 1498 aa14.76□□□□□ -0.05
HIF3A-205ENST00000377670 RRP7BPQ9NSQ0 103 aa14.75□□□□□ -0.05
HIF3A-205ENST00000377670 ANP32AP39687 249 aaKnown RBP14.72□□□□□ -0.05
HIF3A-205ENST00000377670 DDX10Q13206 875 aaKnown RBP14.71□□□□□ -0.05
HIF3A-205ENST00000377670 KIF27Q86VH2 1401 aa14.7□□□□□ -0.06
HIF3A-205ENST00000377670 TONSLQ96HA7 1378 aa14.7□□□□□ -0.06
HIF3A-205ENST00000377670 KDM2AQ9Y2K7 1162 aa14.67□□□□□ -0.06
HIF3A-205ENST00000377670 LMOD2Q6P5Q4 547 aa14.66□□□□□ -0.06
HIF3A-205ENST00000377670 EEA1Q15075 1411 aa14.65□□□□□ -0.06
HIF3A-205ENST00000377670 TNIKQ9UKE5 1360 aa14.65□□□□□ -0.06
HIF3A-205ENST00000377670 MLECQ14165 292 aa14.64□□□□□ -0.07
HIF3A-205ENST00000377670 FKBP8Q14318 412 aa14.64□□□□□ -0.07
HIF3A-205ENST00000377670 CEP164Q9UPV0 1460 aa14.62□□□□□ -0.07
HIF3A-205ENST00000377670 CUX2O14529 1486 aa14.62□□□□□ -0.07
HIF3A-205ENST00000377670 ARXQ96QS3 562 aa14.59□□□□□ -0.07
HIF3A-205ENST00000377670 NPHP1O15259 732 aa14.58□□□□□ -0.08
HIF3A-205ENST00000377670 SALL2Q9Y467 1007 aaPredicted RBP14.58□□□□□ -0.08
HIF3A-205ENST00000377670 CARMIL1Q5VZK9 1371 aa14.56□□□□□ -0.08
HIF3A-205ENST00000377670 TDRD9Q8NDG6 1382 aaKnown RBP14.55□□□□□ -0.08
HIF3A-205ENST00000377670 FAM9BQ8IZU0 186 aa14.55□□□□□ -0.08
HIF3A-205ENST00000377670 SENP3-EIF4A1A0A087X0R7 540 aa14.54□□□□□ -0.08
HIF3A-205ENST00000377670 MIER1Q8N108 512 aa14.54□□□□□ -0.08
HIF3A-205ENST00000377670 NBR1Q14596 966 aa14.54□□□□□ -0.08
HIF3A-205ENST00000377670 EIF4G1Q04637 1599 aaKnown RBP14.53□□□□□ -0.08
HIF3A-205ENST00000377670 SIN3AQ96ST3 1273 aa14.52□□□□□ -0.08
HIF3A-205ENST00000377670 KANK4Q5T7N3 995 aaPredicted RBP14.52□□□□□ -0.08
HIF3A-205ENST00000377670 RGL3Q3MIN7 710 aa14.52□□□□□ -0.09
HIF3A-205ENST00000377670 HDGFP51858 240 aaKnown RBP14.51□□□□□ -0.09
HIF3A-205ENST00000377670 GLIPR1L2Q4G1C9 344 aa14.51□□□□□ -0.09
HIF3A-205ENST00000377670 RUSC2Q8N2Y8 1516 aa14.51□□□□□ -0.09
HIF3A-205ENST00000377670 CFDP1Q9UEE9 299 aaPredicted RBP14.51□□□□□ -0.09
HIF3A-205ENST00000377670 SMARCA2P51531 1590 aa14.49□□□□□ -0.09
HIF3A-205ENST00000377670 TOP2AP11388 1531 aaKnown RBP14.48□□□□□ -0.09
HIF3A-205ENST00000377670 HNRNPUQ00839 825 aaKnown RBP eCLIP14.48□□□□□ -0.09
HIF3A-205ENST00000377670 ATAD2BQ9ULI0 1458 aa14.47□□□□□ -0.09
HIF3A-205ENST00000377670 TMC1Q8TDI8 760 aa14.45□□□□□ -0.1
HIF3A-205ENST00000377670 POGKQ9P215 609 aa14.44□□□□□ -0.1
HIF3A-205ENST00000377670 SMARCA4P51532 1647 aa14.44□□□□□ -0.1
HIF3A-205ENST00000377670 ANP32BQ92688 251 aaKnown RBP14.43□□□□□ -0.1
HIF3A-205ENST00000377670 CADPSQ9ULU8 1353 aa14.38□□□□□ -0.11
HIF3A-205ENST00000377670 CCDC9Q9Y3X0 531 aaKnown RBP14.38□□□□□ -0.11
HIF3A-205ENST00000377670 WDR43Q15061 677 aaKnown RBP eCLIP14.38□□□□□ -0.11
HIF3A-205ENST00000377670 PDS5BQ9NTI5 1447 aa14.38□□□□□ -0.11
HIF3A-205ENST00000377670 CCNB3Q8WWL7 1395 aa14.36□□□□□ -0.11
HIF3A-205ENST00000377670 IRX6P78412 446 aaPredicted RBP14.36□□□□□ -0.11
HIF3A-205ENST00000377670 FOXD1Q16676 465 aa14.36□□□□□ -0.11
HIF3A-205ENST00000377670 MRS2Q9HD23 443 aa14.36□□□□□ -0.11
HIF3A-205ENST00000377670 RAPGEF2Q9Y4G8 1499 aa14.35□□□□□ -0.11
HIF3A-205ENST00000377670 PPM1GO15355 546 aaPredicted RBP14.35□□□□□ -0.11
HIF3A-205ENST00000377670 EIF4G2P78344 907 aaKnown RBP eCLIP14.35□□□□□ -0.11
HIF3A-205ENST00000377670 VPS8Q8N3P4 1428 aa14.34□□□□□ -0.11
HIF3A-205ENST00000377670 KANK1Q14678 1352 aa14.34□□□□□ -0.11
HIF3A-205ENST00000377670 HSP90AA1P07900 732 aaKnown RBP14.33□□□□□ -0.11
HIF3A-205ENST00000377670 CYB5RLQ6IPT4 315 aa14.33□□□□□ -0.12
HIF3A-205ENST00000377670 GGT6Q6P531 493 aa14.32□□□□□ -0.12
HIF3A-205ENST00000377670 CCDC136Q96JN2 1154 aa14.31□□□□□ -0.12
HIF3A-205ENST00000377670 FHAD1B1AJZ9 1412 aa14.3□□□□□ -0.12
HIF3A-205ENST00000377670 ANP32EQ9BTT0 268 aa14.3□□□□□ -0.12
HIF3A-205ENST00000377670 FHOD3Q2V2M9 1422 aa14.29□□□□□ -0.12
HIF3A-205ENST00000377670 UPF2Q9HAU5 1272 aaKnown RBP14.29□□□□□ -0.12
HIF3A-205ENST00000377670 OSCARQ8IYS5 282 aa14.28□□□□□ -0.12
HIF3A-205ENST00000377670 CARMIL2Q6F5E8 1435 aa14.27□□□□□ -0.12
HIF3A-205ENST00000377670 CFAP53Q96M91 514 aa14.26□□□□□ -0.13
HIF3A-205ENST00000377670 MYH16Q9H6N6 1097 aa14.26□□□□□ -0.13
HIF3A-205ENST00000377670 CARD11Q9BXL7 1154 aa14.25□□□□□ -0.13
HIF3A-205ENST00000377670 CDCA8Q53HL2 280 aa14.24□□□□□ -0.13
HIF3A-205ENST00000377670 PHF23Q9BUL5 403 aaPredicted RBP14.24□□□□□ -0.13
HIF3A-205ENST00000377670 FANCD2Q9BXW9 1451 aa14.24□□□□□ -0.13
HIF3A-205ENST00000377670 EID1Q9Y6B2 187 aa14.23□□□□□ -0.13
HIF3A-205ENST00000377670 CSB-PGBD3P0DP91 1061 aa14.22□□□□□ -0.13
HIF3A-205ENST00000377670 MEX3CQ5U5Q3 659 aaKnown RBP14.21□□□□□ -0.14
HIF3A-205ENST00000377670 DCAF8L1A6NGE4 600 aa14.2□□□□□ -0.14
HIF3A-205ENST00000377670 SOX12O15370 315 aa14.2□□□□□ -0.14
HIF3A-205ENST00000377670 TMX4Q9H1E5 349 aaPredicted RBP14.2□□□□□ -0.14
HIF3A-205ENST00000377670 DCAF11Q8TEB1 546 aa14.2□□□□□ -0.14
HIF3A-205ENST00000377670 PAK3O75914 559 aaPredicted RBP14.2□□□□□ -0.14
HIF3A-205ENST00000377670 DNAJC5BQ9UF47 199 aa14.2□□□□□ -0.14
HIF3A-205ENST00000377670 ARHGAP35Q9NRY4 1499 aa14.19□□□□□ -0.14
HIF3A-205ENST00000377670 RAD54L2Q9Y4B4 1467 aa14.19□□□□□ -0.14
HIF3A-205ENST00000377670 CDK11BP21127 795 aaKnown RBP14.19□□□□□ -0.14
HIF3A-205ENST00000377670 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.18□□□□□ -0.14
HIF3A-205ENST00000377670 GOLGA2Q08379 1002 aa14.17□□□□□ -0.14
HIF3A-205ENST00000377670 RAB3GAP2Q9H2M9 1393 aa14.17□□□□□ -0.14
HIF3A-205ENST00000377670 SETD5Q9C0A6 1442 aa14.16□□□□□ -0.14
HIF3A-205ENST00000377670 EFCAB2Q5VUJ9 269 aa14.16□□□□□ -0.14
HIF3A-205ENST00000377670 HNRNPMP52272 730 aaKnown RBP eCLIP14.15□□□□□ -0.14
HIF3A-205ENST00000377670 JPH4Q96JJ6 628 aa14.15□□□□□ -0.14
HIF3A-205ENST00000377670 TNNT2P45379 298 aaPredicted RBP14.15□□□□□ -0.14
HIF3A-205ENST00000377670 PKD2Q13563 968 aa14.15□□□□□ -0.14
HIF3A-205ENST00000377670 SRPK2P78362 688 aaKnown RBP14.13□□□□□ -0.15
HIF3A-205ENST00000377670 RTN4Q9NQC3 1192 aaKnown RBP14.13□□□□□ -0.15
HIF3A-205ENST00000377670 KNSTRNQ9Y448 316 aa14.13□□□□□ -0.15
HIF3A-205ENST00000377670 NUDCQ9Y266 331 aa14.13□□□□□ -0.15
HIF3A-205ENST00000377670 FGD5Q6ZNL6 1462 aa14.12□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms