RNA–Protein interactions for RNA: ENST00000375254.7

UBR4-204, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBR4, Length 15,906 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-204ENST00000375254 GOLGA6L6A8MZA4 724 aa8.68□□□□□ -1.02
UBR4-204ENST00000375254 TAF3Q5VWG9 929 aa8.67□□□□□ -1.02
UBR4-204ENST00000375254 MIER1Q8N108 512 aa8.65□□□□□ -1.02
UBR4-204ENST00000375254 HNRNPUQ00839 825 aaKnown RBP eCLIP8.65□□□□□ -1.03
UBR4-204ENST00000375254 CFAP44Q96MT7 982 aa8.63□□□□□ -1.03
UBR4-204ENST00000375254 SETQ01105 290 aaPredicted RBP8.62□□□□□ -1.03
UBR4-204ENST00000375254 KIAA2012Q0VF49 1180 aa8.62□□□□□ -1.03
UBR4-204ENST00000375254 HMGB1P09429 215 aaKnown RBP8.62□□□□□ -1.03
UBR4-204ENST00000375254 RTN4Q9NQC3 1192 aaKnown RBP8.61□□□□□ -1.03
UBR4-204ENST00000375254 SUPT16HQ9Y5B9 1047 aaKnown RBP8.61□□□□□ -1.03
UBR4-204ENST00000375254 GOLGA6L1Q8N7Z2 621 aa8.61□□□□□ -1.03
UBR4-204ENST00000375254 IPO9Q96P70 1041 aaKnown RBP8.59□□□□□ -1.03
UBR4-204ENST00000375254 FANCIQ9NVI1 1328 aa8.58□□□□□ -1.04
UBR4-204ENST00000375254 RRP9O43818 475 aaKnown RBP8.58□□□□□ -1.04
UBR4-204ENST00000375254 UBE2Q2Q8WVN8 375 aa8.58□□□□□ -1.04
UBR4-204ENST00000375254 ZRSR1Q15695 479 aaKnown RBP8.57□□□□□ -1.04
UBR4-204ENST00000375254 TMC1Q8TDI8 760 aa8.57□□□□□ -1.04
UBR4-204ENST00000375254 ITGAEP38570 1179 aa8.57□□□□□ -1.04
UBR4-204ENST00000375254 CSPP1Q1MSJ5 1256 aa8.56□□□□□ -1.04
UBR4-204ENST00000375254 TCERG1O14776 1098 aaKnown RBP8.56□□□□□ -1.04
UBR4-204ENST00000375254 NOM1Q5C9Z4 860 aaKnown RBP8.56□□□□□ -1.04
UBR4-204ENST00000375254 CHMP4BQ9H444 224 aaKnown RBP8.55□□□□□ -1.04
UBR4-204ENST00000375254 MYH16Q9H6N6 1097 aa8.55□□□□□ -1.04
UBR4-204ENST00000375254 CASC1Q6TDU7 716 aa8.55□□□□□ -1.04
UBR4-204ENST00000375254 TSHZ2Q9NRE2 1034 aa8.54□□□□□ -1.04
UBR4-204ENST00000375254 GPS2Q13227 327 aa8.54□□□□□ -1.04
UBR4-204ENST00000375254 GBP4Q96PP9 640 aa8.53□□□□□ -1.04
UBR4-204ENST00000375254 GSE1Q14687 1217 aa8.53□□□□□ -1.04
UBR4-204ENST00000375254 SKOR2Q2VWA4 1001 aaPredicted RBP8.53□□□□□ -1.04
UBR4-204ENST00000375254 TEX35Q5T0J7 233 aa8.53□□□□□ -1.04
UBR4-204ENST00000375254 TPM2P07951 284 aa8.52□□□□□ -1.05
UBR4-204ENST00000375254 DDX10Q13206 875 aaKnown RBP8.52□□□□□ -1.05
UBR4-204ENST00000375254 HTATSF1O43719 755 aaKnown RBP8.52□□□□□ -1.05
UBR4-204ENST00000375254 SYAP1Q96A49 352 aaPredicted RBP8.5□□□□□ -1.05
UBR4-204ENST00000375254 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.5□□□□□ -1.05
UBR4-204ENST00000375254 CCDC66A2RUB6 948 aa8.5□□□□□ -1.05
UBR4-204ENST00000375254 CCER2I3L3R5 266 aa8.5□□□□□ -1.05
UBR4-204ENST00000375254 ARXQ96QS3 562 aa8.49□□□□□ -1.05
UBR4-204ENST00000375254 TIMELESSQ9UNS1 1208 aa8.49□□□□□ -1.05
UBR4-204ENST00000375254 MS4A1P11836 297 aa8.49□□□□□ -1.05
UBR4-204ENST00000375254 TRIM52Q96A61 297 aa8.48□□□□□ -1.05
UBR4-204ENST00000375254 FAM43AQ8N2R8 423 aa8.48□□□□□ -1.05
UBR4-204ENST00000375254 PDE4CQ08493 712 aa8.48□□□□□ -1.05
UBR4-204ENST00000375254 TSPYL1Q9H0U9 437 aa8.47□□□□□ -1.05
UBR4-204ENST00000375254 PHF14O94880 888 aa8.47□□□□□ -1.05
UBR4-204ENST00000375254 CWC15Q9P013 229 aaKnown RBP8.46□□□□□ -1.05
UBR4-204ENST00000375254 PDZRN4Q6ZMN7 1036 aaPredicted RBP8.46□□□□□ -1.06
UBR4-204ENST00000375254 FAM9BQ8IZU0 186 aa8.45□□□□□ -1.06
UBR4-204ENST00000375254 MRS2Q9HD23 443 aa8.45□□□□□ -1.06
UBR4-204ENST00000375254 STK11IPQ8N1F8 1099 aa8.45□□□□□ -1.06
UBR4-204ENST00000375254 GOLGA6L4A6NEF3 574 aa8.45□□□□□ -1.06
UBR4-204ENST00000375254 SLC4A1APQ9BWU0 796 aaKnown RBP8.44□□□□□ -1.06
UBR4-204ENST00000375254 HSCBQ8IWL3 235 aa8.43□□□□□ -1.06
UBR4-204ENST00000375254 ISY1Q9ULR0 285 aaKnown RBP8.43□□□□□ -1.06
UBR4-204ENST00000375254 FAM50AQ14320 339 aaKnown RBP8.43□□□□□ -1.06
UBR4-204ENST00000375254 ZNF771Q7L3S4 317 aaPredicted RBP8.43□□□□□ -1.06
UBR4-204ENST00000375254 DCAF1Q9Y4B6 1507 aa8.42□□□□□ -1.06
UBR4-204ENST00000375254 DDX11L8A8MPP1 907 aa8.41□□□□□ -1.06
UBR4-204ENST00000375254 HMGN5P82970 282 aaKnown RBP8.4□□□□□ -1.06
UBR4-204ENST00000375254 HSP90AB1P08238 724 aaKnown RBP8.4□□□□□ -1.06
UBR4-204ENST00000375254 DRC7Q8IY82 874 aa8.4□□□□□ -1.07
UBR4-204ENST00000375254 DIAPH3Q9NSV4 1193 aa8.39□□□□□ -1.07
UBR4-204ENST00000375254 TAF7LQ5H9L4 462 aa8.39□□□□□ -1.07
UBR4-204ENST00000375254 ANO8Q9HCE9 1232 aaPredicted RBP8.39□□□□□ -1.07
UBR4-204ENST00000375254 CALD1Q05682 793 aaKnown RBP8.39□□□□□ -1.07
UBR4-204ENST00000375254 AMER1Q5JTC6 1135 aaPredicted RBP8.38□□□□□ -1.07
UBR4-204ENST00000375254 WDR43Q15061 677 aaKnown RBP eCLIP8.38□□□□□ -1.073e-6■■□□□ 13.2
UBR4-204ENST00000375254 FAM13BQ9NYF5 915 aa8.38□□□□□ -1.07
UBR4-204ENST00000375254 PDCL2Q8N4E4 241 aa8.37□□□□□ -1.07
UBR4-204ENST00000375254 TPM4P67936 248 aa8.37□□□□□ -1.07
UBR4-204ENST00000375254 PDCL3Q9H2J4 239 aa8.37□□□□□ -1.07
UBR4-204ENST00000375254 HOMEZQ8IX15 550 aa8.37□□□□□ -1.07
UBR4-204ENST00000375254 PLCB2Q00722 1185 aa8.36□□□□□ -1.07
UBR4-204ENST00000375254 USP8P40818 1118 aa8.36□□□□□ -1.07
UBR4-204ENST00000375254 TPM3P06753 285 aa8.36□□□□□ -1.07
UBR4-204ENST00000375254 MRE11P49959 708 aa8.36□□□□□ -1.07
UBR4-204ENST00000375254 DEF6Q9H4E7 631 aa8.35□□□□□ -1.07
UBR4-204ENST00000375254 EIF4G2P78344 907 aaKnown RBP eCLIP8.35□□□□□ -1.07
UBR4-204ENST00000375254 NEFHP12036 1026 aa8.35□□□□□ -1.07
UBR4-204ENST00000375254 RDXP35241 583 aaKnown RBP8.33□□□□□ -1.08
UBR4-204ENST00000375254 B4GALNT3Q6L9W6 998 aa8.33□□□□□ -1.08
UBR4-204ENST00000375254 DHX8Q14562 1220 aaKnown RBP8.33□□□□□ -1.08
UBR4-204ENST00000375254 ZMYND15Q9H091 742 aa8.33□□□□□ -1.08
UBR4-204ENST00000375254 MCCP23508 829 aa8.32□□□□□ -1.08
UBR4-204ENST00000375254 AXDND1Q5T1B0 1012 aaPredicted RBP8.32□□□□□ -1.08
UBR4-204ENST00000375254 PES1O00541 588 aaKnown RBP8.32□□□□□ -1.08
UBR4-204ENST00000375254 CCDC34Q96HJ3 373 aa8.32□□□□□ -1.08
UBR4-204ENST00000375254 CAVIN1Q6NZI2 390 aaKnown RBP8.31□□□□□ -1.08
UBR4-204ENST00000375254 HSP90B1P14625 803 aaKnown RBP8.31□□□□□ -1.08
UBR4-204ENST00000375254 CHMP4CQ96CF2 233 aa8.31□□□□□ -1.08
UBR4-204ENST00000375254 ARGLU1Q9NWB6 273 aaPredicted RBP8.31□□□□□ -1.08
UBR4-204ENST00000375254 CCDC70Q6NSX1 233 aa8.3□□□□□ -1.08
UBR4-204ENST00000375254 ACBD3Q9H3P7 528 aa8.3□□□□□ -1.08
UBR4-204ENST00000375254 HMMRO75330 724 aa8.3□□□□□ -1.08
UBR4-204ENST00000375254 RRP12Q5JTH9 1297 aaKnown RBP8.3□□□□□ -1.08
UBR4-204ENST00000375254 CLGNO14967 610 aa8.3□□□□□ -1.08
UBR4-204ENST00000375254 SSR1P43307 286 aaKnown RBP8.3□□□□□ -1.08
UBR4-204ENST00000375254 CDCA8Q53HL2 280 aa8.29□□□□□ -1.08
UBR4-204ENST00000375254 FAM107BQ9H098 131 aa8.29□□□□□ -1.08
UBR4-204ENST00000375254 TONSLQ96HA7 1378 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms