RNA–Protein interactions for RNA: ENST00000372146.4

GTF3C4-201, Transcript of general transcription factor IIIC subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C4, Length 9,043 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4-201ENST00000372146 TMC1Q8TDI8 760 aa20.1■□□□□ 0.81
GTF3C4-201ENST00000372146 CALRP27797 417 aaKnown RBP20.06■□□□□ 0.8
GTF3C4-201ENST00000372146 NRDCO43847 1150 aa20.03■□□□□ 0.8
GTF3C4-201ENST00000372146 CASC1Q6TDU7 716 aa20.03■□□□□ 0.8
GTF3C4-201ENST00000372146 WDR43Q15061 677 aaKnown RBP eCLIP20.03■□□□□ 0.8
GTF3C4-201ENST00000372146 TONSLQ96HA7 1378 aa20.02■□□□□ 0.8
GTF3C4-201ENST00000372146 ZBTB7CA1YPR0 619 aa20.02■□□□□ 0.8
GTF3C4-201ENST00000372146 L1TD1Q5T7N2 865 aaKnown RBP20■□□□□ 0.79
GTF3C4-201ENST00000372146 DRC7Q8IY82 874 aa19.98■□□□□ 0.79
GTF3C4-201ENST00000372146 MRS2Q9HD23 443 aa19.95■□□□□ 0.78
GTF3C4-201ENST00000372146 HSP90AB1P08238 724 aaKnown RBP19.92■□□□□ 0.78
GTF3C4-201ENST00000372146 MIER1Q8N108 512 aa19.9■□□□□ 0.78
GTF3C4-201ENST00000372146 NOC3LQ8WTT2 800 aaKnown RBP19.89■□□□□ 0.77
GTF3C4-201ENST00000372146 NCBP3Q53F19 620 aaKnown RBP19.89■□□□□ 0.77
GTF3C4-201ENST00000372146 TAOK2Q9UL54 1235 aa19.89■□□□□ 0.77
GTF3C4-201ENST00000372146 HSP90AA2PQ14568 343 aaPredicted RBP19.86■□□□□ 0.77
GTF3C4-201ENST00000372146 SETQ01105 290 aaPredicted RBP19.84■□□□□ 0.77
GTF3C4-201ENST00000372146 PNNQ9H307 717 aaKnown RBP19.83■□□□□ 0.77
GTF3C4-201ENST00000372146 GOLGA6L1Q8N7Z2 621 aa19.82■□□□□ 0.76
GTF3C4-201ENST00000372146 VSIG10Q8N0Z9 540 aa19.78■□□□□ 0.76
GTF3C4-201ENST00000372146 SUPT16HQ9Y5B9 1047 aaKnown RBP19.78■□□□□ 0.76
GTF3C4-201ENST00000372146 FTSJ3Q8IY81 847 aaKnown RBP19.77■□□□□ 0.76
GTF3C4-201ENST00000372146 KIAA2012Q0VF49 1180 aa19.77■□□□□ 0.76
GTF3C4-201ENST00000372146 SPRYD3Q8NCJ5 442 aa19.75■□□□□ 0.75
GTF3C4-201ENST00000372146 GOLGA6L4A6NEF3 574 aa19.75■□□□□ 0.75
GTF3C4-201ENST00000372146 HSCBQ8IWL3 235 aa19.74■□□□□ 0.75
GTF3C4-201ENST00000372146 RGS3P49796 1198 aa19.74■□□□□ 0.75
GTF3C4-201ENST00000372146 A0A0U1RQG5 324 aaPredicted RBP19.72■□□□□ 0.75
GTF3C4-201ENST00000372146 ABCC9O60706 1549 aa19.72■□□□□ 0.75
GTF3C4-201ENST00000372146 CLSTN1O94985 981 aa19.71■□□□□ 0.75
GTF3C4-201ENST00000372146 GZF1Q9H116 711 aaPredicted RBP19.7■□□□□ 0.74
GTF3C4-201ENST00000372146 PTMSP20962 102 aa19.69■□□□□ 0.74
GTF3C4-201ENST00000372146 CSRNP3Q8WYN3 585 aa19.68■□□□□ 0.74
GTF3C4-201ENST00000372146 NAP1L2Q9ULW6 460 aaPredicted RBP19.68■□□□□ 0.74
GTF3C4-201ENST00000372146 RSPH6AQ9H0K4 717 aa19.67■□□□□ 0.74
GTF3C4-201ENST00000372146 FGD1P98174 961 aa19.67■□□□□ 0.74
GTF3C4-201ENST00000372146 ZNF777Q9ULD5 760 aaPredicted RBP19.65■□□□□ 0.74
GTF3C4-201ENST00000372146 PABPN1Q86U42 306 aaKnown RBP eCLIP19.65■□□□□ 0.74
GTF3C4-201ENST00000372146 APPP05067 770 aa19.64■□□□□ 0.73
GTF3C4-201ENST00000372146 ARID3CA6NKF2 412 aa19.64■□□□□ 0.73
GTF3C4-201ENST00000372146 SENP3-EIF4A1A0A087X0R7 540 aa19.63■□□□□ 0.73
GTF3C4-201ENST00000372146 A0A0G2JS52 829 aa19.63■□□□□ 0.73
GTF3C4-201ENST00000372146 PPP4R2Q9NY27 417 aa19.63■□□□□ 0.73
GTF3C4-201ENST00000372146 HIRIP3Q9BW71 556 aaPredicted RBP19.62■□□□□ 0.73
GTF3C4-201ENST00000372146 CHGAP10645 457 aaKnown RBP19.62■□□□□ 0.73
GTF3C4-201ENST00000372146 STAG3Q9UJ98 1225 aa19.61■□□□□ 0.73
GTF3C4-201ENST00000372146 CCDC180Q9P1Z9 1646 aa19.6■□□□□ 0.73
GTF3C4-201ENST00000372146 ZNF771Q7L3S4 317 aaPredicted RBP19.59■□□□□ 0.73
GTF3C4-201ENST00000372146 RBM19Q9Y4C8 960 aaKnown RBP19.58■□□□□ 0.73
GTF3C4-201ENST00000372146 KCNJ4P48050 445 aa19.58■□□□□ 0.72
GTF3C4-201ENST00000372146 PATL2C9JE40 543 aaKnown RBP19.58■□□□□ 0.72
GTF3C4-201ENST00000372146 B4GALNT3Q6L9W6 998 aa19.57■□□□□ 0.72
GTF3C4-201ENST00000372146 DCAF1Q9Y4B6 1507 aa19.57■□□□□ 0.72
GTF3C4-201ENST00000372146 USP35Q9P2H5 1018 aa19.54■□□□□ 0.72
GTF3C4-201ENST00000372146 PRM3Q9NNZ6 103 aa19.53■□□□□ 0.72
GTF3C4-201ENST00000372146 GOLGA6L3A6NEY3 463 aa19.53■□□□□ 0.72
GTF3C4-201ENST00000372146 GBP4Q96PP9 640 aa19.53■□□□□ 0.72
GTF3C4-201ENST00000372146 TIMELESSQ9UNS1 1208 aa19.52■□□□□ 0.72
GTF3C4-201ENST00000372146 P3H3Q8IVL6 736 aa19.51■□□□□ 0.71
GTF3C4-201ENST00000372146 GNL2Q13823 731 aaKnown RBP19.49■□□□□ 0.71
GTF3C4-201ENST00000372146 KDM2AQ9Y2K7 1162 aa19.49■□□□□ 0.71
GTF3C4-201ENST00000372146 SYAP1Q96A49 352 aaPredicted RBP19.47■□□□□ 0.71
GTF3C4-201ENST00000372146 PDE4CQ08493 712 aa19.47■□□□□ 0.71
GTF3C4-201ENST00000372146 ESF1Q9H501 851 aaKnown RBP19.47■□□□□ 0.71
GTF3C4-201ENST00000372146 MCCP23508 829 aa19.46■□□□□ 0.71
GTF3C4-201ENST00000372146 FRAT1Q92837 279 aaPredicted RBP19.45■□□□□ 0.7
GTF3C4-201ENST00000372146 OS9Q13438 667 aaPredicted RBP19.45■□□□□ 0.7
GTF3C4-201ENST00000372146 PODXL2Q9NZ53 605 aa19.45■□□□□ 0.7
GTF3C4-201ENST00000372146 PLPPR3Q6T4P5 718 aa19.44■□□□□ 0.7
GTF3C4-201ENST00000372146 TAF7LQ5H9L4 462 aa19.43■□□□□ 0.7
GTF3C4-201ENST00000372146 FBLN2P98095 1184 aa19.43■□□□□ 0.7
GTF3C4-201ENST00000372146 SLKQ9H2G2 1235 aaPredicted RBP19.42■□□□□ 0.7
GTF3C4-201ENST00000372146 PKNOX2Q96KN3 472 aa19.42■□□□□ 0.7
GTF3C4-201ENST00000372146 TPM4P67936 248 aa19.41■□□□□ 0.7
GTF3C4-201ENST00000372146 EIF4G2P78344 907 aaKnown RBP eCLIP19.38■□□□□ 0.69
GTF3C4-201ENST00000372146 PLEKHG5O94827 1062 aa19.37■□□□□ 0.69
GTF3C4-201ENST00000372146 GRWD1Q9BQ67 446 aaKnown RBP eCLIP19.36■□□□□ 0.69
GTF3C4-201ENST00000372146 SCRIBQ14160 1630 aa19.36■□□□□ 0.69
GTF3C4-201ENST00000372146 C14orf37Q86TY3 774 aa19.34■□□□□ 0.69
GTF3C4-201ENST00000372146 NOM1Q5C9Z4 860 aaKnown RBP19.33■□□□□ 0.69
GTF3C4-201ENST00000372146 RRP12Q5JTH9 1297 aaKnown RBP19.33■□□□□ 0.69
GTF3C4-201ENST00000372146 TEX35Q5T0J7 233 aa19.33■□□□□ 0.68
GTF3C4-201ENST00000372146 CHMP4BQ9H444 224 aaKnown RBP19.33■□□□□ 0.68
GTF3C4-201ENST00000372146 NEUROD2Q15784 382 aa19.32■□□□□ 0.68
GTF3C4-201ENST00000372146 GOLGA2Q08379 1002 aa19.32■□□□□ 0.68
GTF3C4-201ENST00000372146 PHF14O94880 888 aa19.32■□□□□ 0.68
GTF3C4-201ENST00000372146 GPS2Q13227 327 aa19.32■□□□□ 0.68
GTF3C4-201ENST00000372146 HTATSF1O43719 755 aaKnown RBP19.31■□□□□ 0.68
GTF3C4-201ENST00000372146 CFAP53Q96M91 514 aa19.31■□□□□ 0.68
GTF3C4-201ENST00000372146 CCAR2Q8N163 923 aaKnown RBP19.3■□□□□ 0.68
GTF3C4-201ENST00000372146 FAM13BQ9NYF5 915 aa19.28■□□□□ 0.68
GTF3C4-201ENST00000372146 FBXO3Q9UK99 471 aa19.28■□□□□ 0.68
GTF3C4-201ENST00000372146 CHIC2Q9UKJ5 165 aa19.27■□□□□ 0.68
GTF3C4-201ENST00000372146 KNSTRNQ9Y448 316 aa19.27■□□□□ 0.68
GTF3C4-201ENST00000372146 CREBRFQ8IUR6 639 aa19.27■□□□□ 0.68
GTF3C4-201ENST00000372146 TPM3P06753 285 aa19.26■□□□□ 0.67
GTF3C4-201ENST00000372146 HSP90B1P14625 803 aaKnown RBP19.25■□□□□ 0.67
GTF3C4-201ENST00000372146 MS4A1P11836 297 aa19.25■□□□□ 0.67
GTF3C4-201ENST00000372146 IPO9Q96P70 1041 aaKnown RBP19.25■□□□□ 0.67
GTF3C4-201ENST00000372146 SENP3Q9H4L4 574 aaPredicted RBP19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms