RNA–Protein interactions for RNA: ENST00000369406.7

HMGCS2-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS2, Length 2,428 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2-201ENST00000369406 VPS8Q8N3P4 1428 aa22.27■■□□□ 1.16
HMGCS2-201ENST00000369406 PCGF6Q9BYE7 350 aa22.19■■□□□ 1.14
HMGCS2-201ENST00000369406 MAGI1Q96QZ7 1491 aaPredicted RBP22.19■■□□□ 1.14
HMGCS2-201ENST00000369406 GRIN2AQ12879 1464 aa22.17■■□□□ 1.14
HMGCS2-201ENST00000369406 SAMD9Q5K651 1589 aa22.14■■□□□ 1.13
HMGCS2-201ENST00000369406 TTBK1Q5TCY1 1321 aaPredicted RBP22.13■■□□□ 1.13
HMGCS2-201ENST00000369406 SYNJ2O15056 1496 aa22.13■■□□□ 1.13
HMGCS2-201ENST00000369406 P3H3Q8IVL6 736 aa22.13■■□□□ 1.13
HMGCS2-201ENST00000369406 FHOD3Q2V2M9 1422 aa22.12■■□□□ 1.13
HMGCS2-201ENST00000369406 IQGAP2Q13576 1575 aa22.12■■□□□ 1.13
HMGCS2-201ENST00000369406 CEP170Q5SW79 1584 aa22.12■■□□□ 1.13
HMGCS2-201ENST00000369406 EFCAB5A4FU69 1503 aa22.11■■□□□ 1.13
HMGCS2-201ENST00000369406 TRIM26Q12899 539 aaPredicted RBP22.09■■□□□ 1.13
HMGCS2-201ENST00000369406 CHD1O14646 1710 aa22.06■■□□□ 1.12
HMGCS2-201ENST00000369406 PCF11O94913 1555 aaKnown RBP22.05■■□□□ 1.12
HMGCS2-201ENST00000369406 FBLN2P98095 1184 aa22.03■■□□□ 1.12
HMGCS2-201ENST00000369406 CHMP7Q8WUX9 453 aaPredicted RBP22.03■■□□□ 1.12
HMGCS2-201ENST00000369406 KIAA0586Q9BVV6 1533 aa22.01■■□□□ 1.11
HMGCS2-201ENST00000369406 NUP160Q12769 1436 aa21.99■■□□□ 1.11
HMGCS2-201ENST00000369406 UGGT2Q9NYU1 1516 aa21.99■■□□□ 1.11
HMGCS2-201ENST00000369406 LRRIQ1Q96JM4 1722 aa21.98■■□□□ 1.11
HMGCS2-201ENST00000369406 KANK4Q5T7N3 995 aaPredicted RBP21.95■■□□□ 1.1
HMGCS2-201ENST00000369406 DISP1Q96F81 1524 aa21.94■■□□□ 1.1
HMGCS2-201ENST00000369406 KIAA0556O60303 1618 aa21.93■■□□□ 1.1
HMGCS2-201ENST00000369406 TIAM1Q13009 1591 aa21.92■■□□□ 1.1
HMGCS2-201ENST00000369406 CFAP43Q8NDM7 1665 aa21.91■■□□□ 1.1
HMGCS2-201ENST00000369406 CASKIN1Q8WXD9 1431 aa21.89■■□□□ 1.09
HMGCS2-201ENST00000369406 FYCO1Q9BQS8 1478 aa21.89■■□□□ 1.09
HMGCS2-201ENST00000369406 APLP2Q06481 763 aa21.88■■□□□ 1.09
HMGCS2-201ENST00000369406 FMN1Q68DA7 1419 aa21.87■■□□□ 1.09
HMGCS2-201ENST00000369406 MAP3K1Q13233 1512 aa21.83■■□□□ 1.09
HMGCS2-201ENST00000369406 ATP1B4Q9UN42 357 aaPredicted RBP21.81■■□□□ 1.08
HMGCS2-201ENST00000369406 LRRC9Q6ZRR7 1453 aa21.78■■□□□ 1.08
HMGCS2-201ENST00000369406 JPH4Q96JJ6 628 aa21.78■■□□□ 1.08
HMGCS2-201ENST00000369406 SHROOM2Q13796 1616 aa21.75■■□□□ 1.07
HMGCS2-201ENST00000369406 HECW1Q76N89 1606 aa21.73■■□□□ 1.07
HMGCS2-201ENST00000369406 ERCC6L2Q5T890 1561 aa21.72■■□□□ 1.07
HMGCS2-201ENST00000369406 CLASP1Q7Z460 1538 aa21.72■■□□□ 1.07
HMGCS2-201ENST00000369406 MAGI3Q5TCQ9 1506 aa21.71■■□□□ 1.07
HMGCS2-201ENST00000369406 RAPGEF6Q8TEU7 1601 aa21.7■■□□□ 1.06
HMGCS2-201ENST00000369406 CDK13Q14004 1512 aaKnown RBP21.7■■□□□ 1.06
HMGCS2-201ENST00000369406 PRG4Q92954 1404 aaPredicted RBP21.69■■□□□ 1.06
HMGCS2-201ENST00000369406 EPRSP07814 1512 aaKnown RBP21.67■■□□□ 1.06
HMGCS2-201ENST00000369406 PLB1Q6P1J6 1458 aa21.67■■□□□ 1.06
HMGCS2-201ENST00000369406 NUP153P49790 1475 aaKnown RBP21.66■■□□□ 1.06
HMGCS2-201ENST00000369406 CARMIL2Q6F5E8 1435 aa21.66■■□□□ 1.06
HMGCS2-201ENST00000369406 ARID3CA6NKF2 412 aa21.66■■□□□ 1.06
HMGCS2-201ENST00000369406 PHLDB1Q86UU1 1377 aa21.64■■□□□ 1.05
HMGCS2-201ENST00000369406 CCDC18Q5T9S5 1454 aa21.62■■□□□ 1.05
HMGCS2-201ENST00000369406 RRBP1Q9P2E9 1410 aaKnown RBP21.61■■□□□ 1.05
HMGCS2-201ENST00000369406 ABCA8O94911 1581 aa21.6■■□□□ 1.05
HMGCS2-201ENST00000369406 EHBP1L1Q8N3D4 1523 aa21.57■■□□□ 1.04
HMGCS2-201ENST00000369406 MTUS2Q5JR59 1369 aa21.55■■□□□ 1.04
HMGCS2-201ENST00000369406 SUPT6HQ7KZ85 1726 aaKnown RBP21.54■■□□□ 1.04
HMGCS2-201ENST00000369406 HNRNPUL2Q1KMD3 747 aaKnown RBP21.54■■□□□ 1.04
HMGCS2-201ENST00000369406 NCOA2Q15596 1464 aa21.52■■□□□ 1.04
HMGCS2-201ENST00000369406 CCNB3Q8WWL7 1395 aa21.51■■□□□ 1.03
HMGCS2-201ENST00000369406 ARHGEF11O15085 1522 aa21.51■■□□□ 1.03
HMGCS2-201ENST00000369406 PTPRGP23470 1445 aa21.5■■□□□ 1.03
HMGCS2-201ENST00000369406 HRCP23327 699 aa21.5■■□□□ 1.03
HMGCS2-201ENST00000369406 ATP10BO94823 1461 aa21.44■■□□□ 1.02
HMGCS2-201ENST00000369406 KIF14Q15058 1648 aa21.43■■□□□ 1.02
HMGCS2-201ENST00000369406 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.43■■□□□ 1.02
HMGCS2-201ENST00000369406 FGD6Q6ZV73 1430 aa21.42■■□□□ 1.02
HMGCS2-201ENST00000369406 MYOM3Q5VTT5 1437 aa21.4■■□□□ 1.02
HMGCS2-201ENST00000369406 UACAQ9BZF9 1416 aa21.4■■□□□ 1.02
HMGCS2-201ENST00000369406 ADCY10Q96PN6 1610 aa21.38■■□□□ 1.01
HMGCS2-201ENST00000369406 ITGAEP38570 1179 aa21.37■■□□□ 1.01
HMGCS2-201ENST00000369406 ABCC2Q92887 1545 aa21.37■■□□□ 1.01
HMGCS2-201ENST00000369406 OSCARQ8IYS5 282 aa21.37■■□□□ 1.01
HMGCS2-201ENST00000369406 TROQ12816 1431 aaPredicted RBP21.36■■□□□ 1.01
HMGCS2-201ENST00000369406 FAM50AQ14320 339 aaKnown RBP21.36■■□□□ 1.01
HMGCS2-201ENST00000369406 PTPN23Q9H3S7 1636 aa21.36■■□□□ 1.01
HMGCS2-201ENST00000369406 ZCCHC11Q5TAX3 1644 aaKnown RBP21.31■■□□□ 1
HMGCS2-201ENST00000369406 PTPRKQ15262 1439 aa21.29■■□□□ 1
HMGCS2-201ENST00000369406 CDC42BPAQ5VT25 1732 aa21.28■■□□□ 1
HMGCS2-201ENST00000369406 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP21.28■■□□□ 1
HMGCS2-201ENST00000369406 TCOF1Q13428 1488 aaKnown RBP21.27■■□□□ 1
HMGCS2-201ENST00000369406 CDK11AQ9UQ88 783 aaPredicted RBP21.27■■□□□ 1
HMGCS2-201ENST00000369406 UHRF1BP1LA0JNW5 1464 aa21.27■□□□□ 0.99
HMGCS2-201ENST00000369406 ABCC10Q5T3U5 1492 aa21.26■□□□□ 0.99
HMGCS2-201ENST00000369406 CCER1Q8TC90 406 aaPredicted RBP21.24■□□□□ 0.99
HMGCS2-201ENST00000369406 GPATCH8Q9UKJ3 1502 aaKnown RBP21.23■□□□□ 0.99
HMGCS2-201ENST00000369406 ITSN2Q9NZM3 1697 aa21.23■□□□□ 0.99
HMGCS2-201ENST00000369406 KDM5BQ9UGL1 1544 aa21.23■□□□□ 0.99
HMGCS2-201ENST00000369406 PLEKHD1A6NEE1 506 aa21.22■□□□□ 0.99
HMGCS2-201ENST00000369406 MIA2Q96PC5 1412 aa21.22■□□□□ 0.99
HMGCS2-201ENST00000369406 ZNF644Q9H582 1327 aaPredicted RBP21.21■□□□□ 0.99
HMGCS2-201ENST00000369406 TTC37Q6PGP7 1564 aa21.19■□□□□ 0.98
HMGCS2-201ENST00000369406 CDC42BPBQ9Y5S2 1711 aa21.17■□□□□ 0.98
HMGCS2-201ENST00000369406 RAB3GAP2Q9H2M9 1393 aa21.16■□□□□ 0.98
HMGCS2-201ENST00000369406 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.15■□□□□ 0.98
HMGCS2-201ENST00000369406 CAMSAP2Q08AD1 1489 aa21.14■□□□□ 0.98
HMGCS2-201ENST00000369406 DNMT1P26358 1616 aaKnown RBP21.13■□□□□ 0.97
HMGCS2-201ENST00000369406 SETD5Q9C0A6 1442 aa21.13■□□□□ 0.97
HMGCS2-201ENST00000369406 PREX2Q70Z35 1606 aa21.13■□□□□ 0.97
HMGCS2-201ENST00000369406 DHX57Q6P158 1386 aaKnown RBP21.11■□□□□ 0.97
HMGCS2-201ENST00000369406 CFDP1Q9UEE9 299 aaPredicted RBP21.09■□□□□ 0.97
HMGCS2-201ENST00000369406 ABCC5O15440 1437 aa21.08■□□□□ 0.97
HMGCS2-201ENST00000369406 RIMBP3CA6NJZ7 1639 aa21.08■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms