RNA–Protein interactions for RNA: ENST00000361311.4

CLSTN1-201, Transcript of calsyntenin 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLSTN1, Length 4,647 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-201ENST00000361311 VPS8Q8N3P4 1428 aa21.42■■□□□ 1.02
CLSTN1-201ENST00000361311 SLC4A1APQ9BWU0 796 aaKnown RBP21.41■■□□□ 1.02
CLSTN1-201ENST00000361311 KCNH8Q96L42 1107 aa21.41■■□□□ 1.02
CLSTN1-201ENST00000361311 CHIC2Q9UKJ5 165 aa21.4■■□□□ 1.02
CLSTN1-201ENST00000361311 CCNB3Q8WWL7 1395 aa21.39■■□□□ 1.02
CLSTN1-201ENST00000361311 NEFMP07197 916 aa21.37■■□□□ 1.01
CLSTN1-201ENST00000361311 LAS1LQ9Y4W2 734 aaKnown RBP21.37■■□□□ 1.01
CLSTN1-201ENST00000361311 CCDC88BA6NC98 1476 aa21.37■■□□□ 1.01
CLSTN1-201ENST00000361311 ARID3CA6NKF2 412 aa21.36■■□□□ 1.01
CLSTN1-201ENST00000361311 PPM1GO15355 546 aaPredicted RBP21.36■■□□□ 1.01
CLSTN1-201ENST00000361311 DDRGK1Q96HY6 314 aa21.34■■□□□ 1.01
CLSTN1-201ENST00000361311 TIMELESSQ9UNS1 1208 aa21.33■■□□□ 1.01
CLSTN1-201ENST00000361311 SENP3-EIF4A1A0A087X0R7 540 aa21.33■■□□□ 1
CLSTN1-201ENST00000361311 ERICH6BQ5W0A0 696 aa21.31■■□□□ 1
CLSTN1-201ENST00000361311 ABCC8Q09428 1581 aa21.3■■□□□ 1
CLSTN1-201ENST00000361311 ARXQ96QS3 562 aa21.29■■□□□ 1
CLSTN1-201ENST00000361311 MTUS2Q5JR59 1369 aa21.28■■□□□ 1
CLSTN1-201ENST00000361311 KANK4Q5T7N3 995 aaPredicted RBP21.28■■□□□ 1
CLSTN1-201ENST00000361311 UPF2Q9HAU5 1272 aaKnown RBP21.26■□□□□ 0.99
CLSTN1-201ENST00000361311 DHX57Q6P158 1386 aaKnown RBP21.25■□□□□ 0.99
CLSTN1-201ENST00000361311 MROH2BQ7Z745 1585 aa21.25■□□□□ 0.99
CLSTN1-201ENST00000361311 NACADO15069 1562 aa21.24■□□□□ 0.99
CLSTN1-201ENST00000361311 RRP7BPQ9NSQ0 103 aa21.24■□□□□ 0.99
CLSTN1-201ENST00000361311 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.2■□□□□ 0.98
CLSTN1-201ENST00000361311 FANCIQ9NVI1 1328 aa21.19■□□□□ 0.98
CLSTN1-201ENST00000361311 ZNF777Q9ULD5 760 aaPredicted RBP21.19■□□□□ 0.98
CLSTN1-201ENST00000361311 SETD5Q9C0A6 1442 aa21.19■□□□□ 0.98
CLSTN1-201ENST00000361311 RAB3GAP2Q9H2M9 1393 aa21.19■□□□□ 0.98
CLSTN1-201ENST00000361311 BAZ1AQ9NRL2 1556 aaPredicted RBP21.18■□□□□ 0.98
CLSTN1-201ENST00000361311 ANP32BQ92688 251 aaKnown RBP21.16■□□□□ 0.98
CLSTN1-201ENST00000361311 PPP1R15AO75807 674 aaPredicted RBP21.13■□□□□ 0.97
CLSTN1-201ENST00000361311 IPO9Q96P70 1041 aaKnown RBP21.1■□□□□ 0.97
CLSTN1-201ENST00000361311 HSP90AA1P07900 732 aaKnown RBP21.1■□□□□ 0.97
CLSTN1-201ENST00000361311 KIF27Q86VH2 1401 aa21.09■□□□□ 0.97
CLSTN1-201ENST00000361311 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.08■□□□□ 0.97
CLSTN1-201ENST00000361311 KDM2AQ9Y2K7 1162 aa21.08■□□□□ 0.97
CLSTN1-201ENST00000361311 HSPA5P11021 654 aaKnown RBP21.07■□□□□ 0.96
CLSTN1-201ENST00000361311 BECN1Q14457 450 aa21.06■□□□□ 0.96
CLSTN1-201ENST00000361311 WDR43Q15061 677 aaKnown RBP eCLIP21.05■□□□□ 0.96
CLSTN1-201ENST00000361311 RUSC2Q8N2Y8 1516 aa21.01■□□□□ 0.95
CLSTN1-201ENST00000361311 WIZO95785 1651 aa21■□□□□ 0.95
CLSTN1-201ENST00000361311 NAP1L5Q96NT1 182 aaPredicted RBP20.96■□□□□ 0.95
CLSTN1-201ENST00000361311 RGS3P49796 1198 aa20.96■□□□□ 0.95
CLSTN1-201ENST00000361311 TCERG1O14776 1098 aaKnown RBP20.94■□□□□ 0.94
CLSTN1-201ENST00000361311 TRIM44Q96DX7 344 aaPredicted RBP20.94■□□□□ 0.94
CLSTN1-201ENST00000361311 FHAD1B1AJZ9 1412 aa20.91■□□□□ 0.94
CLSTN1-201ENST00000361311 RAPGEF2Q9Y4G8 1499 aa20.9■□□□□ 0.94
CLSTN1-201ENST00000361311 NUDCQ9Y266 331 aa20.9■□□□□ 0.94
CLSTN1-201ENST00000361311 CARD11Q9BXL7 1154 aa20.89■□□□□ 0.93
CLSTN1-201ENST00000361311 BAZ1BQ9UIG0 1483 aaKnown RBP20.87■□□□□ 0.93
CLSTN1-201ENST00000361311 USP35Q9P2H5 1018 aa20.85■□□□□ 0.93
CLSTN1-201ENST00000361311 RCAN3Q9UKA8 241 aa20.82■□□□□ 0.92
CLSTN1-201ENST00000361311 TOP2AP11388 1531 aaKnown RBP20.81■□□□□ 0.92
CLSTN1-201ENST00000361311 ARHGAP35Q9NRY4 1499 aa20.81■□□□□ 0.92
CLSTN1-201ENST00000361311 TSPY4P0CV99 314 aa20.79■□□□□ 0.92
CLSTN1-201ENST00000361311 TSPY10P0CW01 314 aa20.79■□□□□ 0.92
CLSTN1-201ENST00000361311 ZBED9Q6R2W3 1325 aa20.78■□□□□ 0.92
CLSTN1-201ENST00000361311 CHMP7Q8WUX9 453 aaPredicted RBP20.78■□□□□ 0.92
CLSTN1-201ENST00000361311 L1TD1Q5T7N2 865 aaKnown RBP20.78■□□□□ 0.92
CLSTN1-201ENST00000361311 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.76■□□□□ 0.913e-7■□□□□ 9.3
CLSTN1-201ENST00000361311 PRKRIP1Q9H875 184 aaPredicted RBP20.76■□□□□ 0.91
CLSTN1-201ENST00000361311 CARMIL1Q5VZK9 1371 aa20.76■□□□□ 0.91
CLSTN1-201ENST00000361311 NPM1P06748 294 aaKnown RBP eCLIP20.74■□□□□ 0.91
CLSTN1-201ENST00000361311 MSH5O43196 834 aa20.74■□□□□ 0.91
CLSTN1-201ENST00000361311 FOXD1Q16676 465 aa20.74■□□□□ 0.91
CLSTN1-201ENST00000361311 PDE4AP27815 886 aa20.73■□□□□ 0.91
CLSTN1-201ENST00000361311 RGL3Q3MIN7 710 aa20.73■□□□□ 0.91
CLSTN1-201ENST00000361311 ANO8Q9HCE9 1232 aaPredicted RBP20.72■□□□□ 0.91
CLSTN1-201ENST00000361311 L3MBTL2Q969R5 705 aa20.71■□□□□ 0.91
CLSTN1-201ENST00000361311 CC2D1BQ5T0F9 858 aaKnown RBP20.71■□□□□ 0.91
CLSTN1-201ENST00000361311 GSE1Q14687 1217 aa20.7■□□□□ 0.9
CLSTN1-201ENST00000361311 GOLGA6L22H0YM25 854 aa20.7■□□□□ 0.9
CLSTN1-201ENST00000361311 KNSTRNQ9Y448 316 aa20.69■□□□□ 0.9
CLSTN1-201ENST00000361311 CUX2O14529 1486 aa20.68■□□□□ 0.9
CLSTN1-201ENST00000361311 MPHOSPH9Q99550 1183 aa20.67■□□□□ 0.9
CLSTN1-201ENST00000361311 PRKCSHP14314 528 aaPredicted RBP20.66■□□□□ 0.9
CLSTN1-201ENST00000361311 PNNQ9H307 717 aaKnown RBP20.66■□□□□ 0.9
CLSTN1-201ENST00000361311 PAK3O75914 559 aaPredicted RBP20.66■□□□□ 0.9
CLSTN1-201ENST00000361311 FMN1Q68DA7 1419 aa20.65■□□□□ 0.9
CLSTN1-201ENST00000361311 SLKQ9H2G2 1235 aaPredicted RBP20.64■□□□□ 0.9
CLSTN1-201ENST00000361311 FRAT1Q92837 279 aaPredicted RBP20.62■□□□□ 0.89
CLSTN1-201ENST00000361311 RSPH6AQ9H0K4 717 aa20.62■□□□□ 0.89
CLSTN1-201ENST00000361311 CFDP1Q9UEE9 299 aaPredicted RBP20.62■□□□□ 0.89
CLSTN1-201ENST00000361311 EXOC6Q8TAG9 804 aa20.62■□□□□ 0.89
CLSTN1-201ENST00000361311 SLC4A3P48751 1232 aa20.62■□□□□ 0.89
CLSTN1-201ENST00000361311 NCLP19338 710 aaKnown RBP20.61■□□□□ 0.89
CLSTN1-201ENST00000361311 ERCC6Q03468 1493 aa20.6■□□□□ 0.89
CLSTN1-201ENST00000361311 RALBP1Q15311 655 aa20.6■□□□□ 0.89
CLSTN1-201ENST00000361311 IL27Q8NEV9 243 aa20.6■□□□□ 0.89
CLSTN1-201ENST00000361311 KIF21BO75037 1637 aa20.6■□□□□ 0.89
CLSTN1-201ENST00000361311 SPRYD3Q8NCJ5 442 aa20.58■□□□□ 0.89
CLSTN1-201ENST00000361311 NEUROD2Q15784 382 aa20.57■□□□□ 0.88
CLSTN1-201ENST00000361311 DCAF11Q8TEB1 546 aa20.57■□□□□ 0.88
CLSTN1-201ENST00000361311 PDE3BQ13370 1112 aa20.57■□□□□ 0.88
CLSTN1-201ENST00000361311 GZF1Q9H116 711 aaPredicted RBP20.57■□□□□ 0.88
CLSTN1-201ENST00000361311 ARID4BQ4LE39 1312 aaPredicted RBP20.57■□□□□ 0.88
CLSTN1-201ENST00000361311 RRP1P56182 461 aaKnown RBP20.57■□□□□ 0.88
CLSTN1-201ENST00000361311 KTN1Q86UP2 1357 aaKnown RBP20.56■□□□□ 0.88
CLSTN1-201ENST00000361311 MS4A1P11836 297 aa20.55■□□□□ 0.88
CLSTN1-201ENST00000361311 CHGAP10645 457 aaKnown RBP20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms