RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 CEP164Q9UPV0 1460 aa15.77■□□□□ 0.11
COL9A1-202ENST00000357250 FAM9BQ8IZU0 186 aa15.75■□□□□ 0.11
COL9A1-202ENST00000357250 STAG3Q9UJ98 1225 aa15.75■□□□□ 0.11
COL9A1-202ENST00000357250 CUX2O14529 1486 aa15.73■□□□□ 0.11
COL9A1-202ENST00000357250 KCNH8Q96L42 1107 aa15.72■□□□□ 0.11
COL9A1-202ENST00000357250 CHGAP10645 457 aaKnown RBP15.72■□□□□ 0.11
COL9A1-202ENST00000357250 EIF4G2P78344 907 aaKnown RBP eCLIP15.72■□□□□ 0.11
COL9A1-202ENST00000357250 CCDC136Q96JN2 1154 aa15.72■□□□□ 0.11
COL9A1-202ENST00000357250 NPM2Q86SE8 214 aaKnown RBP15.72■□□□□ 0.11
COL9A1-202ENST00000357250 WDR43Q15061 677 aaKnown RBP eCLIP15.71■□□□□ 0.1
COL9A1-202ENST00000357250 MRS2Q9HD23 443 aa15.71■□□□□ 0.1
COL9A1-202ENST00000357250 HSP90AA1P07900 732 aaKnown RBP15.7■□□□□ 0.1
COL9A1-202ENST00000357250 MIER1Q8N108 512 aa15.69■□□□□ 0.1
COL9A1-202ENST00000357250 KDM2AQ9Y2K7 1162 aa15.68■□□□□ 0.1
COL9A1-202ENST00000357250 SENP3Q9H4L4 574 aaPredicted RBP15.67■□□□□ 0.1
COL9A1-202ENST00000357250 CARMIL1Q5VZK9 1371 aa15.67■□□□□ 0.1
COL9A1-202ENST00000357250 KANK4Q5T7N3 995 aaPredicted RBP15.67■□□□□ 0.1
COL9A1-202ENST00000357250 PLPPR3Q6T4P5 718 aa15.67■□□□□ 0.1
COL9A1-202ENST00000357250 RUSC2Q8N2Y8 1516 aa15.65■□□□□ 0.1
COL9A1-202ENST00000357250 TDRD9Q8NDG6 1382 aaKnown RBP15.65■□□□□ 0.1
COL9A1-202ENST00000357250 SIN3AQ96ST3 1273 aa15.64■□□□□ 0.09
COL9A1-202ENST00000357250 BCL11AQ9H165 835 aa15.63■□□□□ 0.09
COL9A1-202ENST00000357250 TOP2AP11388 1531 aaKnown RBP15.63■□□□□ 0.09
COL9A1-202ENST00000357250 ATAD2BQ9ULI0 1458 aa15.62■□□□□ 0.09
COL9A1-202ENST00000357250 ERCC6Q03468 1493 aa15.61■□□□□ 0.09
COL9A1-202ENST00000357250 SMARCA2P51531 1590 aa15.6■□□□□ 0.09
COL9A1-202ENST00000357250 PLEKHD1A6NEE1 506 aa15.59■□□□□ 0.09
COL9A1-202ENST00000357250 CDCA8Q53HL2 280 aa15.59■□□□□ 0.09
COL9A1-202ENST00000357250 SALL2Q9Y467 1007 aaPredicted RBP15.59■□□□□ 0.09
COL9A1-202ENST00000357250 SENP3-EIF4A1A0A087X0R7 540 aa15.58■□□□□ 0.08
COL9A1-202ENST00000357250 SMARCA4P51532 1647 aa15.57■□□□□ 0.08
COL9A1-202ENST00000357250 CFDP1Q9UEE9 299 aaPredicted RBP15.56■□□□□ 0.08
COL9A1-202ENST00000357250 RGL3Q3MIN7 710 aa15.54■□□□□ 0.08
COL9A1-202ENST00000357250 EIF4G1Q04637 1599 aaKnown RBP15.54■□□□□ 0.08
COL9A1-202ENST00000357250 MYH16Q9H6N6 1097 aa15.53■□□□□ 0.08
COL9A1-202ENST00000357250 TIMELESSQ9UNS1 1208 aa15.53■□□□□ 0.08
COL9A1-202ENST00000357250 DDRGK1Q96HY6 314 aa15.52■□□□□ 0.07
COL9A1-202ENST00000357250 EIF5BO60841 1220 aaKnown RBP15.51■□□□□ 0.07
COL9A1-202ENST00000357250 ANP32EQ9BTT0 268 aa15.51■□□□□ 0.07
COL9A1-202ENST00000357250 VPS8Q8N3P4 1428 aa15.5■□□□□ 0.07
COL9A1-202ENST00000357250 FHAD1B1AJZ9 1412 aa15.5■□□□□ 0.07
COL9A1-202ENST00000357250 CADPSQ9ULU8 1353 aa15.5■□□□□ 0.07
COL9A1-202ENST00000357250 RAPGEF2Q9Y4G8 1499 aa15.5■□□□□ 0.07
COL9A1-202ENST00000357250 CCNB3Q8WWL7 1395 aa15.49■□□□□ 0.07
COL9A1-202ENST00000357250 BECN1Q14457 450 aa15.47■□□□□ 0.07
COL9A1-202ENST00000357250 CFAP53Q96M91 514 aa15.47■□□□□ 0.07
COL9A1-202ENST00000357250 SCAF1Q9H7N4 1312 aaKnown RBP15.47■□□□□ 0.07
COL9A1-202ENST00000357250 GLIPR1L2Q4G1C9 344 aa15.45■□□□□ 0.06
COL9A1-202ENST00000357250 FOXD1Q16676 465 aa15.42■□□□□ 0.06
COL9A1-202ENST00000357250 KNSTRNQ9Y448 316 aa15.42■□□□□ 0.06
COL9A1-202ENST00000357250 IRX6P78412 446 aaPredicted RBP15.41■□□□□ 0.06
COL9A1-202ENST00000357250 PDS5BQ9NTI5 1447 aa15.4■□□□□ 0.06
COL9A1-202ENST00000357250 CARD11Q9BXL7 1154 aa15.39■□□□□ 0.05
COL9A1-202ENST00000357250 FHOD3Q2V2M9 1422 aa15.38■□□□□ 0.05
COL9A1-202ENST00000357250 PPP1R15AO75807 674 aaPredicted RBP15.37■□□□□ 0.05
COL9A1-202ENST00000357250 GOLGA6L22H0YM25 854 aa15.36■□□□□ 0.05
COL9A1-202ENST00000357250 NBR1Q14596 966 aa15.35■□□□□ 0.05
COL9A1-202ENST00000357250 CHMP4BQ9H444 224 aaKnown RBP15.35■□□□□ 0.05
COL9A1-202ENST00000357250 PPP4R2Q9NY27 417 aa15.34■□□□□ 0.05
COL9A1-202ENST00000357250 PPM1GO15355 546 aaPredicted RBP15.33■□□□□ 0.05
COL9A1-202ENST00000357250 MS4A1P11836 297 aa15.33■□□□□ 0.04
COL9A1-202ENST00000357250 NCLP19338 710 aaKnown RBP15.32■□□□□ 0.04
COL9A1-202ENST00000357250 NUDCQ9Y266 331 aa15.32■□□□□ 0.04
COL9A1-202ENST00000357250 FANCD2Q9BXW9 1451 aa15.31■□□□□ 0.04
COL9A1-202ENST00000357250 CCER2I3L3R5 266 aa15.31■□□□□ 0.04
COL9A1-202ENST00000357250 RAB3GAP2Q9H2M9 1393 aa15.28■□□□□ 0.04
COL9A1-202ENST00000357250 CASC1Q6TDU7 716 aa15.28■□□□□ 0.04
COL9A1-202ENST00000357250 PNNQ9H307 717 aaKnown RBP15.28■□□□□ 0.04
COL9A1-202ENST00000357250 SUPT16HQ9Y5B9 1047 aaKnown RBP15.27■□□□□ 0.04
COL9A1-202ENST00000357250 RAD54L2Q9Y4B4 1467 aa15.27■□□□□ 0.03
COL9A1-202ENST00000357250 MAPK8IP3Q9UPT6 1336 aa15.26■□□□□ 0.03
COL9A1-202ENST00000357250 FTSJ3Q8IY81 847 aaKnown RBP15.25■□□□□ 0.03
COL9A1-202ENST00000357250 ARHGAP35Q9NRY4 1499 aa15.25■□□□□ 0.03
COL9A1-202ENST00000357250 SETD5Q9C0A6 1442 aa15.25■□□□□ 0.03
COL9A1-202ENST00000357250 PLEKHG5O94827 1062 aa15.25■□□□□ 0.03
COL9A1-202ENST00000357250 TRIM44Q96DX7 344 aaPredicted RBP15.24■□□□□ 0.03
COL9A1-202ENST00000357250 TMF1P82094 1093 aa15.24■□□□□ 0.03
COL9A1-202ENST00000357250 ERICH6BQ5W0A0 696 aa15.23■□□□□ 0.03
COL9A1-202ENST00000357250 IGF1RP08069 1367 aa15.23■□□□□ 0.03
COL9A1-202ENST00000357250 DCAF11Q8TEB1 546 aa15.23■□□□□ 0.03
COL9A1-202ENST00000357250 KANK1Q14678 1352 aa15.22■□□□□ 0.03
COL9A1-202ENST00000357250 FGD5Q6ZNL6 1462 aa15.21■□□□□ 0.03
COL9A1-202ENST00000357250 DNAJC5BQ9UF47 199 aa15.21■□□□□ 0.02
COL9A1-202ENST00000357250 JPH4Q96JJ6 628 aa15.2■□□□□ 0.02
COL9A1-202ENST00000357250 FMN1Q68DA7 1419 aa15.2■□□□□ 0.02
COL9A1-202ENST00000357250 PKD2Q13563 968 aa15.2■□□□□ 0.02
COL9A1-202ENST00000357250 NCAPD3P42695 1498 aa15.18■□□□□ 0.02
COL9A1-202ENST00000357250 POGKQ9P215 609 aa15.17■□□□□ 0.02
COL9A1-202ENST00000357250 HAP1P54257 671 aaPredicted RBP15.17■□□□□ 0.02
COL9A1-202ENST00000357250 HNRNPMP52272 730 aaKnown RBP eCLIP15.17■□□□□ 0.02
COL9A1-202ENST00000357250 CFAP44Q96MT7 982 aa15.17■□□□□ 0.02
COL9A1-202ENST00000357250 NESP48681 1621 aa15.16■□□□□ 0.02
COL9A1-202ENST00000357250 C14orf37Q86TY3 774 aa15.16■□□□□ 0.02
COL9A1-202ENST00000357250 ARID4BQ4LE39 1312 aaPredicted RBP15.15■□□□□ 0.02
COL9A1-202ENST00000357250 MPHOSPH9Q99550 1183 aa15.15■□□□□ 0.02
COL9A1-202ENST00000357250 HDGFP51858 240 aaKnown RBP15.15■□□□□ 0.02
COL9A1-202ENST00000357250 MLECQ14165 292 aa15.15■□□□□ 0.02
COL9A1-202ENST00000357250 CARMIL2Q6F5E8 1435 aa15.14■□□□□ 0.01
COL9A1-202ENST00000357250 CDK11BP21127 795 aaKnown RBP15.14■□□□□ 0.01
COL9A1-202ENST00000357250 HSPA5P11021 654 aaKnown RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms