RNA–Protein interactions for RNA: ENST00000356786.9

CCDC88B-202, Transcript of coiled-coil domain containing 88B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC88B, Length 4,915 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-202ENST00000356786 EIF4G2P78344 907 aaKnown RBP eCLIP25.99■■□□□ 1.75
CCDC88B-202ENST00000356786 EEA1Q15075 1411 aa25.96■■□□□ 1.75
CCDC88B-202ENST00000356786 WDR43Q15061 677 aaKnown RBP eCLIP25.93■■□□□ 1.74
CCDC88B-202ENST00000356786 CLIP1P30622 1438 aa25.93■■□□□ 1.74
CCDC88B-202ENST00000356786 PPM1GO15355 546 aaPredicted RBP25.9■■□□□ 1.74
CCDC88B-202ENST00000356786 NOP58Q9Y2X3 529 aaKnown RBP25.89■■□□□ 1.74
CCDC88B-202ENST00000356786 PPP4R2Q9NY27 417 aa25.89■■□□□ 1.74
CCDC88B-202ENST00000356786 SENP3-EIF4A1A0A087X0R7 540 aa25.88■■□□□ 1.73
CCDC88B-202ENST00000356786 BECN1Q14457 450 aa25.87■■□□□ 1.73
CCDC88B-202ENST00000356786 LAS1LQ9Y4W2 734 aaKnown RBP25.87■■□□□ 1.73
CCDC88B-202ENST00000356786 TRIM44Q96DX7 344 aaPredicted RBP25.86■■□□□ 1.73
CCDC88B-202ENST00000356786 ERICH6BQ5W0A0 696 aa25.85■■□□□ 1.73
CCDC88B-202ENST00000356786 GOLGA3Q08378 1498 aa25.85■■□□□ 1.73
CCDC88B-202ENST00000356786 CEP162Q5TB80 1403 aa25.84■■□□□ 1.73
CCDC88B-202ENST00000356786 KDM2AQ9Y2K7 1162 aa25.84■■□□□ 1.73
CCDC88B-202ENST00000356786 RBM19Q9Y4C8 960 aaKnown RBP25.83■■□□□ 1.73
CCDC88B-202ENST00000356786 DEKP35659 375 aaKnown RBP25.78■■□□□ 1.72
CCDC88B-202ENST00000356786 B4GALNT3Q6L9W6 998 aa25.76■■□□□ 1.71
CCDC88B-202ENST00000356786 CCDC88BA6NC98 1476 aa25.74■■□□□ 1.71
CCDC88B-202ENST00000356786 CHGAP10645 457 aaKnown RBP25.72■■□□□ 1.71
CCDC88B-202ENST00000356786 MTUS2Q5JR59 1369 aa25.72■■□□□ 1.71
CCDC88B-202ENST00000356786 TNIKQ9UKE5 1360 aa25.71■■□□□ 1.71
CCDC88B-202ENST00000356786 KIF27Q86VH2 1401 aa25.7■■□□□ 1.7
CCDC88B-202ENST00000356786 RRP7BPQ9NSQ0 103 aa25.69■■□□□ 1.7
CCDC88B-202ENST00000356786 NAP1L5Q96NT1 182 aaPredicted RBP25.67■■□□□ 1.7
CCDC88B-202ENST00000356786 CEP164Q9UPV0 1460 aa25.66■■□□□ 1.7
CCDC88B-202ENST00000356786 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.65■■□□□ 1.7
CCDC88B-202ENST00000356786 SIN3AQ96ST3 1273 aa25.65■■□□□ 1.7
CCDC88B-202ENST00000356786 WIZO95785 1651 aa25.65■■□□□ 1.7
CCDC88B-202ENST00000356786 SOGA1O94964 1423 aa25.63■■□□□ 1.69
CCDC88B-202ENST00000356786 GOLGA6L22H0YM25 854 aa25.63■■□□□ 1.69
CCDC88B-202ENST00000356786 TSHZ2Q9NRE2 1034 aa25.63■■□□□ 1.69
CCDC88B-202ENST00000356786 CHMP7Q8WUX9 453 aaPredicted RBP25.58■■□□□ 1.69
CCDC88B-202ENST00000356786 ABCC8Q09428 1581 aa25.57■■□□□ 1.68
CCDC88B-202ENST00000356786 TSPY4P0CV99 314 aa25.57■■□□□ 1.68
CCDC88B-202ENST00000356786 TSPY10P0CW01 314 aa25.57■■□□□ 1.68
CCDC88B-202ENST00000356786 RGS3P49796 1198 aa25.56■■□□□ 1.68
CCDC88B-202ENST00000356786 SMARCA2P51531 1590 aa25.55■■□□□ 1.68
CCDC88B-202ENST00000356786 NCLP19338 710 aaKnown RBP25.55■■□□□ 1.68
CCDC88B-202ENST00000356786 MYH16Q9H6N6 1097 aa25.55■■□□□ 1.68
CCDC88B-202ENST00000356786 TNNT2P45379 298 aaPredicted RBP25.55■■□□□ 1.68
CCDC88B-202ENST00000356786 TOP2AP11388 1531 aaKnown RBP25.52■■□□□ 1.68
CCDC88B-202ENST00000356786 PTMAP06454 111 aaKnown RBP25.49■■□□□ 1.67
CCDC88B-202ENST00000356786 CCER2I3L3R5 266 aa25.47■■□□□ 1.67
CCDC88B-202ENST00000356786 DNTTIP2Q5QJE6 756 aaKnown RBP25.45■■□□□ 1.67
CCDC88B-202ENST00000356786 STAG3Q9UJ98 1225 aa25.39■■□□□ 1.66
CCDC88B-202ENST00000356786 RGL3Q3MIN7 710 aa25.39■■□□□ 1.65
CCDC88B-202ENST00000356786 CUX2O14529 1486 aa25.38■■□□□ 1.65
CCDC88B-202ENST00000356786 SMARCA4P51532 1647 aa25.38■■□□□ 1.65
CCDC88B-202ENST00000356786 CARD11Q9BXL7 1154 aa25.38■■□□□ 1.65
CCDC88B-202ENST00000356786 KNSTRNQ9Y448 316 aa25.35■■□□□ 1.65
CCDC88B-202ENST00000356786 ATAD2BQ9ULI0 1458 aa25.34■■□□□ 1.65
CCDC88B-202ENST00000356786 CARMIL1Q5VZK9 1371 aa25.32■■□□□ 1.64
CCDC88B-202ENST00000356786 FTSJ3Q8IY81 847 aaKnown RBP25.32■■□□□ 1.64
CCDC88B-202ENST00000356786 NEUROD2Q15784 382 aa25.31■■□□□ 1.64
CCDC88B-202ENST00000356786 TIMELESSQ9UNS1 1208 aa25.3■■□□□ 1.64
CCDC88B-202ENST00000356786 ZBTB4Q9P1Z0 1013 aaPredicted RBP25.3■■□□□ 1.64
CCDC88B-202ENST00000356786 FRAT1Q92837 279 aaPredicted RBP25.29■■□□□ 1.64
CCDC88B-202ENST00000356786 L1TD1Q5T7N2 865 aaKnown RBP25.27■■□□□ 1.64
CCDC88B-202ENST00000356786 CCNB3Q8WWL7 1395 aa25.26■■□□□ 1.63
CCDC88B-202ENST00000356786 TPRNQ4KMQ1 711 aa25.26■■□□□ 1.63
CCDC88B-202ENST00000356786 NPM1P06748 294 aaKnown RBP eCLIP25.24■■□□□ 1.63
CCDC88B-202ENST00000356786 ERCC6Q03468 1493 aa25.23■■□□□ 1.63
CCDC88B-202ENST00000356786 CFAP53Q96M91 514 aa25.23■■□□□ 1.63
CCDC88B-202ENST00000356786 CDCA8Q53HL2 280 aa25.21■■□□□ 1.63
CCDC88B-202ENST00000356786 HSP90AB1P08238 724 aaKnown RBP25.21■■□□□ 1.63
CCDC88B-202ENST00000356786 PLCB2Q00722 1185 aa25.2■■□□□ 1.62
CCDC88B-202ENST00000356786 ESF1Q9H501 851 aaKnown RBP25.2■■□□□ 1.62
CCDC88B-202ENST00000356786 ARID4BQ4LE39 1312 aaPredicted RBP25.18■■□□□ 1.62
CCDC88B-202ENST00000356786 CC2D1BQ5T0F9 858 aaKnown RBP25.18■■□□□ 1.62
CCDC88B-202ENST00000356786 IPO9Q96P70 1041 aaKnown RBP25.16■■□□□ 1.62
CCDC88B-202ENST00000356786 CASC1Q6TDU7 716 aa25.16■■□□□ 1.62
CCDC88B-202ENST00000356786 PLEKHD1A6NEE1 506 aa25.15■■□□□ 1.62
CCDC88B-202ENST00000356786 CADPSQ9ULU8 1353 aa25.14■■□□□ 1.62
CCDC88B-202ENST00000356786 SPRYD3Q8NCJ5 442 aa25.14■■□□□ 1.61
CCDC88B-202ENST00000356786 HSPA5P11021 654 aaKnown RBP25.14■■□□□ 1.61
CCDC88B-202ENST00000356786 VPS8Q8N3P4 1428 aa25.13■■□□□ 1.61
CCDC88B-202ENST00000356786 TCERG1O14776 1098 aaKnown RBP25.13■■□□□ 1.61
CCDC88B-202ENST00000356786 HSCBQ8IWL3 235 aa25.12■■□□□ 1.61
CCDC88B-202ENST00000356786 MSNP26038 577 aaKnown RBP25.12■■□□□ 1.61
CCDC88B-202ENST00000356786 PNNQ9H307 717 aaKnown RBP25.11■■□□□ 1.61
CCDC88B-202ENST00000356786 FHAD1B1AJZ9 1412 aa25.11■■□□□ 1.61
CCDC88B-202ENST00000356786 ZRSR1Q15695 479 aaKnown RBP25.09■■□□□ 1.61
CCDC88B-202ENST00000356786 PDS5BQ9NTI5 1447 aa25.09■■□□□ 1.61
CCDC88B-202ENST00000356786 CFDP1Q9UEE9 299 aaPredicted RBP25.08■■□□□ 1.61
CCDC88B-202ENST00000356786 SENP3Q9H4L4 574 aaPredicted RBP25.08■■□□□ 1.6
CCDC88B-202ENST00000356786 CDK11BP21127 795 aaKnown RBP25.06■■□□□ 1.6
CCDC88B-202ENST00000356786 KCNH8Q96L42 1107 aa25.06■■□□□ 1.6
CCDC88B-202ENST00000356786 SLKQ9H2G2 1235 aaPredicted RBP25.06■■□□□ 1.6
CCDC88B-202ENST00000356786 RCAN3Q9UKA8 241 aa25.05■■□□□ 1.6
CCDC88B-202ENST00000356786 TDRD9Q8NDG6 1382 aaKnown RBP25.05■■□□□ 1.6
CCDC88B-202ENST00000356786 GZF1Q9H116 711 aaPredicted RBP25.04■■□□□ 1.6
CCDC88B-202ENST00000356786 MAPK8IP3Q9UPT6 1336 aa25.03■■□□□ 1.6
CCDC88B-202ENST00000356786 EIF4G1Q04637 1599 aaKnown RBP25.02■■□□□ 1.6
CCDC88B-202ENST00000356786 MS4A1P11836 297 aa25.02■■□□□ 1.6
CCDC88B-202ENST00000356786 SETD5Q9C0A6 1442 aa25.02■■□□□ 1.6
CCDC88B-202ENST00000356786 KANK4Q5T7N3 995 aaPredicted RBP25■■□□□ 1.59
CCDC88B-202ENST00000356786 RUSC2Q8N2Y8 1516 aa24.99■■□□□ 1.59
CCDC88B-202ENST00000356786 NUDCQ9Y266 331 aa24.98■■□□□ 1.59
CCDC88B-202ENST00000356786 CHAF1AQ13111 956 aaPredicted RBP24.95■■□□□ 1.59
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms