RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 FAM69CQ0P6D2 419 aa20.24■□□□□ 0.83
RTN3-204ENST00000354497 NPM1P06748 294 aaKnown RBP eCLIP20.21■□□□□ 0.83
RTN3-204ENST00000354497 ERICH3Q5RHP9 1530 aa20.19■□□□□ 0.82
RTN3-204ENST00000354497 JPH4Q96JJ6 628 aa20.19■□□□□ 0.82
RTN3-204ENST00000354497 TOP2BQ02880 1626 aa20.18■□□□□ 0.82
RTN3-204ENST00000354497 SUPT5HO00267 1087 aaKnown RBP20.18■□□□□ 0.82
RTN3-204ENST00000354497 BIVM-ERCC5R4GMW8 1640 aa20.18■□□□□ 0.82
RTN3-204ENST00000354497 ABCC10Q5T3U5 1492 aa20.17■□□□□ 0.82
RTN3-204ENST00000354497 DIP2BQ9P265 1576 aa20.11■□□□□ 0.81
RTN3-204ENST00000354497 RUSC2Q8N2Y8 1516 aa20.1■□□□□ 0.81
RTN3-204ENST00000354497 KDM6BO15054 1643 aa20.1■□□□□ 0.81
RTN3-204ENST00000354497 MAPKBP1O60336 1514 aa20.09■□□□□ 0.81
RTN3-204ENST00000354497 KDM4FA0A1W2PPD8 638 aa20.08■□□□□ 0.8
RTN3-204ENST00000354497 ADCY10Q96PN6 1610 aa20.06■□□□□ 0.8
RTN3-204ENST00000354497 TSPOAP1O95153 1857 aa20.03■□□□□ 0.8
RTN3-204ENST00000354497 TTBK1Q5TCY1 1321 aaPredicted RBP20■□□□□ 0.79
RTN3-204ENST00000354497 ILDR1Q86SU0 546 aaPredicted RBP20■□□□□ 0.79
RTN3-204ENST00000354497 KIAA0586Q9BVV6 1533 aa19.93■□□□□ 0.78
RTN3-204ENST00000354497 PTPRGP23470 1445 aa19.89■□□□□ 0.77
RTN3-204ENST00000354497 ADGRL1O94910 1474 aa19.85■□□□□ 0.77
RTN3-204ENST00000354497 CUL7Q14999 1698 aa19.83■□□□□ 0.77
RTN3-204ENST00000354497 IGF1RP08069 1367 aa19.83■□□□□ 0.76
RTN3-204ENST00000354497 ASXL2Q76L83 1435 aa19.82■□□□□ 0.76
RTN3-204ENST00000354497 KIF27Q86VH2 1401 aa19.81■□□□□ 0.76
RTN3-204ENST00000354497 PPP6R1Q9UPN7 881 aa19.81■□□□□ 0.76
RTN3-204ENST00000354497 ABCC2Q92887 1545 aa19.81■□□□□ 0.76
RTN3-204ENST00000354497 TNIKQ9UKE5 1360 aa19.8■□□□□ 0.76
RTN3-204ENST00000354497 CARMIL2Q6F5E8 1435 aa19.8■□□□□ 0.76
RTN3-204ENST00000354497 PLB1Q6P1J6 1458 aa19.79■□□□□ 0.76
RTN3-204ENST00000354497 ADRA2BP18089 450 aa19.77■□□□□ 0.76
RTN3-204ENST00000354497 PPRC1Q5VV67 1664 aaKnown RBP19.77■□□□□ 0.76
RTN3-204ENST00000354497 GLI2P10070 1586 aa19.76■□□□□ 0.75
RTN3-204ENST00000354497 CARMIL1Q5VZK9 1371 aa19.72■□□□□ 0.75
RTN3-204ENST00000354497 HECW2Q9P2P5 1572 aa19.72■□□□□ 0.75
RTN3-204ENST00000354497 UACAQ9BZF9 1416 aa19.7■□□□□ 0.74
RTN3-204ENST00000354497 IQGAP2Q13576 1575 aa19.69■□□□□ 0.74
RTN3-204ENST00000354497 COL17A1Q9UMD9 1497 aaPredicted RBP19.69■□□□□ 0.74
RTN3-204ENST00000354497 UHRF1BP1LA0JNW5 1464 aa19.68■□□□□ 0.74
RTN3-204ENST00000354497 EPRSP07814 1512 aaKnown RBP19.68■□□□□ 0.74
RTN3-204ENST00000354497 TEX14Q8IWB6 1497 aa19.67■□□□□ 0.74
RTN3-204ENST00000354497 MAP3K4Q9Y6R4 1608 aa19.65■□□□□ 0.74
RTN3-204ENST00000354497 DISP1Q96F81 1524 aa19.62■□□□□ 0.73
RTN3-204ENST00000354497 ZCCHC11Q5TAX3 1644 aaKnown RBP19.61■□□□□ 0.73
RTN3-204ENST00000354497 KDM5BQ9UGL1 1544 aa19.61■□□□□ 0.73
RTN3-204ENST00000354497 WDR7Q9Y4E6 1490 aa19.54■□□□□ 0.72
RTN3-204ENST00000354497 KIAA0556O60303 1618 aa19.53■□□□□ 0.72
RTN3-204ENST00000354497 UGGT2Q9NYU1 1516 aa19.52■□□□□ 0.71
RTN3-204ENST00000354497 PIAS4Q8N2W9 510 aaPredicted RBP19.51■□□□□ 0.71
RTN3-204ENST00000354497 KCNH8Q96L42 1107 aa19.51■□□□□ 0.71
RTN3-204ENST00000354497 RAPGEF2Q9Y4G8 1499 aa19.49■□□□□ 0.71
RTN3-204ENST00000354497 CD109Q6YHK3 1445 aa19.49■□□□□ 0.71
RTN3-204ENST00000354497 KIF21BO75037 1637 aa19.45■□□□□ 0.7
RTN3-204ENST00000354497 MAGI3Q5TCQ9 1506 aa19.44■□□□□ 0.7
RTN3-204ENST00000354497 CFAP43Q8NDM7 1665 aa19.44■□□□□ 0.7
RTN3-204ENST00000354497 FBXO41Q8TF61 875 aa19.42■□□□□ 0.7
RTN3-204ENST00000354497 ARID3CA6NKF2 412 aa19.37■□□□□ 0.69
RTN3-204ENST00000354497 GOLGA3Q08378 1498 aa19.36■□□□□ 0.69
RTN3-204ENST00000354497 ABCA8O94911 1581 aa19.35■□□□□ 0.69
RTN3-204ENST00000354497 CTTNBP2Q8WZ74 1663 aa19.35■□□□□ 0.69
RTN3-204ENST00000354497 PTPRMP28827 1452 aa19.3■□□□□ 0.68
RTN3-204ENST00000354497 ARAP3Q8WWN8 1544 aa19.29■□□□□ 0.68
RTN3-204ENST00000354497 ARID4BQ4LE39 1312 aaPredicted RBP19.28■□□□□ 0.68
RTN3-204ENST00000354497 FAM9AQ8IZU1 332 aaPredicted RBP19.27■□□□□ 0.68
RTN3-204ENST00000354497 P3H3Q8IVL6 736 aa19.25■□□□□ 0.67
RTN3-204ENST00000354497 ADAMTSL3P82987 1691 aa19.25■□□□□ 0.67
RTN3-204ENST00000354497 RAPGEF3O95398 923 aa19.25■□□□□ 0.67
RTN3-204ENST00000354497 ATP10BO94823 1461 aa19.2■□□□□ 0.66
RTN3-204ENST00000354497 PCF11O94913 1555 aaKnown RBP19.2■□□□□ 0.66
RTN3-204ENST00000354497 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.2■□□□□ 0.66
RTN3-204ENST00000354497 HNRNPUL2Q1KMD3 747 aaKnown RBP19.2■□□□□ 0.66
RTN3-204ENST00000354497 MADDQ8WXG6 1647 aa19.2■□□□□ 0.66
RTN3-204ENST00000354497 PHLDB1Q86UU1 1377 aa19.19■□□□□ 0.66
RTN3-204ENST00000354497 ABCA9Q8IUA7 1624 aa19.19■□□□□ 0.66
RTN3-204ENST00000354497 BCORL1Q5H9F3 1711 aa19.18■□□□□ 0.66
RTN3-204ENST00000354497 MSH5O43196 834 aa19.17■□□□□ 0.66
RTN3-204ENST00000354497 LMTK3Q96Q04 1460 aa19.16■□□□□ 0.66
RTN3-204ENST00000354497 NEO1Q92859 1461 aa19.15■□□□□ 0.66
RTN3-204ENST00000354497 RIMS1Q86UR5 1692 aaKnown RBP19.13■□□□□ 0.65
RTN3-204ENST00000354497 FRMPD1Q5SYB0 1578 aa19.13■□□□□ 0.65
RTN3-204ENST00000354497 PRXQ9BXM0 1461 aa19.13■□□□□ 0.65
RTN3-204ENST00000354497 HSPA2P54652 639 aa19.12■□□□□ 0.65
RTN3-204ENST00000354497 RAPGEF6Q8TEU7 1601 aa19.09■□□□□ 0.65
RTN3-204ENST00000354497 ARHGEF40Q8TER5 1519 aa19.08■□□□□ 0.64
RTN3-204ENST00000354497 RANGAP1P46060 587 aaPredicted RBP19.06■□□□□ 0.64
RTN3-204ENST00000354497 DENND4BO75064 1496 aaPredicted RBP19.06■□□□□ 0.64
RTN3-204ENST00000354497 MLECQ14165 292 aa19.03■□□□□ 0.64
RTN3-204ENST00000354497 POGZQ7Z3K3 1410 aa19.03■□□□□ 0.64
RTN3-204ENST00000354497 SAMD9Q5K651 1589 aa19.03■□□□□ 0.64
RTN3-204ENST00000354497 CERKQ8TCT0 537 aa19.02■□□□□ 0.64
RTN3-204ENST00000354497 AKNAQ7Z591 1439 aa19.01■□□□□ 0.63
RTN3-204ENST00000354497 FANCAO15360 1455 aa19.01■□□□□ 0.63
RTN3-204ENST00000354497 NUP153P49790 1475 aaKnown RBP19■□□□□ 0.63
RTN3-204ENST00000354497 RICTORQ6R327 1708 aa18.99■□□□□ 0.63
RTN3-204ENST00000354497 PLEKHD1A6NEE1 506 aa18.99■□□□□ 0.63
RTN3-204ENST00000354497 CFAP74Q9C0B2 1584 aa18.98■□□□□ 0.63
RTN3-204ENST00000354497 ZFYVE16Q7Z3T8 1539 aa18.97■□□□□ 0.63
RTN3-204ENST00000354497 FHOD3Q2V2M9 1422 aa18.97■□□□□ 0.63
RTN3-204ENST00000354497 YEATS2Q9ULM3 1422 aa18.96■□□□□ 0.63
RTN3-204ENST00000354497 EFCAB5A4FU69 1503 aa18.95■□□□□ 0.62
RTN3-204ENST00000354497 DISP3Q9P2K9 1392 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms