RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 FAM9BQ8IZU0 186 aa4.94□□□□□ -1.62
SYNE1-201ENST00000341594 PODXL2Q9NZ53 605 aa4.94□□□□□ -1.62
SYNE1-201ENST00000341594 P3H3Q8IVL6 736 aa4.94□□□□□ -1.62
SYNE1-201ENST00000341594 MPNDQ8N594 471 aa4.93□□□□□ -1.62
SYNE1-201ENST00000341594 CDK11BP21127 795 aaKnown RBP4.92□□□□□ -1.62
SYNE1-201ENST00000341594 FBXO3Q9UK99 471 aa4.92□□□□□ -1.62
SYNE1-201ENST00000341594 PRKCSHP14314 528 aaPredicted RBP4.92□□□□□ -1.62
SYNE1-201ENST00000341594 DHX37Q8IY37 1157 aaKnown RBP4.92□□□□□ -1.62
SYNE1-201ENST00000341594 C14orf37Q86TY3 774 aa4.91□□□□□ -1.62
SYNE1-201ENST00000341594 TRIM41Q8WV44 630 aa4.91□□□□□ -1.62
SYNE1-201ENST00000341594 ZNF526Q8TF50 670 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-201ENST00000341594 GZF1Q9H116 711 aaPredicted RBP4.91□□□□□ -1.62
SYNE1-201ENST00000341594 ANP32EQ9BTT0 268 aa4.91□□□□□ -1.62
SYNE1-201ENST00000341594 TCHHQ07283 1943 aa4.9□□□□□ -1.62
SYNE1-201ENST00000341594 B4GALNT3Q6L9W6 998 aa4.9□□□□□ -1.62
SYNE1-201ENST00000341594 PLCB2Q00722 1185 aa4.9□□□□□ -1.63
SYNE1-201ENST00000341594 VSIG10Q8N0Z9 540 aa4.89□□□□□ -1.63
SYNE1-201ENST00000341594 TSHZ2Q9NRE2 1034 aa4.89□□□□□ -1.63
SYNE1-201ENST00000341594 FOXD4L1Q9NU39 408 aa4.89□□□□□ -1.63
SYNE1-201ENST00000341594 HAP1P54257 671 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-201ENST00000341594 NCLP19338 710 aaKnown RBP4.88□□□□□ -1.63
SYNE1-201ENST00000341594 IL27Q8NEV9 243 aa4.88□□□□□ -1.63
SYNE1-201ENST00000341594 FOXD4L5Q5VV16 416 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-201ENST00000341594 FOXD4L4Q8WXT5 416 aaPredicted RBP4.88□□□□□ -1.63
SYNE1-201ENST00000341594 RB1CC1Q8TDY2 1594 aa4.88□□□□□ -1.63
SYNE1-201ENST00000341594 SKAP1Q86WV1 359 aa4.87□□□□□ -1.63
SYNE1-201ENST00000341594 ZNF316A6NFI3 1004 aaPredicted RBP4.86□□□□□ -1.63
SYNE1-201ENST00000341594 USP35Q9P2H5 1018 aa4.86□□□□□ -1.63
SYNE1-201ENST00000341594 RBM19Q9Y4C8 960 aaKnown RBP4.86□□□□□ -1.63
SYNE1-201ENST00000341594 PRDM2Q13029 1718 aa4.86□□□□□ -1.63
SYNE1-201ENST00000341594 ZNF428Q96B54 188 aa4.85□□□□□ -1.63
SYNE1-201ENST00000341594 NACADO15069 1562 aa4.85□□□□□ -1.63
SYNE1-201ENST00000341594 BAZ1BQ9UIG0 1483 aaKnown RBP4.85□□□□□ -1.63
SYNE1-201ENST00000341594 NAP1L5Q96NT1 182 aaPredicted RBP4.85□□□□□ -1.63
SYNE1-201ENST00000341594 VIRMAQ69YN4 1812 aaKnown RBP4.84□□□□□ -1.63
SYNE1-201ENST00000341594 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP4.84□□□□□ -1.63
SYNE1-201ENST00000341594 WRNQ14191 1432 aaPredicted RBP eCLIP4.84□□□□□ -1.63
SYNE1-201ENST00000341594 KCNA4P22459 653 aa4.83□□□□□ -1.64
SYNE1-201ENST00000341594 CCDC9Q9Y3X0 531 aaKnown RBP4.83□□□□□ -1.64
SYNE1-201ENST00000341594 SIN3AQ96ST3 1273 aa4.83□□□□□ -1.64
SYNE1-201ENST00000341594 TNNT2P45379 298 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-201ENST00000341594 FAM50AQ14320 339 aaKnown RBP4.82□□□□□ -1.64
SYNE1-201ENST00000341594 ZBTB47Q9UFB7 747 aaPredicted RBP4.82□□□□□ -1.64
SYNE1-201ENST00000341594 KDM2AQ9Y2K7 1162 aa4.82□□□□□ -1.64
SYNE1-201ENST00000341594 RBM10P98175 930 aaKnown RBP4.81□□□□□ -1.64
SYNE1-201ENST00000341594 HSP90B1P14625 803 aaKnown RBP4.81□□□□□ -1.64
SYNE1-201ENST00000341594 MYH10P35580 1976 aa4.8□□□□□ -1.64
SYNE1-201ENST00000341594 SKIDA1Q1XH10 827 aa4.79□□□□□ -1.64
SYNE1-201ENST00000341594 MYH11P35749 1972 aa4.79□□□□□ -1.64
SYNE1-201ENST00000341594 ABCC9O60706 1549 aa4.79□□□□□ -1.64
SYNE1-201ENST00000341594 MSH5O43196 834 aa4.78□□□□□ -1.64
SYNE1-201ENST00000341594 GOLGA3Q08378 1498 aa4.78□□□□□ -1.64
SYNE1-201ENST00000341594 BRPF3Q9ULD4 1205 aa4.78□□□□□ -1.64
SYNE1-201ENST00000341594 PAK3O75914 559 aaPredicted RBP4.77□□□□□ -1.65
SYNE1-201ENST00000341594 MYH9P35579 1960 aaKnown RBP4.77□□□□□ -1.65
SYNE1-201ENST00000341594 KDM4AO75164 1064 aa4.76□□□□□ -1.65
SYNE1-201ENST00000341594 PTMSP20962 102 aa4.76□□□□□ -1.65
SYNE1-201ENST00000341594 FOXD4L6Q3SYB3 417 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-201ENST00000341594 FOXD4L3Q6VB84 417 aaPredicted RBP4.76□□□□□ -1.65
SYNE1-201ENST00000341594 NEFMP07197 916 aa4.76□□□□□ -1.65
SYNE1-201ENST00000341594 TRERF1Q96PN7 1200 aa4.76□□□□□ -1.65
SYNE1-201ENST00000341594 HNRNPUQ00839 825 aaKnown RBP eCLIP4.76□□□□□ -1.65
SYNE1-201ENST00000341594 PLCD3Q8N3E9 789 aa4.75□□□□□ -1.65
SYNE1-201ENST00000341594 MICAL3Q7RTP6 2002 aa4.75□□□□□ -1.65
SYNE1-201ENST00000341594 PDE4CQ08493 712 aa4.75□□□□□ -1.65
SYNE1-201ENST00000341594 PLIN1O60240 522 aa4.75□□□□□ -1.65
SYNE1-201ENST00000341594 IBSPP21815 317 aaPredicted RBP4.75□□□□□ -1.65
SYNE1-201ENST00000341594 DTNBO60941 627 aa4.74□□□□□ -1.65
SYNE1-201ENST00000341594 RGS3P49796 1198 aa4.74□□□□□ -1.65
SYNE1-201ENST00000341594 RBM25P49756 843 aaKnown RBP4.74□□□□□ -1.65
SYNE1-201ENST00000341594 MAP3K1Q13233 1512 aa4.74□□□□□ -1.65
SYNE1-201ENST00000341594 IGSF3O75054 1194 aa4.74□□□□□ -1.65
SYNE1-201ENST00000341594 PRDM10Q9NQV6 1147 aa4.73□□□□□ -1.65
SYNE1-201ENST00000341594 NEUROD2Q15784 382 aa4.73□□□□□ -1.65
SYNE1-201ENST00000341594 CHIC2Q9UKJ5 165 aa4.73□□□□□ -1.65
SYNE1-201ENST00000341594 FANCIQ9NVI1 1328 aa4.72□□□□□ -1.65
SYNE1-201ENST00000341594 ZFP91Q96JP5 570 aaPredicted RBP4.72□□□□□ -1.65
SYNE1-201ENST00000341594 PPARDQ03181 441 aa4.72□□□□□ -1.65
SYNE1-201ENST00000341594 ANP32AP39687 249 aaKnown RBP4.71□□□□□ -1.65
SYNE1-201ENST00000341594 BAZ1AQ9NRL2 1556 aaPredicted RBP4.71□□□□□ -1.65
SYNE1-201ENST00000341594 KIF21BO75037 1637 aa4.71□□□□□ -1.65
SYNE1-201ENST00000341594 CERS3Q8IU89 383 aa4.7□□□□□ -1.66
SYNE1-201ENST00000341594 AK9Q5TCS8 1911 aa4.7□□□□□ -1.66
SYNE1-201ENST00000341594 NPHP1O15259 732 aa4.69□□□□□ -1.66
SYNE1-201ENST00000341594 TCERG1O14776 1098 aaKnown RBP4.69□□□□□ -1.66
SYNE1-201ENST00000341594 CCER2I3L3R5 266 aa4.69□□□□□ -1.66
SYNE1-201ENST00000341594 BCCIPQ9P287 314 aaKnown RBP eCLIP4.69□□□□□ -1.66
SYNE1-201ENST00000341594 TMEM132AQ24JP5 1023 aa4.69□□□□□ -1.66
SYNE1-201ENST00000341594 FAM177BA6PVY3 158 aa4.69□□□□□ -1.66
SYNE1-201ENST00000341594 TRIM44Q96DX7 344 aaPredicted RBP4.69□□□□□ -1.66
SYNE1-201ENST00000341594 APBB1O00213 710 aa4.69□□□□□ -1.66
SYNE1-201ENST00000341594 KIF21AQ7Z4S6 1674 aa4.68□□□□□ -1.66
SYNE1-201ENST00000341594 KLHL34Q8N239 644 aa4.68□□□□□ -1.66
SYNE1-201ENST00000341594 FBXW7Q969H0 707 aa4.68□□□□□ -1.66
SYNE1-201ENST00000341594 NGEFQ8N5V2 710 aa4.68□□□□□ -1.66
SYNE1-201ENST00000341594 HMGB1P1B2RPK0 211 aaPredicted RBP4.68□□□□□ -1.66
SYNE1-201ENST00000341594 E9PSI1 815 aa4.68□□□□□ -1.66
SYNE1-201ENST00000341594 CHMP4AQ9BY43 222 aa4.68□□□□□ -1.66
SYNE1-201ENST00000341594 AAMPQ13685 434 aa4.68□□□□□ -1.66
SYNE1-201ENST00000341594 FOXD1Q16676 465 aa4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms