RNA–Protein interactions for RNA: ENST00000332853.8

VSTM4-202, Transcript of V-set and transmembrane domain containing 4, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VSTM4, Length 6,392 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VSTM4-202ENST00000332853 SLC24A1O60721 1099 aa17.8■□□□□ 0.44
VSTM4-202ENST00000332853 CUX2O14529 1486 aa17.79■□□□□ 0.44
VSTM4-202ENST00000332853 STAG3Q9UJ98 1225 aa17.76■□□□□ 0.43
VSTM4-202ENST00000332853 SENP3Q9H4L4 574 aaPredicted RBP17.76■□□□□ 0.43
VSTM4-202ENST00000332853 SCAF1Q9H7N4 1312 aaKnown RBP17.74■□□□□ 0.43
VSTM4-202ENST00000332853 TOP2AP11388 1531 aaKnown RBP17.74■□□□□ 0.43
VSTM4-202ENST00000332853 CARMIL1Q5VZK9 1371 aa17.74■□□□□ 0.43
VSTM4-202ENST00000332853 ESF1Q9H501 851 aaKnown RBP17.73■□□□□ 0.43
VSTM4-202ENST00000332853 ERCC6Q03468 1493 aa17.73■□□□□ 0.43
VSTM4-202ENST00000332853 PLEKHD1A6NEE1 506 aa17.73■□□□□ 0.43
VSTM4-202ENST00000332853 SIN3AQ96ST3 1273 aa17.73■□□□□ 0.43
VSTM4-202ENST00000332853 EIF4G1Q04637 1599 aaKnown RBP17.72■□□□□ 0.43
VSTM4-202ENST00000332853 SMARCA2P51531 1590 aa17.71■□□□□ 0.43
VSTM4-202ENST00000332853 NEFMP07197 916 aa17.69■□□□□ 0.42
VSTM4-202ENST00000332853 TMC1Q8TDI8 760 aa17.69■□□□□ 0.42
VSTM4-202ENST00000332853 MRS2Q9HD23 443 aa17.69■□□□□ 0.42
VSTM4-202ENST00000332853 CFDP1Q9UEE9 299 aaPredicted RBP17.68■□□□□ 0.42
VSTM4-202ENST00000332853 EIF4G2P78344 907 aaKnown RBP eCLIP17.67■□□□□ 0.42
VSTM4-202ENST00000332853 IRX6P78412 446 aaPredicted RBP17.66■□□□□ 0.42
VSTM4-202ENST00000332853 RGL3Q3MIN7 710 aa17.66■□□□□ 0.42
VSTM4-202ENST00000332853 NPM2Q86SE8 214 aaKnown RBP17.66■□□□□ 0.42
VSTM4-202ENST00000332853 KANK4Q5T7N3 995 aaPredicted RBP17.66■□□□□ 0.42
VSTM4-202ENST00000332853 SENP3-EIF4A1A0A087X0R7 540 aa17.65■□□□□ 0.42
VSTM4-202ENST00000332853 ZBTB47Q9UFB7 747 aaPredicted RBP17.64■□□□□ 0.41
VSTM4-202ENST00000332853 CCNB3Q8WWL7 1395 aa17.63■□□□□ 0.41
VSTM4-202ENST00000332853 SMARCA4P51532 1647 aa17.62■□□□□ 0.41
VSTM4-202ENST00000332853 VPS8Q8N3P4 1428 aa17.6■□□□□ 0.41
VSTM4-202ENST00000332853 FHAD1B1AJZ9 1412 aa17.58■□□□□ 0.4
VSTM4-202ENST00000332853 RUSC2Q8N2Y8 1516 aa17.55■□□□□ 0.4
VSTM4-202ENST00000332853 TDRD9Q8NDG6 1382 aaKnown RBP17.55■□□□□ 0.4
VSTM4-202ENST00000332853 ANP32AP39687 249 aaKnown RBP17.54■□□□□ 0.4
VSTM4-202ENST00000332853 ATAD2BQ9ULI0 1458 aa17.53■□□□□ 0.4
VSTM4-202ENST00000332853 WDR43Q15061 677 aaKnown RBP eCLIP17.53■□□□□ 0.4
VSTM4-202ENST00000332853 RAPGEF2Q9Y4G8 1499 aa17.49■□□□□ 0.39
VSTM4-202ENST00000332853 CCDC136Q96JN2 1154 aa17.48■□□□□ 0.39
VSTM4-202ENST00000332853 CARD11Q9BXL7 1154 aa17.47■□□□□ 0.39
VSTM4-202ENST00000332853 ARHGAP35Q9NRY4 1499 aa17.46■□□□□ 0.39
VSTM4-202ENST00000332853 FOXD1Q16676 465 aa17.44■□□□□ 0.38
VSTM4-202ENST00000332853 SETD5Q9C0A6 1442 aa17.43■□□□□ 0.38
VSTM4-202ENST00000332853 PDS5BQ9NTI5 1447 aa17.43■□□□□ 0.38
VSTM4-202ENST00000332853 CADPSQ9ULU8 1353 aa17.43■□□□□ 0.38
VSTM4-202ENST00000332853 FHOD3Q2V2M9 1422 aa17.39■□□□□ 0.37
VSTM4-202ENST00000332853 RAB3GAP2Q9H2M9 1393 aa17.38■□□□□ 0.37
VSTM4-202ENST00000332853 PLEKHG5O94827 1062 aa17.37■□□□□ 0.37
VSTM4-202ENST00000332853 SUPT16HQ9Y5B9 1047 aaKnown RBP17.36■□□□□ 0.37
VSTM4-202ENST00000332853 PPP1R15AO75807 674 aaPredicted RBP17.35■□□□□ 0.37
VSTM4-202ENST00000332853 DCAF11Q8TEB1 546 aa17.34■□□□□ 0.37
VSTM4-202ENST00000332853 GOLGA6L2Q8N9W4 650 aaPredicted RBP17.33■□□□□ 0.36
VSTM4-202ENST00000332853 FMN1Q68DA7 1419 aa17.31■□□□□ 0.36
VSTM4-202ENST00000332853 KNSTRNQ9Y448 316 aa17.31■□□□□ 0.36
VSTM4-202ENST00000332853 CC2D1BQ5T0F9 858 aaKnown RBP17.3■□□□□ 0.36
VSTM4-202ENST00000332853 ARID4BQ4LE39 1312 aaPredicted RBP17.3■□□□□ 0.36
VSTM4-202ENST00000332853 ZBTB7CA1YPR0 619 aa17.28■□□□□ 0.36
VSTM4-202ENST00000332853 FANCD2Q9BXW9 1451 aa17.28■□□□□ 0.36
VSTM4-202ENST00000332853 HSPA5P11021 654 aaKnown RBP17.28■□□□□ 0.36
VSTM4-202ENST00000332853 PKD2Q13563 968 aa17.27■□□□□ 0.35
VSTM4-202ENST00000332853 NBR1Q14596 966 aa17.26■□□□□ 0.35
VSTM4-202ENST00000332853 TNNT2P45379 298 aaPredicted RBP17.25■□□□□ 0.35
VSTM4-202ENST00000332853 C14orf37Q86TY3 774 aa17.24■□□□□ 0.35
VSTM4-202ENST00000332853 CARMIL2Q6F5E8 1435 aa17.24■□□□□ 0.35
VSTM4-202ENST00000332853 PPM1GO15355 546 aaPredicted RBP17.24■□□□□ 0.35
VSTM4-202ENST00000332853 MPHOSPH9Q99550 1183 aa17.24■□□□□ 0.35
VSTM4-202ENST00000332853 NEUROD2Q15784 382 aa17.23■□□□□ 0.35
VSTM4-202ENST00000332853 UPF2Q9HAU5 1272 aaKnown RBP17.23■□□□□ 0.35
VSTM4-202ENST00000332853 HSP90AA1P07900 732 aaKnown RBP17.21■□□□□ 0.35
VSTM4-202ENST00000332853 CDCA8Q53HL2 280 aa17.21■□□□□ 0.35
VSTM4-202ENST00000332853 TIMELESSQ9UNS1 1208 aa17.18■□□□□ 0.34
VSTM4-202ENST00000332853 HNRNPMP52272 730 aaKnown RBP eCLIP17.18■□□□□ 0.34
VSTM4-202ENST00000332853 RAD54L2Q9Y4B4 1467 aa17.17■□□□□ 0.34
VSTM4-202ENST00000332853 FGD5Q6ZNL6 1462 aa17.17■□□□□ 0.34
VSTM4-202ENST00000332853 MLECQ14165 292 aa17.16■□□□□ 0.34
VSTM4-202ENST00000332853 POGKQ9P215 609 aa17.15■□□□□ 0.34
VSTM4-202ENST00000332853 NUP155O75694 1391 aa17.15■□□□□ 0.34
VSTM4-202ENST00000332853 CFAP53Q96M91 514 aa17.15■□□□□ 0.34
VSTM4-202ENST00000332853 GGT6Q6P531 493 aa17.14■□□□□ 0.34
VSTM4-202ENST00000332853 TMF1P82094 1093 aa17.14■□□□□ 0.33
VSTM4-202ENST00000332853 KANK1Q14678 1352 aa17.13■□□□□ 0.33
VSTM4-202ENST00000332853 SAFB2Q14151 953 aaKnown RBP eCLIP17.13■□□□□ 0.335e-7■■■■□ 21.7
VSTM4-202ENST00000332853 JPH4Q96JJ6 628 aa17.11■□□□□ 0.33
VSTM4-202ENST00000332853 DHX57Q6P158 1386 aaKnown RBP17.11■□□□□ 0.33
VSTM4-202ENST00000332853 LAS1LQ9Y4W2 734 aaKnown RBP17.11■□□□□ 0.33
VSTM4-202ENST00000332853 IGF1RP08069 1367 aa17.11■□□□□ 0.33
VSTM4-202ENST00000332853 ANKRD30AQ9BXX3 1397 aa17.1■□□□□ 0.33
VSTM4-202ENST00000332853 L3MBTL2Q969R5 705 aa17.09■□□□□ 0.33
VSTM4-202ENST00000332853 B4GALNT3Q6L9W6 998 aa17.09■□□□□ 0.33
VSTM4-202ENST00000332853 ARXQ96QS3 562 aa17.09■□□□□ 0.33
VSTM4-202ENST00000332853 CCDC18Q5T9S5 1454 aa17.07■□□□□ 0.32
VSTM4-202ENST00000332853 ROCK2O75116 1388 aaKnown RBP17.07■□□□□ 0.32
VSTM4-202ENST00000332853 CCER2I3L3R5 266 aa17.07■□□□□ 0.32
VSTM4-202ENST00000332853 SYNJ1O43426 1573 aa17.06■□□□□ 0.32
VSTM4-202ENST00000332853 MYH16Q9H6N6 1097 aa17.06■□□□□ 0.32
VSTM4-202ENST00000332853 A0A0G2JS52 829 aa17.05■□□□□ 0.32
VSTM4-202ENST00000332853 U2SURPO15042 1029 aaKnown RBP17.05■□□□□ 0.32
VSTM4-202ENST00000332853 FRAT1Q92837 279 aaPredicted RBP17.05■□□□□ 0.32
VSTM4-202ENST00000332853 PPP4R2Q9NY27 417 aa17.04■□□□□ 0.32
VSTM4-202ENST00000332853 STK26Q9P289 416 aa17.04■□□□□ 0.32
VSTM4-202ENST00000332853 KIF21BO75037 1637 aa17.04■□□□□ 0.32
VSTM4-202ENST00000332853 EFCAB2Q5VUJ9 269 aa17.04■□□□□ 0.32
VSTM4-202ENST00000332853 GAPVD1Q14C86 1478 aa17.03■□□□□ 0.32
VSTM4-202ENST00000332853 MAPK8IP3Q9UPT6 1336 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms