RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
COL7A1-201ENST00000328333 USP35Q9P2H5 1018 aa18.5■□□□□ 0.55
COL7A1-201ENST00000328333 MS4A1P11836 297 aa18.49■□□□□ 0.55
COL7A1-201ENST00000328333 CDCA8Q53HL2 280 aa18.46■□□□□ 0.55
COL7A1-201ENST00000328333 ESF1Q9H501 851 aaKnown RBP18.45■□□□□ 0.54
COL7A1-201ENST00000328333 PPP4R2Q9NY27 417 aa18.45■□□□□ 0.54
COL7A1-201ENST00000328333 EIF4G2P78344 907 aaKnown RBP eCLIP18.45■□□□□ 0.54
COL7A1-201ENST00000328333 FTSJ3Q8IY81 847 aaKnown RBP18.44■□□□□ 0.54
COL7A1-201ENST00000328333 EEA1Q15075 1411 aa18.44■□□□□ 0.54
COL7A1-201ENST00000328333 MIER1Q8N108 512 aa18.37■□□□□ 0.53
COL7A1-201ENST00000328333 CFAP53Q96M91 514 aa18.37■□□□□ 0.53
COL7A1-201ENST00000328333 HSCBQ8IWL3 235 aa18.37■□□□□ 0.53
COL7A1-201ENST00000328333 KIAA2012Q0VF49 1180 aa18.37■□□□□ 0.53
COL7A1-201ENST00000328333 RSF1Q96T23 1441 aaPredicted RBP18.36■□□□□ 0.53
COL7A1-201ENST00000328333 STAG3Q9UJ98 1225 aa18.34■□□□□ 0.53
COL7A1-201ENST00000328333 HSP90AB1P08238 724 aaKnown RBP18.34■□□□□ 0.53
COL7A1-201ENST00000328333 TNNT3P45378 269 aaPredicted RBP18.34■□□□□ 0.53
COL7A1-201ENST00000328333 SCRIBQ14160 1630 aa18.33■□□□□ 0.53
COL7A1-201ENST00000328333 SYAP1Q96A49 352 aaPredicted RBP18.33■□□□□ 0.53
COL7A1-201ENST00000328333 CLIP1P30622 1438 aa18.32■□□□□ 0.52
COL7A1-201ENST00000328333 GOLGA6L4A6NEF3 574 aa18.31■□□□□ 0.52
COL7A1-201ENST00000328333 DEKP35659 375 aaKnown RBP18.3■□□□□ 0.52
COL7A1-201ENST00000328333 GBP4Q96PP9 640 aa18.3■□□□□ 0.52
COL7A1-201ENST00000328333 MTUS2Q5JR59 1369 aa18.3■□□□□ 0.52
COL7A1-201ENST00000328333 PNNQ9H307 717 aaKnown RBP18.3■□□□□ 0.52
COL7A1-201ENST00000328333 ZNF777Q9ULD5 760 aaPredicted RBP18.3■□□□□ 0.52
COL7A1-201ENST00000328333 RSPH6AQ9H0K4 717 aa18.29■□□□□ 0.52
COL7A1-201ENST00000328333 MCCP23508 829 aa18.29■□□□□ 0.52
COL7A1-201ENST00000328333 GOLGA6L1Q8N7Z2 621 aa18.27■□□□□ 0.52
COL7A1-201ENST00000328333 GOLGA3Q08378 1498 aa18.27■□□□□ 0.51
COL7A1-201ENST00000328333 SALL2Q9Y467 1007 aaPredicted RBP18.26■□□□□ 0.51
COL7A1-201ENST00000328333 KNSTRNQ9Y448 316 aa18.26■□□□□ 0.51
COL7A1-201ENST00000328333 LAS1LQ9Y4W2 734 aaKnown RBP18.24■□□□□ 0.51
COL7A1-201ENST00000328333 RTN4Q9NQC3 1192 aaKnown RBP18.22■□□□□ 0.51
COL7A1-201ENST00000328333 IRX6P78412 446 aaPredicted RBP18.22■□□□□ 0.51
COL7A1-201ENST00000328333 DRC7Q8IY82 874 aa18.22■□□□□ 0.51
COL7A1-201ENST00000328333 PHF14O94880 888 aa18.21■□□□□ 0.51
COL7A1-201ENST00000328333 HTATSF1O43719 755 aaKnown RBP18.21■□□□□ 0.51
COL7A1-201ENST00000328333 HAP1P54257 671 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-201ENST00000328333 SETQ01105 290 aaPredicted RBP18.21■□□□□ 0.51
COL7A1-201ENST00000328333 TSPY4P0CV99 314 aa18.18■□□□□ 0.5
COL7A1-201ENST00000328333 TSPY10P0CW01 314 aa18.18■□□□□ 0.5
COL7A1-201ENST00000328333 FBLN2P98095 1184 aa18.18■□□□□ 0.5
COL7A1-201ENST00000328333 SUPT16HQ9Y5B9 1047 aaKnown RBP18.18■□□□□ 0.5
COL7A1-201ENST00000328333 FGD1P98174 961 aa18.18■□□□□ 0.5
COL7A1-201ENST00000328333 CCDC34Q96HJ3 373 aa18.17■□□□□ 0.5
COL7A1-201ENST00000328333 PLCB2Q00722 1185 aa18.17■□□□□ 0.5
COL7A1-201ENST00000328333 NOC3LQ8WTT2 800 aaKnown RBP18.14■□□□□ 0.49
COL7A1-201ENST00000328333 MAPK8IP3Q9UPT6 1336 aa18.13■□□□□ 0.49
COL7A1-201ENST00000328333 HSP90AA2PQ14568 343 aaPredicted RBP18.13■□□□□ 0.49
COL7A1-201ENST00000328333 ZCCHC6Q5VYS8 1495 aaKnown RBP18.13■□□□□ 0.49
COL7A1-201ENST00000328333 CSPP1Q1MSJ5 1256 aa18.12■□□□□ 0.49
COL7A1-201ENST00000328333 TPM4P67936 248 aa18.12■□□□□ 0.49
COL7A1-201ENST00000328333 CCER2I3L3R5 266 aa18.11■□□□□ 0.49
COL7A1-201ENST00000328333 NUDCQ9Y266 331 aa18.11■□□□□ 0.49
COL7A1-201ENST00000328333 KCNJ4P48050 445 aa18.1■□□□□ 0.49
COL7A1-201ENST00000328333 CEP162Q5TB80 1403 aa18.1■□□□□ 0.49
COL7A1-201ENST00000328333 CHGAP10645 457 aaKnown RBP18.09■□□□□ 0.49
COL7A1-201ENST00000328333 TIMELESSQ9UNS1 1208 aa18.09■□□□□ 0.49
COL7A1-201ENST00000328333 P3H3Q8IVL6 736 aa18.07■□□□□ 0.48
COL7A1-201ENST00000328333 CEP164Q9UPV0 1460 aa18.07■□□□□ 0.48
COL7A1-201ENST00000328333 RGS3P49796 1198 aa18.07■□□□□ 0.48
COL7A1-201ENST00000328333 GOLGA6L3A6NEY3 463 aa18.07■□□□□ 0.48
COL7A1-201ENST00000328333 CALRP27797 417 aaKnown RBP18.06■□□□□ 0.48
COL7A1-201ENST00000328333 TCERG1O14776 1098 aaKnown RBP18.05■□□□□ 0.48
COL7A1-201ENST00000328333 A0A0U1RQG5 324 aaPredicted RBP18.05■□□□□ 0.48
COL7A1-201ENST00000328333 RBM19Q9Y4C8 960 aaKnown RBP18.04■□□□□ 0.48
COL7A1-201ENST00000328333 ABCC9O60706 1549 aa18.02■□□□□ 0.48
COL7A1-201ENST00000328333 DDX11L8A8MPP1 907 aa18.02■□□□□ 0.47
COL7A1-201ENST00000328333 GPS2Q13227 327 aa18.01■□□□□ 0.47
COL7A1-201ENST00000328333 FHAD1B1AJZ9 1412 aa18■□□□□ 0.47
COL7A1-201ENST00000328333 GNL2Q13823 731 aaKnown RBP18■□□□□ 0.47
COL7A1-201ENST00000328333 KIAA1211Q6ZU35 1233 aa17.99■□□□□ 0.47
COL7A1-201ENST00000328333 CHMP4AQ9BY43 222 aa17.99■□□□□ 0.47
COL7A1-201ENST00000328333 OS9Q13438 667 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-201ENST00000328333 KDM2AQ9Y2K7 1162 aa17.98■□□□□ 0.47
COL7A1-201ENST00000328333 MTERF4Q7Z6M4 381 aaKnown RBP17.98■□□□□ 0.47
COL7A1-201ENST00000328333 IPO8O15397 1037 aaKnown RBP17.98■□□□□ 0.47
COL7A1-201ENST00000328333 NPM1P06748 294 aaKnown RBP eCLIP17.98■□□□□ 0.47
COL7A1-201ENST00000328333 PHLDB1Q86UU1 1377 aa17.97■□□□□ 0.47
COL7A1-201ENST00000328333 IPO9Q96P70 1041 aaKnown RBP17.96■□□□□ 0.47
COL7A1-201ENST00000328333 CALD1Q05682 793 aaKnown RBP17.96■□□□□ 0.47
COL7A1-201ENST00000328333 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.94■□□□□ 0.463e-6■■■□□ 16
COL7A1-201ENST00000328333 ARID3CA6NKF2 412 aa17.94■□□□□ 0.46
COL7A1-201ENST00000328333 SKOR2Q2VWA4 1001 aaPredicted RBP17.93■□□□□ 0.46
COL7A1-201ENST00000328333 GOLGA2Q08379 1002 aa17.92■□□□□ 0.46
COL7A1-201ENST00000328333 CCDC70Q6NSX1 233 aa17.92■□□□□ 0.46
COL7A1-201ENST00000328333 NOM1Q5C9Z4 860 aaKnown RBP17.91■□□□□ 0.46
COL7A1-201ENST00000328333 CHIC2Q9UKJ5 165 aa17.91■□□□□ 0.46
COL7A1-201ENST00000328333 KIF3AQ9Y496 699 aa17.91■□□□□ 0.46
COL7A1-201ENST00000328333 AMER1Q5JTC6 1135 aaPredicted RBP17.91■□□□□ 0.46
COL7A1-201ENST00000328333 CARD11Q9BXL7 1154 aa17.91■□□□□ 0.46
COL7A1-201ENST00000328333 TEX35Q5T0J7 233 aa17.91■□□□□ 0.46
COL7A1-201ENST00000328333 CHMP4CQ96CF2 233 aa17.9■□□□□ 0.46
COL7A1-201ENST00000328333 KTN1Q86UP2 1357 aaKnown RBP17.9■□□□□ 0.46
COL7A1-201ENST00000328333 FRAT1Q92837 279 aaPredicted RBP17.9■□□□□ 0.46
COL7A1-201ENST00000328333 PPP1R15AO75807 674 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-201ENST00000328333 B4GALNT3Q6L9W6 998 aa17.89■□□□□ 0.45
COL7A1-201ENST00000328333 RWDD1Q9H446 243 aaPredicted RBP17.89■□□□□ 0.45
COL7A1-201ENST00000328333 ATP6V1DQ9Y5K8 247 aa17.89■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms