RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 ADAMTS12P58397 1594 aa28.78■■■□□ 2.2
USP39-201ENST00000323701 FHAD1B1AJZ9 1412 aa28.77■■■□□ 2.2
USP39-201ENST00000323701 CTTNBP2Q8WZ74 1663 aa28.75■■■□□ 2.19
USP39-201ENST00000323701 SNAPC4Q5SXM2 1469 aa28.71■■■□□ 2.19
USP39-201ENST00000323701 P3H3Q8IVL6 736 aa28.68■■■□□ 2.18
USP39-201ENST00000323701 FHOD3Q2V2M9 1422 aa28.59■■■□□ 2.17
USP39-201ENST00000323701 MAGI1Q96QZ7 1491 aaPredicted RBP28.55■■■□□ 2.16
USP39-201ENST00000323701 EFCAB5A4FU69 1503 aa28.54■■■□□ 2.16
USP39-201ENST00000323701 APLP2Q06481 763 aa28.54■■■□□ 2.16
USP39-201ENST00000323701 GRIN2AQ12879 1464 aa28.53■■■□□ 2.16
USP39-201ENST00000323701 KANK4Q5T7N3 995 aaPredicted RBP28.5■■■□□ 2.15
USP39-201ENST00000323701 SAMD9Q5K651 1589 aa28.5■■■□□ 2.15
USP39-201ENST00000323701 SYNJ2O15056 1496 aa28.48■■■□□ 2.15
USP39-201ENST00000323701 IQGAP2Q13576 1575 aa28.47■■■□□ 2.15
USP39-201ENST00000323701 FBLN2P98095 1184 aa28.46■■■□□ 2.15
USP39-201ENST00000323701 CHMP7Q8WUX9 453 aaPredicted RBP28.46■■■□□ 2.15
USP39-201ENST00000323701 PCF11O94913 1555 aaKnown RBP28.43■■■□□ 2.14
USP39-201ENST00000323701 CEP170Q5SW79 1584 aa28.4■■■□□ 2.14
USP39-201ENST00000323701 KIAA0586Q9BVV6 1533 aa28.39■■■□□ 2.14
USP39-201ENST00000323701 ATP1B4Q9UN42 357 aaPredicted RBP28.33■■■□□ 2.13
USP39-201ENST00000323701 UGGT2Q9NYU1 1516 aa28.33■■■□□ 2.13
USP39-201ENST00000323701 TIAM1Q13009 1591 aa28.32■■■□□ 2.12
USP39-201ENST00000323701 FMN1Q68DA7 1419 aa28.32■■■□□ 2.12
USP39-201ENST00000323701 CASKIN1Q8WXD9 1431 aa28.32■■■□□ 2.12
USP39-201ENST00000323701 NUP160Q12769 1436 aa28.31■■■□□ 2.12
USP39-201ENST00000323701 FYCO1Q9BQS8 1478 aa28.3■■■□□ 2.12
USP39-201ENST00000323701 HRCP23327 699 aa28.27■■■□□ 2.12
USP39-201ENST00000323701 MAP3K1Q13233 1512 aa28.27■■■□□ 2.12
USP39-201ENST00000323701 DISP1Q96F81 1524 aa28.27■■■□□ 2.12
USP39-201ENST00000323701 CFAP43Q8NDM7 1665 aa28.21■■■□□ 2.11
USP39-201ENST00000323701 LRRC9Q6ZRR7 1453 aa28.21■■■□□ 2.11
USP39-201ENST00000323701 KIAA0556O60303 1618 aa28.2■■■□□ 2.1
USP39-201ENST00000323701 LRRIQ1Q96JM4 1722 aa28.2■■■□□ 2.1
USP39-201ENST00000323701 CHD1O14646 1710 aa28.19■■■□□ 2.1
USP39-201ENST00000323701 JPH4Q96JJ6 628 aa28.15■■■□□ 2.1
USP39-201ENST00000323701 HNRNPUL2Q1KMD3 747 aaKnown RBP28.09■■■□□ 2.09
USP39-201ENST00000323701 RRBP1Q9P2E9 1410 aaKnown RBP28.05■■■□□ 2.08
USP39-201ENST00000323701 PHLDB1Q86UU1 1377 aa28.05■■■□□ 2.08
USP39-201ENST00000323701 ARID3CA6NKF2 412 aa28.03■■■□□ 2.08
USP39-201ENST00000323701 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.01■■■□□ 2.07
USP39-201ENST00000323701 HECW1Q76N89 1606 aa28.01■■■□□ 2.07
USP39-201ENST00000323701 EPRSP07814 1512 aaKnown RBP27.99■■■□□ 2.07
USP39-201ENST00000323701 MAGI3Q5TCQ9 1506 aa27.99■■■□□ 2.07
USP39-201ENST00000323701 CDK13Q14004 1512 aaKnown RBP27.99■■■□□ 2.07
USP39-201ENST00000323701 CARMIL2Q6F5E8 1435 aa27.98■■■□□ 2.07
USP39-201ENST00000323701 CCNB3Q8WWL7 1395 aa27.97■■■□□ 2.07
USP39-201ENST00000323701 MTUS2Q5JR59 1369 aa27.96■■■□□ 2.07
USP39-201ENST00000323701 PRG4Q92954 1404 aaPredicted RBP27.95■■■□□ 2.06
USP39-201ENST00000323701 PLB1Q6P1J6 1458 aa27.95■■■□□ 2.06
USP39-201ENST00000323701 NUP153P49790 1475 aaKnown RBP27.94■■■□□ 2.06
USP39-201ENST00000323701 CCDC18Q5T9S5 1454 aa27.94■■■□□ 2.06
USP39-201ENST00000323701 RAPGEF6Q8TEU7 1601 aa27.93■■■□□ 2.06
USP39-201ENST00000323701 SHROOM2Q13796 1616 aa27.87■■■□□ 2.05
USP39-201ENST00000323701 EHBP1L1Q8N3D4 1523 aa27.85■■■□□ 2.05
USP39-201ENST00000323701 ERCC6L2Q5T890 1561 aa27.85■■■□□ 2.05
USP39-201ENST00000323701 NCOA2Q15596 1464 aa27.85■■■□□ 2.05
USP39-201ENST00000323701 CLASP1Q7Z460 1538 aa27.83■■■□□ 2.05
USP39-201ENST00000323701 ITGAEP38570 1179 aa27.82■■■□□ 2.04
USP39-201ENST00000323701 CCER1Q8TC90 406 aaPredicted RBP27.81■■■□□ 2.04
USP39-201ENST00000323701 SUPT6HQ7KZ85 1726 aaKnown RBP27.79■■■□□ 2.04
USP39-201ENST00000323701 ABCA8O94911 1581 aa27.78■■■□□ 2.04
USP39-201ENST00000323701 FAM50AQ14320 339 aaKnown RBP27.78■■■□□ 2.04
USP39-201ENST00000323701 ARHGEF11O15085 1522 aa27.78■■■□□ 2.04
USP39-201ENST00000323701 PTPRGP23470 1445 aa27.77■■■□□ 2.04
USP39-201ENST00000323701 FGD6Q6ZV73 1430 aa27.76■■■□□ 2.03
USP39-201ENST00000323701 MYOM3Q5VTT5 1437 aa27.72■■■□□ 2.03
USP39-201ENST00000323701 ZEB1P37275 1124 aaPredicted RBP27.67■■■□□ 2.02
USP39-201ENST00000323701 ATP10BO94823 1461 aa27.67■■■□□ 2.02
USP39-201ENST00000323701 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.62■■■□□ 2.011e-6■□□□□ 11
USP39-201ENST00000323701 CDK11AQ9UQ88 783 aaPredicted RBP27.62■■■□□ 2.01
USP39-201ENST00000323701 TROQ12816 1431 aaPredicted RBP27.61■■■□□ 2.01
USP39-201ENST00000323701 UACAQ9BZF9 1416 aa27.59■■■□□ 2.01
USP39-201ENST00000323701 PTPN23Q9H3S7 1636 aa27.58■■■□□ 2.01
USP39-201ENST00000323701 PTPRKQ15262 1439 aa27.57■■■□□ 2
USP39-201ENST00000323701 KIF14Q15058 1648 aa27.57■■■□□ 2
USP39-201ENST00000323701 OSCARQ8IYS5 282 aa27.52■■■□□ 2
USP39-201ENST00000323701 TCOF1Q13428 1488 aaKnown RBP27.51■■□□□ 1.99
USP39-201ENST00000323701 RAB3GAP2Q9H2M9 1393 aa27.5■■□□□ 1.99
USP39-201ENST00000323701 PLEKHD1A6NEE1 506 aa27.5■■□□□ 1.99
USP39-201ENST00000323701 ABCC2Q92887 1545 aa27.49■■□□□ 1.99
USP39-201ENST00000323701 MIA2Q96PC5 1412 aa27.49■■□□□ 1.99
USP39-201ENST00000323701 ADCY10Q96PN6 1610 aa27.49■■□□□ 1.99
USP39-201ENST00000323701 DHX57Q6P158 1386 aaKnown RBP27.47■■□□□ 1.99
USP39-201ENST00000323701 ZNF644Q9H582 1327 aaPredicted RBP27.47■■□□□ 1.99
USP39-201ENST00000323701 SETD5Q9C0A6 1442 aa27.47■■□□□ 1.99
USP39-201ENST00000323701 GPATCH8Q9UKJ3 1502 aaKnown RBP27.43■■□□□ 1.98
USP39-201ENST00000323701 ABCC10Q5T3U5 1492 aa27.41■■□□□ 1.98
USP39-201ENST00000323701 UHRF1BP1LA0JNW5 1464 aa27.37■■□□□ 1.97
USP39-201ENST00000323701 CHIC2Q9UKJ5 165 aa27.36■■□□□ 1.97
USP39-201ENST00000323701 CFDP1Q9UEE9 299 aaPredicted RBP27.36■■□□□ 1.97
USP39-201ENST00000323701 CDC42BPAQ5VT25 1732 aa27.34■■□□□ 1.97
USP39-201ENST00000323701 ZCCHC11Q5TAX3 1644 aaKnown RBP27.33■■□□□ 1.97
USP39-201ENST00000323701 HFM1A2PYH4 1435 aa27.33■■□□□ 1.97
USP39-201ENST00000323701 KDM5BQ9UGL1 1544 aa27.32■■□□□ 1.96
USP39-201ENST00000323701 ITSN2Q9NZM3 1697 aa27.32■■□□□ 1.96
USP39-201ENST00000323701 NAIPQ13075 1403 aa27.31■■□□□ 1.96
USP39-201ENST00000323701 CAMSAP2Q08AD1 1489 aa27.31■■□□□ 1.96
USP39-201ENST00000323701 ZNF777Q9ULD5 760 aaPredicted RBP27.31■■□□□ 1.96
USP39-201ENST00000323701 RRP7BPQ9NSQ0 103 aa27.29■■□□□ 1.96
USP39-201ENST00000323701 ABCC5O15440 1437 aa27.29■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms