RNA–Protein interactions for RNA: ENST00000320876.10

SMCHD1-201, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SMCHD1, Length 8,821 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-201ENST00000320876 CHGAP10645 457 aaKnown RBP22.07■■□□□ 1.12
SMCHD1-201ENST00000320876 MIER1Q8N108 512 aa22.05■■□□□ 1.12
SMCHD1-201ENST00000320876 SCRIBQ14160 1630 aa22.02■■□□□ 1.12
SMCHD1-201ENST00000320876 CHAF1AQ13111 956 aaPredicted RBP22.02■■□□□ 1.12
SMCHD1-201ENST00000320876 ABCC9O60706 1549 aa22■■□□□ 1.11
SMCHD1-201ENST00000320876 NOP58Q9Y2X3 529 aaKnown RBP22■■□□□ 1.11
SMCHD1-201ENST00000320876 PABPN1Q86U42 306 aaKnown RBP eCLIP21.98■■□□□ 1.11
SMCHD1-201ENST00000320876 NRDCO43847 1150 aa21.97■■□□□ 1.11
SMCHD1-201ENST00000320876 FTSJ3Q8IY81 847 aaKnown RBP21.96■■□□□ 1.11
SMCHD1-201ENST00000320876 EIF4G2P78344 907 aaKnown RBP eCLIP21.95■■□□□ 1.1
SMCHD1-201ENST00000320876 RTN4Q9NQC3 1192 aaKnown RBP21.93■■□□□ 1.1
SMCHD1-201ENST00000320876 MSNP26038 577 aaKnown RBP21.88■■□□□ 1.09
SMCHD1-201ENST00000320876 LAS1LQ9Y4W2 734 aaKnown RBP21.87■■□□□ 1.09
SMCHD1-201ENST00000320876 L1TD1Q5T7N2 865 aaKnown RBP21.87■■□□□ 1.09
SMCHD1-201ENST00000320876 KDM2AQ9Y2K7 1162 aa21.87■■□□□ 1.09
SMCHD1-201ENST00000320876 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.86■■□□□ 1.094e-9■□□□□ 8.9
SMCHD1-201ENST00000320876 MTUS2Q5JR59 1369 aa21.84■■□□□ 1.09
SMCHD1-201ENST00000320876 HSP90AB1P08238 724 aaKnown RBP21.83■■□□□ 1.09
SMCHD1-201ENST00000320876 CHIC2Q9UKJ5 165 aa21.82■■□□□ 1.08
SMCHD1-201ENST00000320876 CFAP53Q96M91 514 aa21.81■■□□□ 1.08
SMCHD1-201ENST00000320876 TPRNQ4KMQ1 711 aa21.81■■□□□ 1.08
SMCHD1-201ENST00000320876 CHMP4BQ9H444 224 aaKnown RBP21.81■■□□□ 1.08
SMCHD1-201ENST00000320876 PPP4R2Q9NY27 417 aa21.81■■□□□ 1.08
SMCHD1-201ENST00000320876 SUPT16HQ9Y5B9 1047 aaKnown RBP21.8■■□□□ 1.08
SMCHD1-201ENST00000320876 PLCB2Q00722 1185 aa21.8■■□□□ 1.08
SMCHD1-201ENST00000320876 CDCA8Q53HL2 280 aa21.77■■□□□ 1.08
SMCHD1-201ENST00000320876 TSPY4P0CV99 314 aa21.76■■□□□ 1.07
SMCHD1-201ENST00000320876 TSPY10P0CW01 314 aa21.76■■□□□ 1.07
SMCHD1-201ENST00000320876 KNSTRNQ9Y448 316 aa21.76■■□□□ 1.07
SMCHD1-201ENST00000320876 CLIP1P30622 1438 aa21.75■■□□□ 1.07
SMCHD1-201ENST00000320876 HSCBQ8IWL3 235 aa21.74■■□□□ 1.07
SMCHD1-201ENST00000320876 HIRIP3Q9BW71 556 aaPredicted RBP21.72■■□□□ 1.07
SMCHD1-201ENST00000320876 MS4A1P11836 297 aa21.7■■□□□ 1.06
SMCHD1-201ENST00000320876 DEKP35659 375 aaKnown RBP21.69■■□□□ 1.06
SMCHD1-201ENST00000320876 RSF1Q96T23 1441 aaPredicted RBP21.68■■□□□ 1.06
SMCHD1-201ENST00000320876 PTMSP20962 102 aa21.68■■□□□ 1.06
SMCHD1-201ENST00000320876 GOLGA6L4A6NEF3 574 aa21.68■■□□□ 1.06
SMCHD1-201ENST00000320876 NPM1P06748 294 aaKnown RBP eCLIP21.68■■□□□ 1.06
SMCHD1-201ENST00000320876 RGS3P49796 1198 aa21.67■■□□□ 1.06
SMCHD1-201ENST00000320876 DRC7Q8IY82 874 aa21.67■■□□□ 1.06
SMCHD1-201ENST00000320876 A0A0G2JS52 829 aa21.67■■□□□ 1.06
SMCHD1-201ENST00000320876 FGD1P98174 961 aa21.67■■□□□ 1.06
SMCHD1-201ENST00000320876 PLPPR3Q6T4P5 718 aa21.66■■□□□ 1.06
SMCHD1-201ENST00000320876 TULP1O00294 542 aaPredicted RBP21.63■■□□□ 1.05
SMCHD1-201ENST00000320876 CFAP44Q96MT7 982 aa21.63■■□□□ 1.05
SMCHD1-201ENST00000320876 MAPK8IP3Q9UPT6 1336 aa21.63■■□□□ 1.05
SMCHD1-201ENST00000320876 GOLGA3Q08378 1498 aa21.61■■□□□ 1.05
SMCHD1-201ENST00000320876 AMER1Q5JTC6 1135 aaPredicted RBP21.61■■□□□ 1.05
SMCHD1-201ENST00000320876 C14orf37Q86TY3 774 aa21.61■■□□□ 1.05
SMCHD1-201ENST00000320876 MCCP23508 829 aa21.61■■□□□ 1.05
SMCHD1-201ENST00000320876 KCNJ4P48050 445 aa21.6■■□□□ 1.05
SMCHD1-201ENST00000320876 ZBTB7CA1YPR0 619 aa21.57■■□□□ 1.04
SMCHD1-201ENST00000320876 KIAA2012Q0VF49 1180 aa21.56■■□□□ 1.04
SMCHD1-201ENST00000320876 PPP1R15AO75807 674 aaPredicted RBP21.56■■□□□ 1.04
SMCHD1-201ENST00000320876 ZCCHC6Q5VYS8 1495 aaKnown RBP21.55■■□□□ 1.04
SMCHD1-201ENST00000320876 OS9Q13438 667 aaPredicted RBP21.55■■□□□ 1.04
SMCHD1-201ENST00000320876 PNNQ9H307 717 aaKnown RBP21.54■■□□□ 1.04
SMCHD1-201ENST00000320876 FRAT1Q92837 279 aaPredicted RBP21.54■■□□□ 1.04
SMCHD1-201ENST00000320876 TNNT3P45378 269 aaPredicted RBP21.53■■□□□ 1.04
SMCHD1-201ENST00000320876 NUDCQ9Y266 331 aa21.53■■□□□ 1.04
SMCHD1-201ENST00000320876 EEA1Q15075 1411 aa21.52■■□□□ 1.04
SMCHD1-201ENST00000320876 GBP4Q96PP9 640 aa21.52■■□□□ 1.04
SMCHD1-201ENST00000320876 CEP162Q5TB80 1403 aa21.52■■□□□ 1.04
SMCHD1-201ENST00000320876 RRP7BPQ9NSQ0 103 aa21.52■■□□□ 1.04
SMCHD1-201ENST00000320876 NAP1L2Q9ULW6 460 aaPredicted RBP21.51■■□□□ 1.03
SMCHD1-201ENST00000320876 B4GALNT3Q6L9W6 998 aa21.49■■□□□ 1.03
SMCHD1-201ENST00000320876 SYAP1Q96A49 352 aaPredicted RBP21.48■■□□□ 1.03
SMCHD1-201ENST00000320876 NOC3LQ8WTT2 800 aaKnown RBP21.48■■□□□ 1.03
SMCHD1-201ENST00000320876 CARD11Q9BXL7 1154 aa21.47■■□□□ 1.03
SMCHD1-201ENST00000320876 ARID4BQ4LE39 1312 aaPredicted RBP21.47■■□□□ 1.03
SMCHD1-201ENST00000320876 TAOK2Q9UL54 1235 aa21.46■■□□□ 1.03
SMCHD1-201ENST00000320876 GOLGA2Q08379 1002 aa21.44■■□□□ 1.02
SMCHD1-201ENST00000320876 NEUROD2Q15784 382 aa21.44■■□□□ 1.02
SMCHD1-201ENST00000320876 GOLGA6L1Q8N7Z2 621 aa21.44■■□□□ 1.02
SMCHD1-201ENST00000320876 GNL2Q13823 731 aaKnown RBP21.43■■□□□ 1.02
SMCHD1-201ENST00000320876 RBM19Q9Y4C8 960 aaKnown RBP21.42■■□□□ 1.02
SMCHD1-201ENST00000320876 USP35Q9P2H5 1018 aa21.41■■□□□ 1.02
SMCHD1-201ENST00000320876 SPRYD3Q8NCJ5 442 aa21.39■■□□□ 1.01
SMCHD1-201ENST00000320876 SENP3-EIF4A1A0A087X0R7 540 aa21.38■■□□□ 1.01
SMCHD1-201ENST00000320876 CLSTN1O94985 981 aa21.37■■□□□ 1.01
SMCHD1-201ENST00000320876 HTATSF1O43719 755 aaKnown RBP21.37■■□□□ 1.01
SMCHD1-201ENST00000320876 MYO15BQ96JP2 1530 aa21.36■■□□□ 1.01
SMCHD1-201ENST00000320876 RGL3Q3MIN7 710 aa21.36■■□□□ 1.01
SMCHD1-201ENST00000320876 HAP1P54257 671 aaPredicted RBP21.36■■□□□ 1.01
SMCHD1-201ENST00000320876 NPHP1O15259 732 aa21.35■■□□□ 1.01
SMCHD1-201ENST00000320876 TPM4P67936 248 aa21.35■■□□□ 1.01
SMCHD1-201ENST00000320876 ZBTB4Q9P1Z0 1013 aaPredicted RBP21.35■■□□□ 1.01
SMCHD1-201ENST00000320876 PLEKHG5O94827 1062 aa21.34■■□□□ 1.01
SMCHD1-201ENST00000320876 KIAA1211Q6ZU35 1233 aa21.34■■□□□ 1.01
SMCHD1-201ENST00000320876 ARID3AQ99856 593 aa21.33■■□□□ 1.01
SMCHD1-201ENST00000320876 GOLGA6L3A6NEY3 463 aa21.32■■□□□ 1
SMCHD1-201ENST00000320876 CEP164Q9UPV0 1460 aa21.32■■□□□ 1
SMCHD1-201ENST00000320876 CC2D1BQ5T0F9 858 aaKnown RBP21.32■■□□□ 1
SMCHD1-201ENST00000320876 PHF14O94880 888 aa21.31■■□□□ 1
SMCHD1-201ENST00000320876 CCER2I3L3R5 266 aa21.3■■□□□ 1
SMCHD1-201ENST00000320876 GZF1Q9H116 711 aaPredicted RBP21.3■■□□□ 1
SMCHD1-201ENST00000320876 SETQ01105 290 aaPredicted RBP21.28■■□□□ 1
SMCHD1-201ENST00000320876 CHMP7Q8WUX9 453 aaPredicted RBP21.27■■□□□ 1
SMCHD1-201ENST00000320876 RSPH6AQ9H0K4 717 aa21.27■■□□□ 1
SMCHD1-201ENST00000320876 CSPP1Q1MSJ5 1256 aa21.27■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms