RNA–Protein interactions for RNA: ENST00000315286.12

CCDC43-201, Transcript of coiled-coil domain containing 43, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CCDC43, Length 2,082 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC43-201ENST00000315286 PBRM1Q86U86 1689 aa28■■■□□ 2.07
CCDC43-201ENST00000315286 P3H3Q8IVL6 736 aa27.98■■■□□ 2.07
CCDC43-201ENST00000315286 IFT140Q96RY7 1462 aa27.98■■■□□ 2.07
CCDC43-201ENST00000315286 EFCAB5A4FU69 1503 aa27.94■■■□□ 2.06
CCDC43-201ENST00000315286 ZNF608Q9ULD9 1512 aaPredicted RBP27.93■■■□□ 2.06
CCDC43-201ENST00000315286 CCER1Q8TC90 406 aaPredicted RBP27.91■■■□□ 2.06
CCDC43-201ENST00000315286 FHAD1B1AJZ9 1412 aa27.91■■■□□ 2.06
CCDC43-201ENST00000315286 FHOD3Q2V2M9 1422 aa27.91■■■□□ 2.06
CCDC43-201ENST00000315286 GRIN2BQ13224 1484 aa27.9■■■□□ 2.06
CCDC43-201ENST00000315286 THOC2Q8NI27 1593 aaKnown RBP27.9■■■□□ 2.06
CCDC43-201ENST00000315286 HNRNPUL2Q1KMD3 747 aaKnown RBP27.87■■■□□ 2.05
CCDC43-201ENST00000315286 ADAMTS12P58397 1594 aa27.87■■■□□ 2.05
CCDC43-201ENST00000315286 MAP3K1Q13233 1512 aa27.86■■■□□ 2.05
CCDC43-201ENST00000315286 TIAM1Q13009 1591 aa27.85■■■□□ 2.05
CCDC43-201ENST00000315286 PCF11O94913 1555 aaKnown RBP27.84■■■□□ 2.05
CCDC43-201ENST00000315286 SAMD9Q5K651 1589 aa27.8■■■□□ 2.04
CCDC43-201ENST00000315286 EIF4G3O43432 1585 aaKnown RBP27.76■■■□□ 2.03
CCDC43-201ENST00000315286 ATP1B4Q9UN42 357 aaPredicted RBP27.75■■■□□ 2.03
CCDC43-201ENST00000315286 CASKIN1Q8WXD9 1431 aa27.75■■■□□ 2.03
CCDC43-201ENST00000315286 FYCO1Q9BQS8 1478 aa27.75■■■□□ 2.03
CCDC43-201ENST00000315286 FMN1Q68DA7 1419 aa27.74■■■□□ 2.03
CCDC43-201ENST00000315286 RRBP1Q9P2E9 1410 aaKnown RBP27.74■■■□□ 2.03
CCDC43-201ENST00000315286 LRRC9Q6ZRR7 1453 aa27.74■■■□□ 2.03
CCDC43-201ENST00000315286 CFAP43Q8NDM7 1665 aa27.72■■■□□ 2.03
CCDC43-201ENST00000315286 SNAPC4Q5SXM2 1469 aa27.7■■■□□ 2.03
CCDC43-201ENST00000315286 IQGAP2Q13576 1575 aa27.68■■■□□ 2.02
CCDC43-201ENST00000315286 CCNB3Q8WWL7 1395 aa27.64■■■□□ 2.02
CCDC43-201ENST00000315286 GRIN2AQ12879 1464 aa27.59■■■□□ 2.01
CCDC43-201ENST00000315286 MAGI1Q96QZ7 1491 aaPredicted RBP27.58■■■□□ 2.01
CCDC43-201ENST00000315286 PHLDB1Q86UU1 1377 aa27.56■■■□□ 2
CCDC43-201ENST00000315286 KIAA0586Q9BVV6 1533 aa27.54■■■□□ 2
CCDC43-201ENST00000315286 LRRIQ1Q96JM4 1722 aa27.54■■■□□ 2
CCDC43-201ENST00000315286 UGGT2Q9NYU1 1516 aa27.53■■■□□ 2
CCDC43-201ENST00000315286 SYNJ2O15056 1496 aa27.5■■□□□ 1.99
CCDC43-201ENST00000315286 CHMP7Q8WUX9 453 aaPredicted RBP27.5■■□□□ 1.99
CCDC43-201ENST00000315286 ITGAEP38570 1179 aa27.45■■□□□ 1.98
CCDC43-201ENST00000315286 FBLN2P98095 1184 aa27.44■■□□□ 1.98
CCDC43-201ENST00000315286 MTUS2Q5JR59 1369 aa27.43■■□□□ 1.98
CCDC43-201ENST00000315286 CEP170Q5SW79 1584 aa27.42■■□□□ 1.98
CCDC43-201ENST00000315286 DISP1Q96F81 1524 aa27.41■■□□□ 1.98
CCDC43-201ENST00000315286 KIAA0556O60303 1618 aa27.39■■□□□ 1.98
CCDC43-201ENST00000315286 HECW1Q76N89 1606 aa27.37■■□□□ 1.97
CCDC43-201ENST00000315286 FAM50AQ14320 339 aaKnown RBP27.37■■□□□ 1.97
CCDC43-201ENST00000315286 CCDC18Q5T9S5 1454 aa27.36■■□□□ 1.97
CCDC43-201ENST00000315286 NUP160Q12769 1436 aa27.34■■□□□ 1.97
CCDC43-201ENST00000315286 EPRSP07814 1512 aaKnown RBP27.31■■□□□ 1.96
CCDC43-201ENST00000315286 DHX57Q6P158 1386 aaKnown RBP27.31■■□□□ 1.96
CCDC43-201ENST00000315286 EHBP1L1Q8N3D4 1523 aa27.31■■□□□ 1.96
CCDC43-201ENST00000315286 MAGI3Q5TCQ9 1506 aa27.3■■□□□ 1.96
CCDC43-201ENST00000315286 NCOA2Q15596 1464 aa27.3■■□□□ 1.96
CCDC43-201ENST00000315286 SUPT6HQ7KZ85 1726 aaKnown RBP27.29■■□□□ 1.96
CCDC43-201ENST00000315286 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.28■■□□□ 1.96
CCDC43-201ENST00000315286 FGD6Q6ZV73 1430 aa27.28■■□□□ 1.96
CCDC43-201ENST00000315286 CDK13Q14004 1512 aaKnown RBP27.26■■□□□ 1.95
CCDC43-201ENST00000315286 JPH4Q96JJ6 628 aa27.25■■□□□ 1.95
CCDC43-201ENST00000315286 ARID3CA6NKF2 412 aa27.23■■□□□ 1.95
CCDC43-201ENST00000315286 RAB3GAP2Q9H2M9 1393 aa27.22■■□□□ 1.95
CCDC43-201ENST00000315286 CLSPNQ9HAW4 1339 aa27.22■■□□□ 1.95
CCDC43-201ENST00000315286 MYOM3Q5VTT5 1437 aa27.21■■□□□ 1.95
CCDC43-201ENST00000315286 ARHGEF11O15085 1522 aa27.21■■□□□ 1.95
CCDC43-201ENST00000315286 SETD5Q9C0A6 1442 aa27.2■■□□□ 1.94
CCDC43-201ENST00000315286 RAPGEF6Q8TEU7 1601 aa27.19■■□□□ 1.94
CCDC43-201ENST00000315286 NUP153P49790 1475 aaKnown RBP27.17■■□□□ 1.94
CCDC43-201ENST00000315286 CARMIL2Q6F5E8 1435 aa27.17■■□□□ 1.94
CCDC43-201ENST00000315286 PLB1Q6P1J6 1458 aa27.1■■□□□ 1.93
CCDC43-201ENST00000315286 CHD1O14646 1710 aa27.1■■□□□ 1.93
CCDC43-201ENST00000315286 PTPN23Q9H3S7 1636 aa27.09■■□□□ 1.93
CCDC43-201ENST00000315286 PTPRKQ15262 1439 aa27.07■■□□□ 1.92
CCDC43-201ENST00000315286 CDK11AQ9UQ88 783 aaPredicted RBP27.02■■□□□ 1.92
CCDC43-201ENST00000315286 TCOF1Q13428 1488 aaKnown RBP27.01■■□□□ 1.92
CCDC43-201ENST00000315286 PRG4Q92954 1404 aaPredicted RBP26.99■■□□□ 1.91
CCDC43-201ENST00000315286 MIA2Q96PC5 1412 aa26.98■■□□□ 1.91
CCDC43-201ENST00000315286 MAPKBP1O60336 1514 aa26.98■■□□□ 1.91
CCDC43-201ENST00000315286 ZNF316A6NFI3 1004 aaPredicted RBP26.96■■□□□ 1.91
CCDC43-201ENST00000315286 ABCA8O94911 1581 aa26.96■■□□□ 1.91
CCDC43-201ENST00000315286 HFM1A2PYH4 1435 aa26.94■■□□□ 1.9
CCDC43-201ENST00000315286 TROQ12816 1431 aaPredicted RBP26.93■■□□□ 1.9
CCDC43-201ENST00000315286 NAIPQ13075 1403 aa26.9■■□□□ 1.9
CCDC43-201ENST00000315286 PTPRGP23470 1445 aa26.88■■□□□ 1.89
CCDC43-201ENST00000315286 SHROOM2Q13796 1616 aa26.88■■□□□ 1.89
CCDC43-201ENST00000315286 DIEXFQ68CQ4 756 aaKnown RBP26.87■■□□□ 1.89
CCDC43-201ENST00000315286 ATP10BO94823 1461 aa26.85■■□□□ 1.89
CCDC43-201ENST00000315286 CHIC2Q9UKJ5 165 aa26.85■■□□□ 1.89
CCDC43-201ENST00000315286 KIF14Q15058 1648 aa26.83■■□□□ 1.89
CCDC43-201ENST00000315286 ADCY10Q96PN6 1610 aa26.83■■□□□ 1.89
CCDC43-201ENST00000315286 RRP7BPQ9NSQ0 103 aa26.81■■□□□ 1.88
CCDC43-201ENST00000315286 ZNF644Q9H582 1327 aaPredicted RBP26.81■■□□□ 1.88
CCDC43-201ENST00000315286 PLEKHD1A6NEE1 506 aa26.8■■□□□ 1.88
CCDC43-201ENST00000315286 UACAQ9BZF9 1416 aa26.77■■□□□ 1.88
CCDC43-201ENST00000315286 SIN3AQ96ST3 1273 aa26.77■■□□□ 1.88
CCDC43-201ENST00000315286 GPATCH8Q9UKJ3 1502 aaKnown RBP26.77■■□□□ 1.88
CCDC43-201ENST00000315286 ERCC6L2Q5T890 1561 aa26.76■■□□□ 1.87
CCDC43-201ENST00000315286 GCC2Q8IWJ2 1684 aa26.76■■□□□ 1.87
CCDC43-201ENST00000315286 AKNAQ7Z591 1439 aa26.76■■□□□ 1.87
CCDC43-201ENST00000315286 ITSN2Q9NZM3 1697 aa26.75■■□□□ 1.87
CCDC43-201ENST00000315286 CFDP1Q9UEE9 299 aaPredicted RBP26.75■■□□□ 1.87
CCDC43-201ENST00000315286 DAPK1P53355 1430 aa26.75■■□□□ 1.87
CCDC43-201ENST00000315286 DNMT1P26358 1616 aaKnown RBP26.74■■□□□ 1.87
CCDC43-201ENST00000315286 ABCC5O15440 1437 aa26.73■■□□□ 1.87
CCDC43-201ENST00000315286 CLASP1Q7Z460 1538 aa26.73■■□□□ 1.87
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms