RNA–Protein interactions for RNA: ENST00000308508.5

CSPG4-201, Transcript of chondroitin sulfate proteoglycan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CSPG4, Length 8,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4-201ENST00000308508 RTN4Q9NQC3 1192 aaKnown RBP18.15■□□□□ 0.5
CSPG4-201ENST00000308508 ARID3CA6NKF2 412 aa18.14■□□□□ 0.49
CSPG4-201ENST00000308508 CHAF1AQ13111 956 aaPredicted RBP18.13■□□□□ 0.49
CSPG4-201ENST00000308508 NOP58Q9Y2X3 529 aaKnown RBP18.12■□□□□ 0.49
CSPG4-201ENST00000308508 NRDCO43847 1150 aa18.11■□□□□ 0.49
CSPG4-201ENST00000308508 MSNP26038 577 aaKnown RBP18.04■□□□□ 0.48
CSPG4-201ENST00000308508 LAS1LQ9Y4W2 734 aaKnown RBP18.04■□□□□ 0.48
CSPG4-201ENST00000308508 L1TD1Q5T7N2 865 aaKnown RBP18.03■□□□□ 0.48
CSPG4-201ENST00000308508 EIF4G2P78344 907 aaKnown RBP eCLIP18.02■□□□□ 0.48
CSPG4-201ENST00000308508 PLCB2Q00722 1185 aa18.02■□□□□ 0.47
CSPG4-201ENST00000308508 FTSJ3Q8IY81 847 aaKnown RBP18.01■□□□□ 0.47
CSPG4-201ENST00000308508 TPRNQ4KMQ1 711 aa17.98■□□□□ 0.47
CSPG4-201ENST00000308508 HSP90AB1P08238 724 aaKnown RBP17.98■□□□□ 0.47
CSPG4-201ENST00000308508 PPP4R2Q9NY27 417 aa17.97■□□□□ 0.47
CSPG4-201ENST00000308508 SUPT16HQ9Y5B9 1047 aaKnown RBP17.96■□□□□ 0.47
CSPG4-201ENST00000308508 KDM2AQ9Y2K7 1162 aa17.95■□□□□ 0.46
CSPG4-201ENST00000308508 DEKP35659 375 aaKnown RBP17.92■□□□□ 0.46
CSPG4-201ENST00000308508 AMER1Q5JTC6 1135 aaPredicted RBP17.92■□□□□ 0.46
CSPG4-201ENST00000308508 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.92■□□□□ 0.46
CSPG4-201ENST00000308508 CHMP4BQ9H444 224 aaKnown RBP17.91■□□□□ 0.46
CSPG4-201ENST00000308508 CFAP53Q96M91 514 aa17.91■□□□□ 0.46
CSPG4-201ENST00000308508 CCDC180Q9P1Z9 1646 aa17.89■□□□□ 0.45
CSPG4-201ENST00000308508 CHIC2Q9UKJ5 165 aa17.89■□□□□ 0.45
CSPG4-201ENST00000308508 PABPN1Q86U42 306 aaKnown RBP eCLIP17.88■□□□□ 0.45
CSPG4-201ENST00000308508 HSCBQ8IWL3 235 aa17.88■□□□□ 0.45
CSPG4-201ENST00000308508 GOLGA6L4A6NEF3 574 aa17.86■□□□□ 0.45
CSPG4-201ENST00000308508 HIRIP3Q9BW71 556 aaPredicted RBP17.86■□□□□ 0.45
CSPG4-201ENST00000308508 DRC7Q8IY82 874 aa17.85■□□□□ 0.45
CSPG4-201ENST00000308508 TULP1O00294 542 aaPredicted RBP17.85■□□□□ 0.45
CSPG4-201ENST00000308508 RGS3P49796 1198 aa17.85■□□□□ 0.45
CSPG4-201ENST00000308508 TSPY4P0CV99 314 aa17.84■□□□□ 0.45
CSPG4-201ENST00000308508 TSPY10P0CW01 314 aa17.84■□□□□ 0.45
CSPG4-201ENST00000308508 MS4A1P11836 297 aa17.84■□□□□ 0.45
CSPG4-201ENST00000308508 CDCA8Q53HL2 280 aa17.84■□□□□ 0.45
CSPG4-201ENST00000308508 PTMSP20962 102 aa17.84■□□□□ 0.45
CSPG4-201ENST00000308508 FGD1P98174 961 aa17.83■□□□□ 0.44
CSPG4-201ENST00000308508 TNNT3P45378 269 aaPredicted RBP17.83■□□□□ 0.44
CSPG4-201ENST00000308508 KNSTRNQ9Y448 316 aa17.82■□□□□ 0.44
CSPG4-201ENST00000308508 MTUS2Q5JR59 1369 aa17.8■□□□□ 0.44
CSPG4-201ENST00000308508 A0A0G2JS52 829 aa17.8■□□□□ 0.44
CSPG4-201ENST00000308508 CFAP44Q96MT7 982 aa17.79■□□□□ 0.44
CSPG4-201ENST00000308508 KIAA2012Q0VF49 1180 aa17.78■□□□□ 0.44
CSPG4-201ENST00000308508 KCNJ4P48050 445 aa17.77■□□□□ 0.44
CSPG4-201ENST00000308508 MCCP23508 829 aa17.76■□□□□ 0.43
CSPG4-201ENST00000308508 PLPPR3Q6T4P5 718 aa17.76■□□□□ 0.43
CSPG4-201ENST00000308508 NPM1P06748 294 aaKnown RBP eCLIP17.75■□□□□ 0.43
CSPG4-201ENST00000308508 MAPK8IP3Q9UPT6 1336 aa17.75■□□□□ 0.43
CSPG4-201ENST00000308508 ARID4BQ4LE39 1312 aaPredicted RBP17.75■□□□□ 0.43
CSPG4-201ENST00000308508 PNNQ9H307 717 aaKnown RBP17.74■□□□□ 0.43
CSPG4-201ENST00000308508 ZBTB7CA1YPR0 619 aa17.72■□□□□ 0.43
CSPG4-201ENST00000308508 C14orf37Q86TY3 774 aa17.72■□□□□ 0.43
CSPG4-201ENST00000308508 GBP4Q96PP9 640 aa17.71■□□□□ 0.43
CSPG4-201ENST00000308508 FRAT1Q92837 279 aaPredicted RBP17.71■□□□□ 0.43
CSPG4-201ENST00000308508 NAP1L2Q9ULW6 460 aaPredicted RBP17.71■□□□□ 0.43
CSPG4-201ENST00000308508 OS9Q13438 667 aaPredicted RBP17.71■□□□□ 0.43
CSPG4-201ENST00000308508 ABCC9O60706 1549 aa17.71■□□□□ 0.43
CSPG4-201ENST00000308508 B4GALNT3Q6L9W6 998 aa17.7■□□□□ 0.42
CSPG4-201ENST00000308508 NUDCQ9Y266 331 aa17.69■□□□□ 0.42
CSPG4-201ENST00000308508 TAOK2Q9UL54 1235 aa17.68■□□□□ 0.42
CSPG4-201ENST00000308508 NOC3LQ8WTT2 800 aaKnown RBP17.68■□□□□ 0.42
CSPG4-201ENST00000308508 GOLGA6L1Q8N7Z2 621 aa17.67■□□□□ 0.42
CSPG4-201ENST00000308508 RBM19Q9Y4C8 960 aaKnown RBP17.67■□□□□ 0.42
CSPG4-201ENST00000308508 SYAP1Q96A49 352 aaPredicted RBP17.66■□□□□ 0.42
CSPG4-201ENST00000308508 CLIP1P30622 1438 aa17.65■□□□□ 0.42
CSPG4-201ENST00000308508 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.65■□□□□ 0.42
CSPG4-201ENST00000308508 USP35Q9P2H5 1018 aa17.65■□□□□ 0.42
CSPG4-201ENST00000308508 PPP1R15AO75807 674 aaPredicted RBP17.64■□□□□ 0.41
CSPG4-201ENST00000308508 NEUROD2Q15784 382 aa17.64■□□□□ 0.41
CSPG4-201ENST00000308508 RSF1Q96T23 1441 aaPredicted RBP17.64■□□□□ 0.41
CSPG4-201ENST00000308508 ARID3AQ99856 593 aa17.62■□□□□ 0.41
CSPG4-201ENST00000308508 RRP7BPQ9NSQ0 103 aa17.62■□□□□ 0.41
CSPG4-201ENST00000308508 SPRYD3Q8NCJ5 442 aa17.62■□□□□ 0.41
CSPG4-201ENST00000308508 SENP3-EIF4A1A0A087X0R7 540 aa17.61■□□□□ 0.41
CSPG4-201ENST00000308508 CARD11Q9BXL7 1154 aa17.61■□□□□ 0.41
CSPG4-201ENST00000308508 GNL2Q13823 731 aaKnown RBP17.6■□□□□ 0.41
CSPG4-201ENST00000308508 GOLGA2Q08379 1002 aa17.6■□□□□ 0.41
CSPG4-201ENST00000308508 HTATSF1O43719 755 aaKnown RBP17.59■□□□□ 0.41
CSPG4-201ENST00000308508 TPM4P67936 248 aa17.58■□□□□ 0.41
CSPG4-201ENST00000308508 GOLGA6L3A6NEY3 463 aa17.58■□□□□ 0.41
CSPG4-201ENST00000308508 CLSTN1O94985 981 aa17.58■□□□□ 0.4
CSPG4-201ENST00000308508 HSP90AA2PQ14568 343 aaPredicted RBP17.56■□□□□ 0.4
CSPG4-201ENST00000308508 SETQ01105 290 aaPredicted RBP17.56■□□□□ 0.4
CSPG4-201ENST00000308508 GZF1Q9H116 711 aaPredicted RBP17.55■□□□□ 0.4
CSPG4-201ENST00000308508 RGL3Q3MIN7 710 aa17.54■□□□□ 0.4
CSPG4-201ENST00000308508 RSPH6AQ9H0K4 717 aa17.54■□□□□ 0.4
CSPG4-201ENST00000308508 PLEKHG5O94827 1062 aa17.54■□□□□ 0.4
CSPG4-201ENST00000308508 KIAA1211Q6ZU35 1233 aa17.53■□□□□ 0.4
CSPG4-201ENST00000308508 A0A0U1RQG5 324 aaPredicted RBP17.53■□□□□ 0.4
CSPG4-201ENST00000308508 HAP1P54257 671 aaPredicted RBP17.52■□□□□ 0.4
CSPG4-201ENST00000308508 SCRIBQ14160 1630 aa17.52■□□□□ 0.39
CSPG4-201ENST00000308508 NPHP1O15259 732 aa17.51■□□□□ 0.39
CSPG4-201ENST00000308508 TCERG1O14776 1098 aaKnown RBP17.5■□□□□ 0.39
CSPG4-201ENST00000308508 GOLGA3Q08378 1498 aa17.5■□□□□ 0.39
CSPG4-201ENST00000308508 CCER2I3L3R5 266 aa17.49■□□□□ 0.39
CSPG4-201ENST00000308508 PHF14O94880 888 aa17.49■□□□□ 0.39
CSPG4-201ENST00000308508 CSPP1Q1MSJ5 1256 aa17.49■□□□□ 0.39
CSPG4-201ENST00000308508 CC2D1BQ5T0F9 858 aaKnown RBP17.49■□□□□ 0.39
CSPG4-201ENST00000308508 CCDC34Q96HJ3 373 aa17.48■□□□□ 0.39
CSPG4-201ENST00000308508 ZCCHC6Q5VYS8 1495 aaKnown RBP17.48■□□□□ 0.39
CSPG4-201ENST00000308508 NCBP3Q53F19 620 aaKnown RBP17.47■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 92.5 ms