RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 CCNB3Q8WWL7 1395 aa25.92■■□□□ 1.74
USP48-201ENST00000308271 SIN3AQ96ST3 1273 aa25.88■■□□□ 1.73
USP48-201ENST00000308271 ZNF777Q9ULD5 760 aaPredicted RBP25.85■■□□□ 1.73
USP48-201ENST00000308271 SALL2Q9Y467 1007 aaPredicted RBP25.85■■□□□ 1.73
USP48-201ENST00000308271 KIF27Q86VH2 1401 aa25.82■■□□□ 1.72
USP48-201ENST00000308271 MROH2BQ7Z745 1585 aa25.81■■□□□ 1.72
USP48-201ENST00000308271 CCDC88BA6NC98 1476 aa25.81■■□□□ 1.72
USP48-201ENST00000308271 UPF2Q9HAU5 1272 aaKnown RBP25.8■■□□□ 1.72
USP48-201ENST00000308271 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.79■■□□□ 1.72
USP48-201ENST00000308271 NOP58Q9Y2X3 529 aaKnown RBP25.79■■□□□ 1.72
USP48-201ENST00000308271 DDRGK1Q96HY6 314 aa25.77■■□□□ 1.72
USP48-201ENST00000308271 GLIPR1L2Q4G1C9 344 aa25.75■■□□□ 1.71
USP48-201ENST00000308271 RRP7BPQ9NSQ0 103 aa25.73■■□□□ 1.71
USP48-201ENST00000308271 ABCC8Q09428 1581 aa25.73■■□□□ 1.71
USP48-201ENST00000308271 ERICH6BQ5W0A0 696 aa25.73■■□□□ 1.71
USP48-201ENST00000308271 PPM1GO15355 546 aaPredicted RBP25.7■■□□□ 1.7
USP48-201ENST00000308271 SETD5Q9C0A6 1442 aa25.67■■□□□ 1.7
USP48-201ENST00000308271 FBLN2P98095 1184 aa25.66■■□□□ 1.7
USP48-201ENST00000308271 B4GALNT3Q6L9W6 998 aa25.66■■□□□ 1.7
USP48-201ENST00000308271 BAZ1BQ9UIG0 1483 aaKnown RBP25.64■■□□□ 1.7
USP48-201ENST00000308271 ANP32BQ92688 251 aaKnown RBP25.64■■□□□ 1.69
USP48-201ENST00000308271 DEKP35659 375 aaKnown RBP25.63■■□□□ 1.69
USP48-201ENST00000308271 KANK4Q5T7N3 995 aaPredicted RBP25.62■■□□□ 1.69
USP48-201ENST00000308271 WDR43Q15061 677 aaKnown RBP eCLIP25.6■■□□□ 1.69
USP48-201ENST00000308271 FHAD1B1AJZ9 1412 aa25.58■■□□□ 1.69
USP48-201ENST00000308271 RAB3GAP2Q9H2M9 1393 aa25.56■■□□□ 1.68
USP48-201ENST00000308271 NEFMP07197 916 aa25.55■■□□□ 1.68
USP48-201ENST00000308271 KDM2AQ9Y2K7 1162 aa25.55■■□□□ 1.68
USP48-201ENST00000308271 HSP90AA1P07900 732 aaKnown RBP25.54■■□□□ 1.68
USP48-201ENST00000308271 DHX57Q6P158 1386 aaKnown RBP25.54■■□□□ 1.68
USP48-201ENST00000308271 TSPY4P0CV99 314 aa25.49■■□□□ 1.67
USP48-201ENST00000308271 TSPY10P0CW01 314 aa25.49■■□□□ 1.67
USP48-201ENST00000308271 BECN1Q14457 450 aa25.49■■□□□ 1.67
USP48-201ENST00000308271 PPP1R15AO75807 674 aaPredicted RBP25.47■■□□□ 1.67
USP48-201ENST00000308271 WIZO95785 1651 aa25.47■■□□□ 1.67
USP48-201ENST00000308271 LAS1LQ9Y4W2 734 aaKnown RBP25.47■■□□□ 1.67
USP48-201ENST00000308271 TOP2AP11388 1531 aaKnown RBP25.43■■□□□ 1.66
USP48-201ENST00000308271 HSPA5P11021 654 aaKnown RBP25.41■■□□□ 1.66
USP48-201ENST00000308271 ARXQ96QS3 562 aa25.39■■□□□ 1.66
USP48-201ENST00000308271 SENP3-EIF4A1A0A087X0R7 540 aa25.39■■□□□ 1.66
USP48-201ENST00000308271 RTN4Q9NQC3 1192 aaKnown RBP25.38■■□□□ 1.65
USP48-201ENST00000308271 KCNH8Q96L42 1107 aa25.37■■□□□ 1.65
USP48-201ENST00000308271 CARD11Q9BXL7 1154 aa25.36■■□□□ 1.65
USP48-201ENST00000308271 CARMIL1Q5VZK9 1371 aa25.35■■□□□ 1.65
USP48-201ENST00000308271 ARHGAP35Q9NRY4 1499 aa25.34■■□□□ 1.65
USP48-201ENST00000308271 GRWD1Q9BQ67 446 aaKnown RBP eCLIP25.3■■□□□ 1.644e-7■■□□□ 12.9
USP48-201ENST00000308271 RAPGEF2Q9Y4G8 1499 aa25.28■■□□□ 1.64
USP48-201ENST00000308271 RUSC2Q8N2Y8 1516 aa25.28■■□□□ 1.64
USP48-201ENST00000308271 FANCIQ9NVI1 1328 aa25.28■■□□□ 1.64
USP48-201ENST00000308271 CUX2O14529 1486 aa25.26■■□□□ 1.63
USP48-201ENST00000308271 IPO9Q96P70 1041 aaKnown RBP25.24■■□□□ 1.63
USP48-201ENST00000308271 TCERG1O14776 1098 aaKnown RBP25.21■■□□□ 1.63
USP48-201ENST00000308271 TRIM44Q96DX7 344 aaPredicted RBP25.21■■□□□ 1.63
USP48-201ENST00000308271 CFDP1Q9UEE9 299 aaPredicted RBP25.2■■□□□ 1.62
USP48-201ENST00000308271 KNSTRNQ9Y448 316 aa25.18■■□□□ 1.62
USP48-201ENST00000308271 RGS3P49796 1198 aa25.17■■□□□ 1.62
USP48-201ENST00000308271 CDCA8Q53HL2 280 aa25.17■■□□□ 1.62
USP48-201ENST00000308271 NUDCQ9Y266 331 aa25.16■■□□□ 1.62
USP48-201ENST00000308271 RGL3Q3MIN7 710 aa25.14■■□□□ 1.62
USP48-201ENST00000308271 CHGAP10645 457 aaKnown RBP25.13■■□□□ 1.61
USP48-201ENST00000308271 FMN1Q68DA7 1419 aa25.1■■□□□ 1.61
USP48-201ENST00000308271 PLEKHD1A6NEE1 506 aa25.09■■□□□ 1.61
USP48-201ENST00000308271 GOLGA6L22H0YM25 854 aa25.09■■□□□ 1.61
USP48-201ENST00000308271 RCAN3Q9UKA8 241 aa25.09■■□□□ 1.61
USP48-201ENST00000308271 MPHOSPH9Q99550 1183 aa25.06■■□□□ 1.6
USP48-201ENST00000308271 SMARCA2P51531 1590 aa25.03■■□□□ 1.6
USP48-201ENST00000308271 NAP1L5Q96NT1 182 aaPredicted RBP25.03■■□□□ 1.6
USP48-201ENST00000308271 CC2D1BQ5T0F9 858 aaKnown RBP25.02■■□□□ 1.6
USP48-201ENST00000308271 L1TD1Q5T7N2 865 aaKnown RBP25.02■■□□□ 1.6
USP48-201ENST00000308271 USP35Q9P2H5 1018 aa25.02■■□□□ 1.6
USP48-201ENST00000308271 RALBP1Q15311 655 aa25.02■■□□□ 1.6
USP48-201ENST00000308271 ZBED9Q6R2W3 1325 aa25.01■■□□□ 1.59
USP48-201ENST00000308271 L3MBTL2Q969R5 705 aa25.01■■□□□ 1.59
USP48-201ENST00000308271 MYH16Q9H6N6 1097 aa25■■□□□ 1.59
USP48-201ENST00000308271 CHMP7Q8WUX9 453 aaPredicted RBP24.98■■□□□ 1.59
USP48-201ENST00000308271 SLC24A1O60721 1099 aa24.98■■□□□ 1.59
USP48-201ENST00000308271 PRKRIP1Q9H875 184 aaPredicted RBP24.98■■□□□ 1.59
USP48-201ENST00000308271 FOXD1Q16676 465 aa24.97■■□□□ 1.59
USP48-201ENST00000308271 SMARCA4P51532 1647 aa24.97■■□□□ 1.59
USP48-201ENST00000308271 DCAF11Q8TEB1 546 aa24.97■■□□□ 1.59
USP48-201ENST00000308271 KTN1Q86UP2 1357 aaKnown RBP24.96■■□□□ 1.59
USP48-201ENST00000308271 CFAP53Q96M91 514 aa24.96■■□□□ 1.59
USP48-201ENST00000308271 TMF1P82094 1093 aa24.95■■□□□ 1.58
USP48-201ENST00000308271 PDE3BQ13370 1112 aa24.93■■□□□ 1.58
USP48-201ENST00000308271 FTSJ3Q8IY81 847 aaKnown RBP24.93■■□□□ 1.58
USP48-201ENST00000308271 KIF21BO75037 1637 aa24.91■■□□□ 1.58
USP48-201ENST00000308271 FRAT1Q92837 279 aaPredicted RBP24.9■■□□□ 1.58
USP48-201ENST00000308271 PKD2Q13563 968 aa24.88■■□□□ 1.57
USP48-201ENST00000308271 ROCK2O75116 1388 aaKnown RBP24.88■■□□□ 1.57
USP48-201ENST00000308271 MS4A1P11836 297 aa24.86■■□□□ 1.57
USP48-201ENST00000308271 NEUROD2Q15784 382 aa24.85■■□□□ 1.57
USP48-201ENST00000308271 FHOD3Q2V2M9 1422 aa24.84■■□□□ 1.57
USP48-201ENST00000308271 NLRP13Q86W25 1043 aa24.83■■□□□ 1.57
USP48-201ENST00000308271 NCLP19338 710 aaKnown RBP24.82■■□□□ 1.56
USP48-201ENST00000308271 PDE4AP27815 886 aa24.82■■□□□ 1.56
USP48-201ENST00000308271 CCDC18Q5T9S5 1454 aa24.81■■□□□ 1.56
USP48-201ENST00000308271 RRBP1Q9P2E9 1410 aaKnown RBP24.79■■□□□ 1.56
USP48-201ENST00000308271 ZBTB4Q9P1Z0 1013 aaPredicted RBP24.79■■□□□ 1.56
USP48-201ENST00000308271 HSCBQ8IWL3 235 aa24.78■■□□□ 1.56
USP48-201ENST00000308271 EIF4G1Q04637 1599 aaKnown RBP24.77■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms