RNA–Protein interactions for RNA: ENST00000303531.11

PRKCB-201, Transcript of protein kinase C beta, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene PRKCB, Length 7,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKCB-201ENST00000303531 CEP162Q5TB80 1403 aa18.55■□□□□ 0.56
PRKCB-201ENST00000303531 GOLGA3Q08378 1498 aa18.53■□□□□ 0.56
PRKCB-201ENST00000303531 CCDC180Q9P1Z9 1646 aa18.51■□□□□ 0.55
PRKCB-201ENST00000303531 CHMP7Q8WUX9 453 aaPredicted RBP18.5■□□□□ 0.55
PRKCB-201ENST00000303531 EEA1Q15075 1411 aa18.48■□□□□ 0.55
PRKCB-201ENST00000303531 RSF1Q96T23 1441 aaPredicted RBP18.45■□□□□ 0.54
PRKCB-201ENST00000303531 MYH16Q9H6N6 1097 aa18.44■□□□□ 0.54
PRKCB-201ENST00000303531 SENP3-EIF4A1A0A087X0R7 540 aa18.4■□□□□ 0.54
PRKCB-201ENST00000303531 SENP3Q9H4L4 574 aaPredicted RBP18.4■□□□□ 0.54
PRKCB-201ENST00000303531 GLIPR1L2Q4G1C9 344 aa18.4■□□□□ 0.54
PRKCB-201ENST00000303531 RGL3Q3MIN7 710 aa18.39■□□□□ 0.53
PRKCB-201ENST00000303531 WRNQ14191 1432 aaPredicted RBP eCLIP18.38■□□□□ 0.535e-6■■■■■ 29.2
PRKCB-201ENST00000303531 DDRGK1Q96HY6 314 aa18.38■□□□□ 0.53
PRKCB-201ENST00000303531 KCNH8Q96L42 1107 aa18.36■□□□□ 0.53
PRKCB-201ENST00000303531 SUPT16HQ9Y5B9 1047 aaKnown RBP18.36■□□□□ 0.53
PRKCB-201ENST00000303531 BECN1Q14457 450 aa18.35■□□□□ 0.53
PRKCB-201ENST00000303531 PLEKHD1A6NEE1 506 aa18.35■□□□□ 0.53
PRKCB-201ENST00000303531 TNIKQ9UKE5 1360 aa18.35■□□□□ 0.53
PRKCB-201ENST00000303531 RB1CC1Q8TDY2 1594 aa18.32■□□□□ 0.52
PRKCB-201ENST00000303531 CEP164Q9UPV0 1460 aa18.31■□□□□ 0.52
PRKCB-201ENST00000303531 CARD11Q9BXL7 1154 aa18.3■□□□□ 0.52
PRKCB-201ENST00000303531 KNSTRNQ9Y448 316 aa18.29■□□□□ 0.52
PRKCB-201ENST00000303531 CFDP1Q9UEE9 299 aaPredicted RBP18.29■□□□□ 0.52
PRKCB-201ENST00000303531 KIF27Q86VH2 1401 aa18.29■□□□□ 0.52
PRKCB-201ENST00000303531 PPP1R15AO75807 674 aaPredicted RBP18.29■□□□□ 0.52
PRKCB-201ENST00000303531 SIN3AQ96ST3 1273 aa18.28■□□□□ 0.52
PRKCB-201ENST00000303531 ZBTB7CA1YPR0 619 aa18.28■□□□□ 0.52
PRKCB-201ENST00000303531 CFAP53Q96M91 514 aa18.27■□□□□ 0.52
PRKCB-201ENST00000303531 CDCA8Q53HL2 280 aa18.26■□□□□ 0.51
PRKCB-201ENST00000303531 PLEKHG5O94827 1062 aa18.25■□□□□ 0.51
PRKCB-201ENST00000303531 C14orf37Q86TY3 774 aa18.25■□□□□ 0.51
PRKCB-201ENST00000303531 BAZ1BQ9UIG0 1483 aaKnown RBP18.25■□□□□ 0.51
PRKCB-201ENST00000303531 ANP32EQ9BTT0 268 aa18.23■□□□□ 0.51
PRKCB-201ENST00000303531 TRIM44Q96DX7 344 aaPredicted RBP18.22■□□□□ 0.51
PRKCB-201ENST00000303531 NCLP19338 710 aaKnown RBP18.21■□□□□ 0.51
PRKCB-201ENST00000303531 GOLGA6L22H0YM25 854 aa18.21■□□□□ 0.51
PRKCB-201ENST00000303531 A0A0G2JS52 829 aa18.2■□□□□ 0.5
PRKCB-201ENST00000303531 FTSJ3Q8IY81 847 aaKnown RBP18.2■□□□□ 0.5
PRKCB-201ENST00000303531 PPP4R2Q9NY27 417 aa18.2■□□□□ 0.5
PRKCB-201ENST00000303531 PPM1GO15355 546 aaPredicted RBP18.19■□□□□ 0.5
PRKCB-201ENST00000303531 NEUROD2Q15784 382 aa18.19■□□□□ 0.5
PRKCB-201ENST00000303531 RGS3P49796 1198 aa18.13■□□□□ 0.49
PRKCB-201ENST00000303531 CCNB3Q8WWL7 1395 aa18.13■□□□□ 0.49
PRKCB-201ENST00000303531 LAS1LQ9Y4W2 734 aaKnown RBP18.13■□□□□ 0.49
PRKCB-201ENST00000303531 MAPK8IP3Q9UPT6 1336 aa18.13■□□□□ 0.49
PRKCB-201ENST00000303531 CC2D1BQ5T0F9 858 aaKnown RBP18.12■□□□□ 0.49
PRKCB-201ENST00000303531 CASC1Q6TDU7 716 aa18.12■□□□□ 0.49
PRKCB-201ENST00000303531 NACADO15069 1562 aa18.11■□□□□ 0.49
PRKCB-201ENST00000303531 FRAT1Q92837 279 aaPredicted RBP18.11■□□□□ 0.49
PRKCB-201ENST00000303531 B4GALNT3Q6L9W6 998 aa18.09■□□□□ 0.49
PRKCB-201ENST00000303531 TNNT2P45379 298 aaPredicted RBP18.09■□□□□ 0.49
PRKCB-201ENST00000303531 NUDCQ9Y266 331 aa18.08■□□□□ 0.49
PRKCB-201ENST00000303531 NOP58Q9Y2X3 529 aaKnown RBP18.08■□□□□ 0.48
PRKCB-201ENST00000303531 PTMAP06454 111 aaKnown RBP18.06■□□□□ 0.48
PRKCB-201ENST00000303531 TPRNQ4KMQ1 711 aa18.06■□□□□ 0.48
PRKCB-201ENST00000303531 FHAD1B1AJZ9 1412 aa18.06■□□□□ 0.48
PRKCB-201ENST00000303531 CDK11BP21127 795 aaKnown RBP18.05■□□□□ 0.48
PRKCB-201ENST00000303531 POGKQ9P215 609 aa18.04■□□□□ 0.48
PRKCB-201ENST00000303531 BAZ1AQ9NRL2 1556 aaPredicted RBP18.03■□□□□ 0.48
PRKCB-201ENST00000303531 SOGA1O94964 1423 aa18.03■□□□□ 0.48
PRKCB-201ENST00000303531 ARID4BQ4LE39 1312 aaPredicted RBP18.03■□□□□ 0.48
PRKCB-201ENST00000303531 DCAF11Q8TEB1 546 aa18.03■□□□□ 0.48
PRKCB-201ENST00000303531 ZRSR1Q15695 479 aaKnown RBP18.01■□□□□ 0.47
PRKCB-201ENST00000303531 U2SURPO15042 1029 aaKnown RBP18.01■□□□□ 0.47
PRKCB-201ENST00000303531 TMF1P82094 1093 aa18■□□□□ 0.47
PRKCB-201ENST00000303531 TIMELESSQ9UNS1 1208 aa17.99■□□□□ 0.47
PRKCB-201ENST00000303531 ERICH6BQ5W0A0 696 aa17.99■□□□□ 0.47
PRKCB-201ENST00000303531 CCER2I3L3R5 266 aa17.98■□□□□ 0.47
PRKCB-201ENST00000303531 DNTTIP2Q5QJE6 756 aaKnown RBP17.98■□□□□ 0.47
PRKCB-201ENST00000303531 CARMIL1Q5VZK9 1371 aa17.98■□□□□ 0.47
PRKCB-201ENST00000303531 CECR2Q9BXF3 1484 aa17.98■□□□□ 0.47
PRKCB-201ENST00000303531 HAP1P54257 671 aaPredicted RBP17.97■□□□□ 0.47
PRKCB-201ENST00000303531 RTN4Q9NQC3 1192 aaKnown RBP17.97■□□□□ 0.47
PRKCB-201ENST00000303531 EIF4G1Q04637 1599 aaKnown RBP17.97■□□□□ 0.47
PRKCB-201ENST00000303531 MS4A1P11836 297 aa17.97■□□□□ 0.47
PRKCB-201ENST00000303531 SETD5Q9C0A6 1442 aa17.97■□□□□ 0.47
PRKCB-201ENST00000303531 CHMP4BQ9H444 224 aaKnown RBP17.96■□□□□ 0.47
PRKCB-201ENST00000303531 HSP90AB1P08238 724 aaKnown RBP17.96■□□□□ 0.47
PRKCB-201ENST00000303531 CUX2O14529 1486 aa17.96■□□□□ 0.46
PRKCB-201ENST00000303531 HSPA5P11021 654 aaKnown RBP17.95■□□□□ 0.46
PRKCB-201ENST00000303531 VPS8Q8N3P4 1428 aa17.93■□□□□ 0.46
PRKCB-201ENST00000303531 NAP1L5Q96NT1 182 aaPredicted RBP17.92■□□□□ 0.46
PRKCB-201ENST00000303531 PNNQ9H307 717 aaKnown RBP17.91■□□□□ 0.46
PRKCB-201ENST00000303531 ARHGAP35Q9NRY4 1499 aa17.91■□□□□ 0.46
PRKCB-201ENST00000303531 LMOD2Q6P5Q4 547 aa17.91■□□□□ 0.46
PRKCB-201ENST00000303531 PLCB2Q00722 1185 aa17.9■□□□□ 0.46
PRKCB-201ENST00000303531 ERCC6Q03468 1493 aa17.9■□□□□ 0.46
PRKCB-201ENST00000303531 OS9Q13438 667 aaPredicted RBP17.9■□□□□ 0.46
PRKCB-201ENST00000303531 KANK4Q5T7N3 995 aaPredicted RBP17.89■□□□□ 0.45
PRKCB-201ENST00000303531 KANK1Q14678 1352 aa17.88■□□□□ 0.45
PRKCB-201ENST00000303531 RBM19Q9Y4C8 960 aaKnown RBP17.88■□□□□ 0.45
PRKCB-201ENST00000303531 FOXD1Q16676 465 aa17.87■□□□□ 0.45
PRKCB-201ENST00000303531 MORC1Q86VD1 984 aa17.87■□□□□ 0.45
PRKCB-201ENST00000303531 HSCBQ8IWL3 235 aa17.86■□□□□ 0.45
PRKCB-201ENST00000303531 TAOK2Q9UL54 1235 aa17.85■□□□□ 0.45
PRKCB-201ENST00000303531 SRPK2P78362 688 aaKnown RBP17.85■□□□□ 0.45
PRKCB-201ENST00000303531 PKD2Q13563 968 aa17.85■□□□□ 0.45
PRKCB-201ENST00000303531 ABCC8Q09428 1581 aa17.85■□□□□ 0.45
PRKCB-201ENST00000303531 FGD1P98174 961 aa17.84■□□□□ 0.45
PRKCB-201ENST00000303531 KCNJ4P48050 445 aa17.84■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 9.4 ms