RNA–Protein interactions for RNA: ENST00000298966.6

SMCO4-201, Transcript of single-pass membrane protein with coiled-coil domains 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMCO4, Length 1,104 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCO4-201ENST00000298966 NPM1P06748 294 aaKnown RBP eCLIP36.63■■■■□ 3.45
SMCO4-201ENST00000298966 RUSC2Q8N2Y8 1516 aa36.61■■■■□ 3.45
SMCO4-201ENST00000298966 FAM69CQ0P6D2 419 aa36.61■■■■□ 3.45
SMCO4-201ENST00000298966 ABCC10Q5T3U5 1492 aa36.6■■■■□ 3.45
SMCO4-201ENST00000298966 MAPKBP1O60336 1514 aa36.54■■■■□ 3.44
SMCO4-201ENST00000298966 DIP2BQ9P265 1576 aa36.49■■■■□ 3.43
SMCO4-201ENST00000298966 ADCY10Q96PN6 1610 aa36.46■■■■□ 3.43
SMCO4-201ENST00000298966 KIAA0586Q9BVV6 1533 aa36.37■■■■□ 3.41
SMCO4-201ENST00000298966 KDM6BO15054 1643 aa36.37■■■■□ 3.41
SMCO4-201ENST00000298966 TSPOAP1O95153 1857 aa36.31■■■■□ 3.4
SMCO4-201ENST00000298966 CUL7Q14999 1698 aa36.26■■■■□ 3.4
SMCO4-201ENST00000298966 IGF1RP08069 1367 aa36.25■■■■□ 3.39
SMCO4-201ENST00000298966 KDM4FA0A1W2PPD8 638 aa36.23■■■■□ 3.39
SMCO4-201ENST00000298966 KIF27Q86VH2 1401 aa36.23■■■■□ 3.39
SMCO4-201ENST00000298966 PTPRGP23470 1445 aa36.17■■■■□ 3.38
SMCO4-201ENST00000298966 TTBK1Q5TCY1 1321 aaPredicted RBP36.09■■■■□ 3.37
SMCO4-201ENST00000298966 CARMIL2Q6F5E8 1435 aa36.08■■■■□ 3.37
SMCO4-201ENST00000298966 TNIKQ9UKE5 1360 aa36.05■■■■□ 3.36
SMCO4-201ENST00000298966 ABCC2Q92887 1545 aa36.04■■■■□ 3.36
SMCO4-201ENST00000298966 CARMIL1Q5VZK9 1371 aa36.02■■■■□ 3.36
SMCO4-201ENST00000298966 PLB1Q6P1J6 1458 aa36■■■■□ 3.35
SMCO4-201ENST00000298966 ASXL2Q76L83 1435 aa35.99■■■■□ 3.35
SMCO4-201ENST00000298966 GLI2P10070 1586 aa35.97■■■■□ 3.35
SMCO4-201ENST00000298966 IQGAP2Q13576 1575 aa35.94■■■■□ 3.34
SMCO4-201ENST00000298966 PPRC1Q5VV67 1664 aaKnown RBP35.93■■■■□ 3.34
SMCO4-201ENST00000298966 UHRF1BP1LA0JNW5 1464 aa35.91■■■■□ 3.34
SMCO4-201ENST00000298966 UACAQ9BZF9 1416 aa35.87■■■■□ 3.33
SMCO4-201ENST00000298966 ADGRL1O94910 1474 aa35.82■■■■□ 3.32
SMCO4-201ENST00000298966 DISP1Q96F81 1524 aa35.78■■■■□ 3.32
SMCO4-201ENST00000298966 ILDR1Q86SU0 546 aaPredicted RBP35.78■■■■□ 3.32
SMCO4-201ENST00000298966 EPRSP07814 1512 aaKnown RBP35.77■■■■□ 3.32
SMCO4-201ENST00000298966 KDM5BQ9UGL1 1544 aa35.75■■■■□ 3.31
SMCO4-201ENST00000298966 MAP3K4Q9Y6R4 1608 aa35.74■■■■□ 3.31
SMCO4-201ENST00000298966 TEX14Q8IWB6 1497 aa35.73■■■■□ 3.31
SMCO4-201ENST00000298966 COL17A1Q9UMD9 1497 aaPredicted RBP35.72■■■■□ 3.31
SMCO4-201ENST00000298966 ZCCHC11Q5TAX3 1644 aaKnown RBP35.68■■■■□ 3.3
SMCO4-201ENST00000298966 UGGT2Q9NYU1 1516 aa35.67■■■■□ 3.3
SMCO4-201ENST00000298966 RAPGEF2Q9Y4G8 1499 aa35.63■■■■□ 3.29
SMCO4-201ENST00000298966 KIAA0556O60303 1618 aa35.62■■■■□ 3.29
SMCO4-201ENST00000298966 WDR7Q9Y4E6 1490 aa35.54■■■■□ 3.28
SMCO4-201ENST00000298966 HECW2Q9P2P5 1572 aa35.53■■■■□ 3.28
SMCO4-201ENST00000298966 CFAP43Q8NDM7 1665 aa35.41■■■■□ 3.26
SMCO4-201ENST00000298966 CD109Q6YHK3 1445 aa35.4■■■■□ 3.26
SMCO4-201ENST00000298966 CTTNBP2Q8WZ74 1663 aa35.4■■■■□ 3.26
SMCO4-201ENST00000298966 MAGI3Q5TCQ9 1506 aa35.39■■■■□ 3.26
SMCO4-201ENST00000298966 GOLGA3Q08378 1498 aa35.37■■■■□ 3.25
SMCO4-201ENST00000298966 KCNH8Q96L42 1107 aa35.36■■■■□ 3.25
SMCO4-201ENST00000298966 ABCA8O94911 1581 aa35.32■■■■□ 3.24
SMCO4-201ENST00000298966 KIF21BO75037 1637 aa35.21■■■■□ 3.23
SMCO4-201ENST00000298966 FAM9AQ8IZU1 332 aaPredicted RBP35.15■■■■□ 3.22
SMCO4-201ENST00000298966 ARAP3Q8WWN8 1544 aa35.13■■■■□ 3.21
SMCO4-201ENST00000298966 PRXQ9BXM0 1461 aa35.08■■■■□ 3.21
SMCO4-201ENST00000298966 ARID3CA6NKF2 412 aa35.05■■■■□ 3.2
SMCO4-201ENST00000298966 CHIC1Q5VXU3 224 aa35.04■■■■□ 3.2
SMCO4-201ENST00000298966 PHLDB1Q86UU1 1377 aa35.03■■■■□ 3.2
SMCO4-201ENST00000298966 ATP10BO94823 1461 aa35.03■■■■□ 3.2
SMCO4-201ENST00000298966 ABCA9Q8IUA7 1624 aa34.99■■■■□ 3.19
SMCO4-201ENST00000298966 P3H3Q8IVL6 736 aa34.98■■■■□ 3.19
SMCO4-201ENST00000298966 ADAMTSL3P82987 1691 aa34.95■■■■□ 3.19
SMCO4-201ENST00000298966 FBXO41Q8TF61 875 aa34.95■■■■□ 3.19
SMCO4-201ENST00000298966 PTPRMP28827 1452 aa34.95■■■■□ 3.19
SMCO4-201ENST00000298966 NEO1Q92859 1461 aa34.9■■■■□ 3.18
SMCO4-201ENST00000298966 RAPGEF3O95398 923 aa34.89■■■■□ 3.18
SMCO4-201ENST00000298966 RAPGEF6Q8TEU7 1601 aa34.84■■■■□ 3.17
SMCO4-201ENST00000298966 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP34.84■■■■□ 3.17
SMCO4-201ENST00000298966 HNRNPUL2Q1KMD3 747 aaKnown RBP34.84■■■■□ 3.17
SMCO4-201ENST00000298966 BCORL1Q5H9F3 1711 aa34.83■■■■□ 3.17
SMCO4-201ENST00000298966 SAMD9Q5K651 1589 aa34.82■■■■□ 3.16
SMCO4-201ENST00000298966 ARID4BQ4LE39 1312 aaPredicted RBP34.81■■■■□ 3.16
SMCO4-201ENST00000298966 FRMPD1Q5SYB0 1578 aa34.78■■■■□ 3.16
SMCO4-201ENST00000298966 MADDQ8WXG6 1647 aa34.77■■■■□ 3.16
SMCO4-201ENST00000298966 PCF11O94913 1555 aaKnown RBP34.74■■■■□ 3.15
SMCO4-201ENST00000298966 NUP153P49790 1475 aaKnown RBP34.68■■■■□ 3.14
SMCO4-201ENST00000298966 CSRNP3Q8WYN3 585 aa34.68■■■■□ 3.14
SMCO4-201ENST00000298966 LMTK3Q96Q04 1460 aa34.67■■■■□ 3.14
SMCO4-201ENST00000298966 ARHGEF40Q8TER5 1519 aa34.66■■■■□ 3.14
SMCO4-201ENST00000298966 DENND4BO75064 1496 aaPredicted RBP34.65■■■■□ 3.14
SMCO4-201ENST00000298966 RIMS1Q86UR5 1692 aaKnown RBP34.65■■■■□ 3.14
SMCO4-201ENST00000298966 RICTORQ6R327 1708 aa34.62■■■■□ 3.13
SMCO4-201ENST00000298966 PLEKHD1A6NEE1 506 aa34.62■■■■□ 3.13
SMCO4-201ENST00000298966 CFAP74Q9C0B2 1584 aa34.59■■■■□ 3.13
SMCO4-201ENST00000298966 AKNAQ7Z591 1439 aa34.59■■■■□ 3.13
SMCO4-201ENST00000298966 FHOD3Q2V2M9 1422 aa34.57■■■■□ 3.13
SMCO4-201ENST00000298966 RANGAP1P46060 587 aaPredicted RBP34.57■■■■□ 3.12
SMCO4-201ENST00000298966 FANCAO15360 1455 aa34.56■■■■□ 3.12
SMCO4-201ENST00000298966 POGZQ7Z3K3 1410 aa34.55■■■■□ 3.12
SMCO4-201ENST00000298966 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP34.5■■■■□ 3.11
SMCO4-201ENST00000298966 PLPPR3Q6T4P5 718 aa34.49■■■■□ 3.11
SMCO4-201ENST00000298966 ZMYM4Q5VZL5 1548 aa34.49■■■■□ 3.11
SMCO4-201ENST00000298966 HSPA2P54652 639 aa34.48■■■■□ 3.11
SMCO4-201ENST00000298966 EFCAB5A4FU69 1503 aa34.47■■■■□ 3.11
SMCO4-201ENST00000298966 ZFYVE16Q7Z3T8 1539 aa34.47■■■■□ 3.11
SMCO4-201ENST00000298966 TTC37Q6PGP7 1564 aa34.45■■■■□ 3.1
SMCO4-201ENST00000298966 EEA1Q15075 1411 aa34.44■■■■□ 3.1
SMCO4-201ENST00000298966 MAGI2Q86UL8 1455 aa34.42■■■■□ 3.1
SMCO4-201ENST00000298966 YEATS2Q9ULM3 1422 aa34.42■■■■□ 3.1
SMCO4-201ENST00000298966 SIGLEC1Q9BZZ2 1709 aa34.38■■■■□ 3.09
SMCO4-201ENST00000298966 MLECQ14165 292 aa34.37■■■■□ 3.09
SMCO4-201ENST00000298966 FER1L4A9Z1Z3 1794 aa34.36■■■■□ 3.09
SMCO4-201ENST00000298966 HECW1Q76N89 1606 aa34.36■■■■□ 3.09
Retrieved 100 of 20,778 RNA–protein pairs in 182.6 ms