RNA–Protein interactions for RNA: ENST00000296581.10

LSM6-201, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM6, Length 2,259 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-201ENST00000296581 PCGF6Q9BYE7 350 aa24.31■■□□□ 1.48
LSM6-201ENST00000296581 SNAPC4Q5SXM2 1469 aa24.28■■□□□ 1.48
LSM6-201ENST00000296581 MAGI1Q96QZ7 1491 aaPredicted RBP24.26■■□□□ 1.47
LSM6-201ENST00000296581 EFCAB5A4FU69 1503 aa24.25■■□□□ 1.47
LSM6-201ENST00000296581 PPARGC1BQ86YN6 1023 aaKnown RBP24.21■■□□□ 1.47
LSM6-201ENST00000296581 GRIN2AQ12879 1464 aa24.16■■□□□ 1.46
LSM6-201ENST00000296581 SAMD9Q5K651 1589 aa24.16■■□□□ 1.46
LSM6-201ENST00000296581 SYNJ2O15056 1496 aa24.16■■□□□ 1.46
LSM6-201ENST00000296581 IQGAP2Q13576 1575 aa24.13■■□□□ 1.45
LSM6-201ENST00000296581 APLP2Q06481 763 aa24.1■■□□□ 1.45
LSM6-201ENST00000296581 FHOD3Q2V2M9 1422 aa24.08■■□□□ 1.45
LSM6-201ENST00000296581 KIAA0586Q9BVV6 1533 aa24.07■■□□□ 1.44
LSM6-201ENST00000296581 P3H3Q8IVL6 736 aa24.04■■□□□ 1.44
LSM6-201ENST00000296581 UGGT2Q9NYU1 1516 aa24.04■■□□□ 1.44
LSM6-201ENST00000296581 CHMP7Q8WUX9 453 aaPredicted RBP24.04■■□□□ 1.44
LSM6-201ENST00000296581 MAP3K1Q13233 1512 aa24.02■■□□□ 1.44
LSM6-201ENST00000296581 PCF11O94913 1555 aaKnown RBP24.02■■□□□ 1.44
LSM6-201ENST00000296581 CEP170Q5SW79 1584 aa24.02■■□□□ 1.44
LSM6-201ENST00000296581 FMN1Q68DA7 1419 aa24■■□□□ 1.43
LSM6-201ENST00000296581 NUP160Q12769 1436 aa24■■□□□ 1.43
LSM6-201ENST00000296581 TTBK1Q5TCY1 1321 aaPredicted RBP23.99■■□□□ 1.43
LSM6-201ENST00000296581 FYCO1Q9BQS8 1478 aa23.98■■□□□ 1.43
LSM6-201ENST00000296581 CASKIN1Q8WXD9 1431 aa23.97■■□□□ 1.43
LSM6-201ENST00000296581 TIAM1Q13009 1591 aa23.96■■□□□ 1.43
LSM6-201ENST00000296581 FBLN2P98095 1184 aa23.93■■□□□ 1.42
LSM6-201ENST00000296581 CFAP43Q8NDM7 1665 aa23.93■■□□□ 1.42
LSM6-201ENST00000296581 KANK4Q5T7N3 995 aaPredicted RBP23.91■■□□□ 1.42
LSM6-201ENST00000296581 DISP1Q96F81 1524 aa23.9■■□□□ 1.42
LSM6-201ENST00000296581 KIAA0556O60303 1618 aa23.89■■□□□ 1.42
LSM6-201ENST00000296581 CHD1O14646 1710 aa23.89■■□□□ 1.41
LSM6-201ENST00000296581 PELP1Q8IZL8 1130 aaKnown RBP23.87■■□□□ 1.41
LSM6-201ENST00000296581 LRRC9Q6ZRR7 1453 aa23.83■■□□□ 1.41
LSM6-201ENST00000296581 LRRIQ1Q96JM4 1722 aa23.81■■□□□ 1.4
LSM6-201ENST00000296581 JPH4Q96JJ6 628 aa23.77■■□□□ 1.4
LSM6-201ENST00000296581 ATP1B4Q9UN42 357 aaPredicted RBP23.77■■□□□ 1.4
LSM6-201ENST00000296581 HECW1Q76N89 1606 aa23.77■■□□□ 1.4
LSM6-201ENST00000296581 CARMIL2Q6F5E8 1435 aa23.74■■□□□ 1.39
LSM6-201ENST00000296581 CCDC18Q5T9S5 1454 aa23.72■■□□□ 1.39
LSM6-201ENST00000296581 RRBP1Q9P2E9 1410 aaKnown RBP23.71■■□□□ 1.39
LSM6-201ENST00000296581 HRCP23327 699 aa23.7■■□□□ 1.38
LSM6-201ENST00000296581 SHROOM2Q13796 1616 aa23.69■■□□□ 1.38
LSM6-201ENST00000296581 RAPGEF6Q8TEU7 1601 aa23.67■■□□□ 1.38
LSM6-201ENST00000296581 EPRSP07814 1512 aaKnown RBP23.66■■□□□ 1.38
LSM6-201ENST00000296581 CLASP1Q7Z460 1538 aa23.63■■□□□ 1.37
LSM6-201ENST00000296581 EHBP1L1Q8N3D4 1523 aa23.63■■□□□ 1.37
LSM6-201ENST00000296581 PRG4Q92954 1404 aaPredicted RBP23.62■■□□□ 1.37
LSM6-201ENST00000296581 MTUS2Q5JR59 1369 aa23.61■■□□□ 1.37
LSM6-201ENST00000296581 PHLDB1Q86UU1 1377 aa23.61■■□□□ 1.37
LSM6-201ENST00000296581 NUP153P49790 1475 aaKnown RBP23.61■■□□□ 1.37
LSM6-201ENST00000296581 CCNB3Q8WWL7 1395 aa23.6■■□□□ 1.37
LSM6-201ENST00000296581 MAGI3Q5TCQ9 1506 aa23.59■■□□□ 1.37
LSM6-201ENST00000296581 CDK13Q14004 1512 aaKnown RBP23.58■■□□□ 1.37
LSM6-201ENST00000296581 SUPT6HQ7KZ85 1726 aaKnown RBP23.56■■□□□ 1.36
LSM6-201ENST00000296581 PLB1Q6P1J6 1458 aa23.56■■□□□ 1.36
LSM6-201ENST00000296581 ABCA8O94911 1581 aa23.56■■□□□ 1.36
LSM6-201ENST00000296581 ARHGEF11O15085 1522 aa23.52■■□□□ 1.36
LSM6-201ENST00000296581 HNRNPUL2Q1KMD3 747 aaKnown RBP23.52■■□□□ 1.36
LSM6-201ENST00000296581 NCOA2Q15596 1464 aa23.52■■□□□ 1.36
LSM6-201ENST00000296581 PTPRGP23470 1445 aa23.49■■□□□ 1.35
LSM6-201ENST00000296581 ERCC6L2Q5T890 1561 aa23.47■■□□□ 1.35
LSM6-201ENST00000296581 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP23.45■■□□□ 1.35
LSM6-201ENST00000296581 FGD6Q6ZV73 1430 aa23.44■■□□□ 1.34
LSM6-201ENST00000296581 MYOM3Q5VTT5 1437 aa23.44■■□□□ 1.34
LSM6-201ENST00000296581 ARID3CA6NKF2 412 aa23.43■■□□□ 1.34
LSM6-201ENST00000296581 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.41■■□□□ 1.34
LSM6-201ENST00000296581 CDK11AQ9UQ88 783 aaPredicted RBP23.41■■□□□ 1.34
LSM6-201ENST00000296581 ZEB1P37275 1124 aaPredicted RBP23.4■■□□□ 1.34
LSM6-201ENST00000296581 TROQ12816 1431 aaPredicted RBP23.38■■□□□ 1.33
LSM6-201ENST00000296581 ATP10BO94823 1461 aa23.37■■□□□ 1.33
LSM6-201ENST00000296581 UACAQ9BZF9 1416 aa23.37■■□□□ 1.33
LSM6-201ENST00000296581 ADCY10Q96PN6 1610 aa23.36■■□□□ 1.33
LSM6-201ENST00000296581 FAM50AQ14320 339 aaKnown RBP23.35■■□□□ 1.33
LSM6-201ENST00000296581 CCER1Q8TC90 406 aaPredicted RBP23.34■■□□□ 1.33
LSM6-201ENST00000296581 PTPN23Q9H3S7 1636 aa23.32■■□□□ 1.32
LSM6-201ENST00000296581 ABCC2Q92887 1545 aa23.32■■□□□ 1.32
LSM6-201ENST00000296581 MIA2Q96PC5 1412 aa23.31■■□□□ 1.32
LSM6-201ENST00000296581 TCOF1Q13428 1488 aaKnown RBP23.31■■□□□ 1.32
LSM6-201ENST00000296581 OSCARQ8IYS5 282 aa23.29■■□□□ 1.32
LSM6-201ENST00000296581 ITGAEP38570 1179 aa23.28■■□□□ 1.32
LSM6-201ENST00000296581 UHRF1BP1LA0JNW5 1464 aa23.27■■□□□ 1.32
LSM6-201ENST00000296581 KIF14Q15058 1648 aa23.27■■□□□ 1.32
LSM6-201ENST00000296581 PLEKHD1A6NEE1 506 aa23.25■■□□□ 1.31
LSM6-201ENST00000296581 ITSN2Q9NZM3 1697 aa23.22■■□□□ 1.31
LSM6-201ENST00000296581 ABCC10Q5T3U5 1492 aa23.19■■□□□ 1.3
LSM6-201ENST00000296581 SETD5Q9C0A6 1442 aa23.19■■□□□ 1.3
LSM6-201ENST00000296581 GPATCH8Q9UKJ3 1502 aaKnown RBP23.18■■□□□ 1.3
LSM6-201ENST00000296581 MYT1Q01538 1121 aa23.18■■□□□ 1.3
LSM6-201ENST00000296581 PTPRKQ15262 1439 aa23.18■■□□□ 1.3
LSM6-201ENST00000296581 KDM5BQ9UGL1 1544 aa23.17■■□□□ 1.3
LSM6-201ENST00000296581 RAB3GAP2Q9H2M9 1393 aa23.16■■□□□ 1.3
LSM6-201ENST00000296581 ZCCHC11Q5TAX3 1644 aaKnown RBP23.16■■□□□ 1.3
LSM6-201ENST00000296581 CDC42BPAQ5VT25 1732 aa23.14■■□□□ 1.3
LSM6-201ENST00000296581 DHX57Q6P158 1386 aaKnown RBP23.13■■□□□ 1.29
LSM6-201ENST00000296581 HFM1A2PYH4 1435 aa23.1■■□□□ 1.29
LSM6-201ENST00000296581 DNMT1P26358 1616 aaKnown RBP23.1■■□□□ 1.29
LSM6-201ENST00000296581 CAMSAP2Q08AD1 1489 aa23.08■■□□□ 1.29
LSM6-201ENST00000296581 CFDP1Q9UEE9 299 aaPredicted RBP23.08■■□□□ 1.29
LSM6-201ENST00000296581 CLSPNQ9HAW4 1339 aa23.07■■□□□ 1.28
LSM6-201ENST00000296581 AKNAQ7Z591 1439 aa23.06■■□□□ 1.28
LSM6-201ENST00000296581 DAPK1P53355 1430 aa23.05■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms