RNA–Protein interactions for RNA: ENST00000274938.7

SCUBE3-201, Transcript of signal peptide, CUB domain and EGF like domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCUBE3, Length 7,356 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3-201ENST00000274938 GOLGA6L6A8MZA4 724 aa11.4□□□□□ -0.59
SCUBE3-201ENST00000274938 IRX6P78412 446 aaPredicted RBP11.39□□□□□ -0.59
SCUBE3-201ENST00000274938 EIF4G2P78344 907 aaKnown RBP eCLIP11.38□□□□□ -0.59
SCUBE3-201ENST00000274938 ARID3CA6NKF2 412 aa11.37□□□□□ -0.59
SCUBE3-201ENST00000274938 NOP58Q9Y2X3 529 aaKnown RBP11.37□□□□□ -0.59
SCUBE3-201ENST00000274938 NRDCO43847 1150 aa11.37□□□□□ -0.59
SCUBE3-201ENST00000274938 PPP4R2Q9NY27 417 aa11.35□□□□□ -0.59
SCUBE3-201ENST00000274938 L1TD1Q5T7N2 865 aaKnown RBP11.34□□□□□ -0.59
SCUBE3-201ENST00000274938 CHAF1AQ13111 956 aaPredicted RBP11.33□□□□□ -0.6
SCUBE3-201ENST00000274938 CHMP4BQ9H444 224 aaKnown RBP11.32□□□□□ -0.6
SCUBE3-201ENST00000274938 CFAP53Q96M91 514 aa11.31□□□□□ -0.6
SCUBE3-201ENST00000274938 PABPN1Q86U42 306 aaKnown RBP eCLIP11.3□□□□□ -0.6
SCUBE3-201ENST00000274938 TSPY4P0CV99 314 aa11.29□□□□□ -0.6
SCUBE3-201ENST00000274938 TSPY10P0CW01 314 aa11.29□□□□□ -0.6
SCUBE3-201ENST00000274938 CDCA8Q53HL2 280 aa11.29□□□□□ -0.6
SCUBE3-201ENST00000274938 MS4A1P11836 297 aa11.28□□□□□ -0.6
SCUBE3-201ENST00000274938 PLPPR3Q6T4P5 718 aa11.28□□□□□ -0.6
SCUBE3-201ENST00000274938 LAS1LQ9Y4W2 734 aaKnown RBP11.28□□□□□ -0.6
SCUBE3-201ENST00000274938 MSNP26038 577 aaKnown RBP11.27□□□□□ -0.61
SCUBE3-201ENST00000274938 FTSJ3Q8IY81 847 aaKnown RBP11.27□□□□□ -0.61
SCUBE3-201ENST00000274938 CHIC2Q9UKJ5 165 aa11.26□□□□□ -0.61
SCUBE3-201ENST00000274938 KDM2AQ9Y2K7 1162 aa11.26□□□□□ -0.61
SCUBE3-201ENST00000274938 HSP90AB1P08238 724 aaKnown RBP11.26□□□□□ -0.61
SCUBE3-201ENST00000274938 SUPT16HQ9Y5B9 1047 aaKnown RBP11.25□□□□□ -0.61
SCUBE3-201ENST00000274938 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.25□□□□□ -0.61
SCUBE3-201ENST00000274938 PTMSP20962 102 aa11.25□□□□□ -0.61
SCUBE3-201ENST00000274938 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.25□□□□□ -0.61
SCUBE3-201ENST00000274938 CFAP44Q96MT7 982 aa11.24□□□□□ -0.61
SCUBE3-201ENST00000274938 MTUS2Q5JR59 1369 aa11.23□□□□□ -0.61
SCUBE3-201ENST00000274938 PLCB2Q00722 1185 aa11.23□□□□□ -0.61
SCUBE3-201ENST00000274938 NPM1P06748 294 aaKnown RBP eCLIP11.23□□□□□ -0.61
SCUBE3-201ENST00000274938 ARID4BQ4LE39 1312 aaPredicted RBP11.23□□□□□ -0.61
SCUBE3-201ENST00000274938 DEKP35659 375 aaKnown RBP11.22□□□□□ -0.61
SCUBE3-201ENST00000274938 HSCBQ8IWL3 235 aa11.22□□□□□ -0.61
SCUBE3-201ENST00000274938 KNSTRNQ9Y448 316 aa11.21□□□□□ -0.61
SCUBE3-201ENST00000274938 GOLGA6L4A6NEF3 574 aa11.19□□□□□ -0.62
SCUBE3-201ENST00000274938 RGS3P49796 1198 aa11.19□□□□□ -0.62
SCUBE3-201ENST00000274938 MAPK8IP3Q9UPT6 1336 aa11.18□□□□□ -0.62
SCUBE3-201ENST00000274938 NUDCQ9Y266 331 aa11.18□□□□□ -0.62
SCUBE3-201ENST00000274938 ABCC9O60706 1549 aa11.18□□□□□ -0.62
SCUBE3-201ENST00000274938 RSF1Q96T23 1441 aaPredicted RBP11.17□□□□□ -0.62
SCUBE3-201ENST00000274938 CLIP1P30622 1438 aa11.17□□□□□ -0.62
SCUBE3-201ENST00000274938 HIRIP3Q9BW71 556 aaPredicted RBP11.16□□□□□ -0.62
SCUBE3-201ENST00000274938 MCCP23508 829 aa11.16□□□□□ -0.62
SCUBE3-201ENST00000274938 FGD1P98174 961 aa11.15□□□□□ -0.62
SCUBE3-201ENST00000274938 TPRNQ4KMQ1 711 aa11.15□□□□□ -0.62
SCUBE3-201ENST00000274938 KIAA2012Q0VF49 1180 aa11.15□□□□□ -0.63
SCUBE3-201ENST00000274938 PNNQ9H307 717 aaKnown RBP11.14□□□□□ -0.63
SCUBE3-201ENST00000274938 GBP4Q96PP9 640 aa11.13□□□□□ -0.63
SCUBE3-201ENST00000274938 ARID3AQ99856 593 aa11.13□□□□□ -0.63
SCUBE3-201ENST00000274938 DRC7Q8IY82 874 aa11.13□□□□□ -0.63
SCUBE3-201ENST00000274938 EEA1Q15075 1411 aa11.12□□□□□ -0.63
SCUBE3-201ENST00000274938 KCNJ4P48050 445 aa11.12□□□□□ -0.63
SCUBE3-201ENST00000274938 TNNT3P45378 269 aaPredicted RBP11.11□□□□□ -0.63
SCUBE3-201ENST00000274938 CCER2I3L3R5 266 aa11.11□□□□□ -0.63
SCUBE3-201ENST00000274938 PPP1R15AO75807 674 aaPredicted RBP11.11□□□□□ -0.63
SCUBE3-201ENST00000274938 CARD11Q9BXL7 1154 aa11.11□□□□□ -0.63
SCUBE3-201ENST00000274938 FRAT1Q92837 279 aaPredicted RBP11.11□□□□□ -0.63
SCUBE3-201ENST00000274938 RBM19Q9Y4C8 960 aaKnown RBP11.1□□□□□ -0.63
SCUBE3-201ENST00000274938 RRP7BPQ9NSQ0 103 aa11.1□□□□□ -0.63
SCUBE3-201ENST00000274938 OS9Q13438 667 aaPredicted RBP11.09□□□□□ -0.63
SCUBE3-201ENST00000274938 SYAP1Q96A49 352 aaPredicted RBP11.09□□□□□ -0.63
SCUBE3-201ENST00000274938 HAP1P54257 671 aaPredicted RBP11.09□□□□□ -0.63
SCUBE3-201ENST00000274938 B4GALNT3Q6L9W6 998 aa11.09□□□□□ -0.63
SCUBE3-201ENST00000274938 HTATSF1O43719 755 aaKnown RBP11.08□□□□□ -0.64
SCUBE3-201ENST00000274938 USP35Q9P2H5 1018 aa11.08□□□□□ -0.64
SCUBE3-201ENST00000274938 ZBTB7CA1YPR0 619 aa11.08□□□□□ -0.64
SCUBE3-201ENST00000274938 C14orf37Q86TY3 774 aa11.08□□□□□ -0.64
SCUBE3-201ENST00000274938 TIMELESSQ9UNS1 1208 aa11.08□□□□□ -0.64
SCUBE3-201ENST00000274938 A0A0G2JS52 829 aa11.07□□□□□ -0.64
SCUBE3-201ENST00000274938 CCDC180Q9P1Z9 1646 aa11.07□□□□□ -0.64
SCUBE3-201ENST00000274938 GOLGA3Q08378 1498 aa11.06□□□□□ -0.64
SCUBE3-201ENST00000274938 TCERG1O14776 1098 aaKnown RBP11.06□□□□□ -0.64
SCUBE3-201ENST00000274938 NEUROD2Q15784 382 aa11.05□□□□□ -0.64
SCUBE3-201ENST00000274938 SENP3-EIF4A1A0A087X0R7 540 aa11.05□□□□□ -0.64
SCUBE3-201ENST00000274938 GOLGA6L3A6NEY3 463 aa11.05□□□□□ -0.64
SCUBE3-201ENST00000274938 NAP1L2Q9ULW6 460 aaPredicted RBP11.04□□□□□ -0.64
SCUBE3-201ENST00000274938 GOLGA6L1Q8N7Z2 621 aa11.04□□□□□ -0.64
SCUBE3-201ENST00000274938 TULP1O00294 542 aaPredicted RBP11.04□□□□□ -0.64
SCUBE3-201ENST00000274938 TPM4P67936 248 aa11.04□□□□□ -0.64
SCUBE3-201ENST00000274938 CEP162Q5TB80 1403 aa11.02□□□□□ -0.64
SCUBE3-201ENST00000274938 RGL3Q3MIN7 710 aa11.02□□□□□ -0.65
SCUBE3-201ENST00000274938 PLEKHD1A6NEE1 506 aa11.01□□□□□ -0.65
SCUBE3-201ENST00000274938 RSPH6AQ9H0K4 717 aa11.01□□□□□ -0.65
SCUBE3-201ENST00000274938 IPO8O15397 1037 aaKnown RBP11.01□□□□□ -0.65
SCUBE3-201ENST00000274938 CSPP1Q1MSJ5 1256 aa11□□□□□ -0.65
SCUBE3-201ENST00000274938 TMF1P82094 1093 aa11□□□□□ -0.65
SCUBE3-201ENST00000274938 NOC3LQ8WTT2 800 aaKnown RBP11□□□□□ -0.65
SCUBE3-201ENST00000274938 PLEKHG5O94827 1062 aa11□□□□□ -0.65
SCUBE3-201ENST00000274938 RWDD1Q9H446 243 aaPredicted RBP11□□□□□ -0.65
SCUBE3-201ENST00000274938 GNL2Q13823 731 aaKnown RBP10.99□□□□□ -0.65
SCUBE3-201ENST00000274938 CCDC34Q96HJ3 373 aa10.99□□□□□ -0.65
SCUBE3-201ENST00000274938 KIAA1211Q6ZU35 1233 aa10.99□□□□□ -0.65
SCUBE3-201ENST00000274938 ZCCHC6Q5VYS8 1495 aaKnown RBP10.99□□□□□ -0.65
SCUBE3-201ENST00000274938 GOLGA2Q08379 1002 aa10.99□□□□□ -0.65
SCUBE3-201ENST00000274938 IPO9Q96P70 1041 aaKnown RBP10.98□□□□□ -0.65
SCUBE3-201ENST00000274938 SPRYD3Q8NCJ5 442 aa10.97□□□□□ -0.65
SCUBE3-201ENST00000274938 U2SURPO15042 1029 aaKnown RBP10.97□□□□□ -0.65
SCUBE3-201ENST00000274938 SETQ01105 290 aaPredicted RBP10.97□□□□□ -0.65
SCUBE3-201ENST00000274938 CC2D1BQ5T0F9 858 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 54.5 ms