RNA–Protein interactions for RNA: ENST00000269228.9

NPC1-201, Transcript of NPC intracellular cholesterol transporter 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NPC1, Length 5,157 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1-201ENST00000269228 EIF4G1Q04637 1599 aaKnown RBP18.82■□□□□ 0.6
NPC1-201ENST00000269228 CANXP27824 592 aaKnown RBP18.81■□□□□ 0.6
NPC1-201ENST00000269228 SENP3Q9H4L4 574 aaPredicted RBP18.8■□□□□ 0.6
NPC1-201ENST00000269228 TDRD9Q8NDG6 1382 aaKnown RBP18.78■□□□□ 0.6
NPC1-201ENST00000269228 GTF3C3Q9Y5Q9 886 aa18.76■□□□□ 0.59
NPC1-201ENST00000269228 TOP2AP11388 1531 aaKnown RBP18.76■□□□□ 0.59
NPC1-201ENST00000269228 BCL11AQ9H165 835 aa18.75■□□□□ 0.59
NPC1-201ENST00000269228 ZBTB47Q9UFB7 747 aaPredicted RBP18.74■□□□□ 0.59
NPC1-201ENST00000269228 HIRIP3Q9BW71 556 aaPredicted RBP18.73■□□□□ 0.59
NPC1-201ENST00000269228 CADPSQ9ULU8 1353 aa18.73■□□□□ 0.59
NPC1-201ENST00000269228 ATAD2BQ9ULI0 1458 aa18.73■□□□□ 0.59
NPC1-201ENST00000269228 ARID4BQ4LE39 1312 aaPredicted RBP18.72■□□□□ 0.59
NPC1-201ENST00000269228 RGL3Q3MIN7 710 aa18.72■□□□□ 0.59
NPC1-201ENST00000269228 FHAD1B1AJZ9 1412 aa18.7■□□□□ 0.58
NPC1-201ENST00000269228 FAM9BQ8IZU0 186 aa18.69■□□□□ 0.58
NPC1-201ENST00000269228 PPP1R15AO75807 674 aaPredicted RBP18.68■□□□□ 0.58
NPC1-201ENST00000269228 CCNB3Q8WWL7 1395 aa18.66■□□□□ 0.58
NPC1-201ENST00000269228 SMARCA4P51532 1647 aa18.65■□□□□ 0.58
NPC1-201ENST00000269228 SALL2Q9Y467 1007 aaPredicted RBP18.64■□□□□ 0.58
NPC1-201ENST00000269228 HNRNPUQ00839 825 aaKnown RBP eCLIP18.64■□□□□ 0.57
NPC1-201ENST00000269228 EIF4G2P78344 907 aaKnown RBP eCLIP18.63■□□□□ 0.57
NPC1-201ENST00000269228 TMC1Q8TDI8 760 aa18.62■□□□□ 0.57
NPC1-201ENST00000269228 ACIN1Q9UKV3 1341 aaKnown RBP18.58■□□□□ 0.57
NPC1-201ENST00000269228 CARMIL2Q6F5E8 1435 aa18.57■□□□□ 0.56
NPC1-201ENST00000269228 TRHP20396 242 aaPredicted RBP18.57■□□□□ 0.56
NPC1-201ENST00000269228 SCAF1Q9H7N4 1312 aaKnown RBP18.55■□□□□ 0.56
NPC1-201ENST00000269228 MRS2Q9HD23 443 aa18.54■□□□□ 0.56
NPC1-201ENST00000269228 WDR43Q15061 677 aaKnown RBP eCLIP18.52■□□□□ 0.56
NPC1-201ENST00000269228 SIN3AQ96ST3 1273 aa18.52■□□□□ 0.56
NPC1-201ENST00000269228 VPS8Q8N3P4 1428 aa18.52■□□□□ 0.56
NPC1-201ENST00000269228 PLEKHG5O94827 1062 aa18.52■□□□□ 0.55
NPC1-201ENST00000269228 C14orf37Q86TY3 774 aa18.52■□□□□ 0.55
NPC1-201ENST00000269228 KANK4Q5T7N3 995 aaPredicted RBP18.51■□□□□ 0.55
NPC1-201ENST00000269228 FANCD2Q9BXW9 1451 aa18.49■□□□□ 0.55
NPC1-201ENST00000269228 RTL5Q5HYW3 569 aaPredicted RBP18.48■□□□□ 0.55
NPC1-201ENST00000269228 CARD11Q9BXL7 1154 aa18.47■□□□□ 0.55
NPC1-201ENST00000269228 MLECQ14165 292 aa18.46■□□□□ 0.55
NPC1-201ENST00000269228 MIER1Q8N108 512 aa18.45■□□□□ 0.54
NPC1-201ENST00000269228 FKBP8Q14318 412 aa18.44■□□□□ 0.54
NPC1-201ENST00000269228 RAPGEF2Q9Y4G8 1499 aa18.44■□□□□ 0.54
NPC1-201ENST00000269228 ZBTB7CA1YPR0 619 aa18.44■□□□□ 0.54
NPC1-201ENST00000269228 FMN1Q68DA7 1419 aa18.44■□□□□ 0.54
NPC1-201ENST00000269228 ARHGAP35Q9NRY4 1499 aa18.43■□□□□ 0.54
NPC1-201ENST00000269228 JPH4Q96JJ6 628 aa18.4■□□□□ 0.54
NPC1-201ENST00000269228 FHOD3Q2V2M9 1422 aa18.39■□□□□ 0.53
NPC1-201ENST00000269228 GGT6Q6P531 493 aa18.38■□□□□ 0.53
NPC1-201ENST00000269228 KANK1Q14678 1352 aa18.37■□□□□ 0.53
NPC1-201ENST00000269228 CDCA8Q53HL2 280 aa18.37■□□□□ 0.53
NPC1-201ENST00000269228 EFCAB2Q5VUJ9 269 aa18.36■□□□□ 0.53
NPC1-201ENST00000269228 POGKQ9P215 609 aa18.35■□□□□ 0.53
NPC1-201ENST00000269228 DCAF11Q8TEB1 546 aa18.35■□□□□ 0.53
NPC1-201ENST00000269228 RUSC2Q8N2Y8 1516 aa18.34■□□□□ 0.53
NPC1-201ENST00000269228 KNSTRNQ9Y448 316 aa18.34■□□□□ 0.53
NPC1-201ENST00000269228 A0A0G2JS52 829 aa18.33■□□□□ 0.52
NPC1-201ENST00000269228 SETD5Q9C0A6 1442 aa18.31■□□□□ 0.52
NPC1-201ENST00000269228 PKD2Q13563 968 aa18.3■□□□□ 0.52
NPC1-201ENST00000269228 NCAPD3P42695 1498 aa18.29■□□□□ 0.52
NPC1-201ENST00000269228 PPM1GO15355 546 aaPredicted RBP18.29■□□□□ 0.52
NPC1-201ENST00000269228 SENP3-EIF4A1A0A087X0R7 540 aa18.29■□□□□ 0.52
NPC1-201ENST00000269228 FOXD1Q16676 465 aa18.29■□□□□ 0.52
NPC1-201ENST00000269228 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.29■□□□□ 0.52
NPC1-201ENST00000269228 NPM2Q86SE8 214 aaKnown RBP18.28■□□□□ 0.52
NPC1-201ENST00000269228 HAP1P54257 671 aaPredicted RBP18.26■□□□□ 0.51
NPC1-201ENST00000269228 HNRNPMP52272 730 aaKnown RBP eCLIP18.26■□□□□ 0.51
NPC1-201ENST00000269228 FGD5Q6ZNL6 1462 aa18.26■□□□□ 0.51
NPC1-201ENST00000269228 CFAP53Q96M91 514 aa18.25■□□□□ 0.51
NPC1-201ENST00000269228 LMOD2Q6P5Q4 547 aa18.24■□□□□ 0.51
NPC1-201ENST00000269228 RAD54L2Q9Y4B4 1467 aa18.23■□□□□ 0.51
NPC1-201ENST00000269228 CCDC136Q96JN2 1154 aa18.23■□□□□ 0.51
NPC1-201ENST00000269228 ANP32AP39687 249 aaKnown RBP18.22■□□□□ 0.51
NPC1-201ENST00000269228 NUP155O75694 1391 aa18.22■□□□□ 0.51
NPC1-201ENST00000269228 ANKRD30AQ9BXX3 1397 aa18.21■□□□□ 0.51
NPC1-201ENST00000269228 IRX6P78412 446 aaPredicted RBP18.21■□□□□ 0.51
NPC1-201ENST00000269228 GAPVD1Q14C86 1478 aa18.2■□□□□ 0.5
NPC1-201ENST00000269228 TNNT2P45379 298 aaPredicted RBP18.2■□□□□ 0.5
NPC1-201ENST00000269228 KIF3BO15066 747 aa18.19■□□□□ 0.5
NPC1-201ENST00000269228 HDGFP51858 240 aaKnown RBP18.19■□□□□ 0.5
NPC1-201ENST00000269228 RAB3GAP2Q9H2M9 1393 aa18.19■□□□□ 0.5
NPC1-201ENST00000269228 MPHOSPH9Q99550 1183 aa18.19■□□□□ 0.5
NPC1-201ENST00000269228 SAFB2Q14151 953 aaKnown RBP eCLIP18.19■□□□□ 0.5
NPC1-201ENST00000269228 PTPRGP23470 1445 aa18.18■□□□□ 0.5
NPC1-201ENST00000269228 CCDC18Q5T9S5 1454 aa18.18■□□□□ 0.5
NPC1-201ENST00000269228 IGF1RP08069 1367 aa18.17■□□□□ 0.5
NPC1-201ENST00000269228 OSCARQ8IYS5 282 aa18.17■□□□□ 0.5
NPC1-201ENST00000269228 CYB5RLQ6IPT4 315 aa18.17■□□□□ 0.5
NPC1-201ENST00000269228 TIMELESSQ9UNS1 1208 aa18.17■□□□□ 0.5
NPC1-201ENST00000269228 TMF1P82094 1093 aa18.16■□□□□ 0.5
NPC1-201ENST00000269228 CC2D1BQ5T0F9 858 aaKnown RBP18.16■□□□□ 0.5
NPC1-201ENST00000269228 SPAG9O60271 1321 aaKnown RBP18.16■□□□□ 0.5
NPC1-201ENST00000269228 NEUROD2Q15784 382 aa18.15■□□□□ 0.5
NPC1-201ENST00000269228 STK26Q9P289 416 aa18.14■□□□□ 0.49
NPC1-201ENST00000269228 SRPK2P78362 688 aaKnown RBP18.13■□□□□ 0.49
NPC1-201ENST00000269228 AQRO60306 1485 aaKnown RBP eCLIP18.12■□□□□ 0.492e-6■■■■□ 23.4
NPC1-201ENST00000269228 UPF2Q9HAU5 1272 aaKnown RBP18.11■□□□□ 0.49
NPC1-201ENST00000269228 RSPH4AQ5TD94 716 aa18.11■□□□□ 0.49
NPC1-201ENST00000269228 NUDCQ9Y266 331 aa18.1■□□□□ 0.49
NPC1-201ENST00000269228 HSPA5P11021 654 aaKnown RBP18.09■□□□□ 0.49
NPC1-201ENST00000269228 MAPK8IP3Q9UPT6 1336 aa18.08■□□□□ 0.49
NPC1-201ENST00000269228 HSP90AA1P07900 732 aaKnown RBP18.08■□□□□ 0.48
NPC1-201ENST00000269228 NESP48681 1621 aa18.07■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms