RNA–Protein interactions for RNA: ENST00000265077.7

VCAN-201, Transcript of versican, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VCAN, Length 12,625 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-201ENST00000265077 ARXQ96QS3 562 aa7.53□□□□□ -1.2
VCAN-201ENST00000265077 PNNQ9H307 717 aaKnown RBP7.53□□□□□ -1.2
VCAN-201ENST00000265077 LAS1LQ9Y4W2 734 aaKnown RBP7.53□□□□□ -1.2
VCAN-201ENST00000265077 PDE4CQ08493 712 aa7.52□□□□□ -1.21
VCAN-201ENST00000265077 DDX10Q13206 875 aaKnown RBP7.52□□□□□ -1.21
VCAN-201ENST00000265077 L1TD1Q5T7N2 865 aaKnown RBP7.51□□□□□ -1.21
VCAN-201ENST00000265077 TIMELESSQ9UNS1 1208 aa7.5□□□□□ -1.21
VCAN-201ENST00000265077 PABPN1Q86U42 306 aaKnown RBP eCLIP7.5□□□□□ -1.21
VCAN-201ENST00000265077 BECN1Q14457 450 aa7.5□□□□□ -1.21
VCAN-201ENST00000265077 PTMSP20962 102 aa7.49□□□□□ -1.21
VCAN-201ENST00000265077 TMC1Q8TDI8 760 aa7.49□□□□□ -1.21
VCAN-201ENST00000265077 FANCIQ9NVI1 1328 aa7.49□□□□□ -1.21
VCAN-201ENST00000265077 AMER1Q5JTC6 1135 aaPredicted RBP7.49□□□□□ -1.21
VCAN-201ENST00000265077 FAM9BQ8IZU0 186 aa7.48□□□□□ -1.21
VCAN-201ENST00000265077 CLIP1P30622 1438 aa7.47□□□□□ -1.21
VCAN-201ENST00000265077 MRS2Q9HD23 443 aa7.47□□□□□ -1.21
VCAN-201ENST00000265077 GOLGA3Q08378 1498 aa7.47□□□□□ -1.21
VCAN-201ENST00000265077 USP35Q9P2H5 1018 aa7.46□□□□□ -1.21
VCAN-201ENST00000265077 PPP4R2Q9NY27 417 aa7.45□□□□□ -1.22
VCAN-201ENST00000265077 ARID4BQ4LE39 1312 aaPredicted RBP7.45□□□□□ -1.22
VCAN-201ENST00000265077 IRX6P78412 446 aaPredicted RBP7.45□□□□□ -1.22
VCAN-201ENST00000265077 MYO15BQ96JP2 1530 aa7.44□□□□□ -1.22
VCAN-201ENST00000265077 WDR43Q15061 677 aaKnown RBP eCLIP7.44□□□□□ -1.22
VCAN-201ENST00000265077 P3H3Q8IVL6 736 aa7.44□□□□□ -1.22
VCAN-201ENST00000265077 GOLGA6L22H0YM25 854 aa7.43□□□□□ -1.22
VCAN-201ENST00000265077 CEP162Q5TB80 1403 aa7.43□□□□□ -1.22
VCAN-201ENST00000265077 MYH16Q9H6N6 1097 aa7.42□□□□□ -1.22
VCAN-201ENST00000265077 EIF4G2P78344 907 aaKnown RBP eCLIP7.42□□□□□ -1.22
VCAN-201ENST00000265077 ZNF777Q9ULD5 760 aaPredicted RBP7.42□□□□□ -1.22
VCAN-201ENST00000265077 RB1CC1Q8TDY2 1594 aa7.42□□□□□ -1.22
VCAN-201ENST00000265077 RSF1Q96T23 1441 aaPredicted RBP7.41□□□□□ -1.22
VCAN-201ENST00000265077 MTUS2Q5JR59 1369 aa7.41□□□□□ -1.22
VCAN-201ENST00000265077 PLEKHG5O94827 1062 aa7.41□□□□□ -1.22
VCAN-201ENST00000265077 DNTTIP2Q5QJE6 756 aaKnown RBP7.41□□□□□ -1.22
VCAN-201ENST00000265077 KAT6BQ8WYB5 2073 aa7.4□□□□□ -1.22
VCAN-201ENST00000265077 IPO9Q96P70 1041 aaKnown RBP7.4□□□□□ -1.22
VCAN-201ENST00000265077 CEP164Q9UPV0 1460 aa7.39□□□□□ -1.23
VCAN-201ENST00000265077 PDIA4P13667 645 aaKnown RBP7.39□□□□□ -1.23
VCAN-201ENST00000265077 FBLN2P98095 1184 aa7.39□□□□□ -1.23
VCAN-201ENST00000265077 RRP9O43818 475 aaKnown RBP7.39□□□□□ -1.23
VCAN-201ENST00000265077 TNNT3P45378 269 aaPredicted RBP7.39□□□□□ -1.23
VCAN-201ENST00000265077 TNIKQ9UKE5 1360 aa7.38□□□□□ -1.23
VCAN-201ENST00000265077 IL27Q8NEV9 243 aa7.38□□□□□ -1.23
VCAN-201ENST00000265077 NACADO15069 1562 aa7.38□□□□□ -1.23
VCAN-201ENST00000265077 MSNP26038 577 aaKnown RBP7.37□□□□□ -1.23
VCAN-201ENST00000265077 CDCA8Q53HL2 280 aa7.37□□□□□ -1.23
VCAN-201ENST00000265077 ZMYND15Q9H091 742 aa7.37□□□□□ -1.23
VCAN-201ENST00000265077 TSPY4P0CV99 314 aa7.36□□□□□ -1.23
VCAN-201ENST00000265077 TSPY10P0CW01 314 aa7.36□□□□□ -1.23
VCAN-201ENST00000265077 APPP05067 770 aa7.36□□□□□ -1.23
VCAN-201ENST00000265077 GSE1Q14687 1217 aa7.35□□□□□ -1.23
VCAN-201ENST00000265077 PTMAP06454 111 aaKnown RBP7.35□□□□□ -1.23
VCAN-201ENST00000265077 TAF7LQ5H9L4 462 aa7.35□□□□□ -1.23
VCAN-201ENST00000265077 ARID3CA6NKF2 412 aa7.34□□□□□ -1.23
VCAN-201ENST00000265077 ARID3AQ99856 593 aa7.34□□□□□ -1.23
VCAN-201ENST00000265077 ESF1Q9H501 851 aaKnown RBP7.33□□□□□ -1.24
VCAN-201ENST00000265077 CHAF1AQ13111 956 aaPredicted RBP7.33□□□□□ -1.24
VCAN-201ENST00000265077 KIF27Q86VH2 1401 aa7.33□□□□□ -1.24
VCAN-201ENST00000265077 CCER2I3L3R5 266 aa7.33□□□□□ -1.24
VCAN-201ENST00000265077 MAP7D2Q96T17 732 aa7.33□□□□□ -1.24
VCAN-201ENST00000265077 STAG3Q9UJ98 1225 aa7.33□□□□□ -1.24
VCAN-201ENST00000265077 FAM43AQ8N2R8 423 aa7.32□□□□□ -1.24
VCAN-201ENST00000265077 CASC1Q6TDU7 716 aa7.32□□□□□ -1.24
VCAN-201ENST00000265077 CHMP4BQ9H444 224 aaKnown RBP7.32□□□□□ -1.24
VCAN-201ENST00000265077 CHIC2Q9UKJ5 165 aa7.32□□□□□ -1.24
VCAN-201ENST00000265077 B4GALNT3Q6L9W6 998 aa7.31□□□□□ -1.24
VCAN-201ENST00000265077 FHAD1B1AJZ9 1412 aa7.31□□□□□ -1.24
VCAN-201ENST00000265077 WRNQ14191 1432 aaPredicted RBP eCLIP7.31□□□□□ -1.24
VCAN-201ENST00000265077 BAZ1AQ9NRL2 1556 aaPredicted RBP7.31□□□□□ -1.24
VCAN-201ENST00000265077 MS4A1P11836 297 aa7.3□□□□□ -1.24
VCAN-201ENST00000265077 BRPF3Q9ULD4 1205 aa7.3□□□□□ -1.24
VCAN-201ENST00000265077 CHGAP10645 457 aaKnown RBP7.3□□□□□ -1.24
VCAN-201ENST00000265077 GOLGA6L3A6NEY3 463 aa7.29□□□□□ -1.24
VCAN-201ENST00000265077 KDM2AQ9Y2K7 1162 aa7.29□□□□□ -1.24
VCAN-201ENST00000265077 MTERF4Q7Z6M4 381 aaKnown RBP7.29□□□□□ -1.24
VCAN-201ENST00000265077 FTSJ3Q8IY81 847 aaKnown RBP7.29□□□□□ -1.24
VCAN-201ENST00000265077 CCNB3Q8WWL7 1395 aa7.29□□□□□ -1.24
VCAN-201ENST00000265077 CFAP53Q96M91 514 aa7.29□□□□□ -1.24
VCAN-201ENST00000265077 TPM2P07951 284 aa7.28□□□□□ -1.24
VCAN-201ENST00000265077 RBM10P98175 930 aaKnown RBP7.28□□□□□ -1.24
VCAN-201ENST00000265077 KNSTRNQ9Y448 316 aa7.28□□□□□ -1.24
VCAN-201ENST00000265077 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.27□□□□□ -1.24
VCAN-201ENST00000265077 NRDCO43847 1150 aa7.27□□□□□ -1.25
VCAN-201ENST00000265077 HIRIP3Q9BW71 556 aaPredicted RBP7.27□□□□□ -1.25
VCAN-201ENST00000265077 BAZ1BQ9UIG0 1483 aaKnown RBP7.26□□□□□ -1.25
VCAN-201ENST00000265077 RRP7BPQ9NSQ0 103 aa7.26□□□□□ -1.25
VCAN-201ENST00000265077 ZRSR1Q15695 479 aaKnown RBP7.26□□□□□ -1.25
VCAN-201ENST00000265077 CFAP44Q96MT7 982 aa7.26□□□□□ -1.25
VCAN-201ENST00000265077 TAF3Q5VWG9 929 aa7.25□□□□□ -1.25
VCAN-201ENST00000265077 HAP1P54257 671 aaPredicted RBP7.25□□□□□ -1.25
VCAN-201ENST00000265077 GOLGA6L6A8MZA4 724 aa7.25□□□□□ -1.25
VCAN-201ENST00000265077 PDZRN4Q6ZMN7 1036 aaPredicted RBP7.25□□□□□ -1.25
VCAN-201ENST00000265077 CALRP27797 417 aaKnown RBP7.24□□□□□ -1.25
VCAN-201ENST00000265077 FAM13BQ9NYF5 915 aa7.24□□□□□ -1.25
VCAN-201ENST00000265077 ZNF771Q7L3S4 317 aaPredicted RBP7.23□□□□□ -1.25
VCAN-201ENST00000265077 HSCBQ8IWL3 235 aa7.23□□□□□ -1.25
VCAN-201ENST00000265077 BBXQ8WY36 941 aaPredicted RBP7.23□□□□□ -1.25
VCAN-201ENST00000265077 VPS8Q8N3P4 1428 aa7.23□□□□□ -1.25
VCAN-201ENST00000265077 TCERG1O14776 1098 aaKnown RBP7.23□□□□□ -1.25
VCAN-201ENST00000265077 NPM1P06748 294 aaKnown RBP eCLIP7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms