RNA–Protein interactions for RNA: ENST00000263388.6

NOTCH3-201, Transcript of notch 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NOTCH3, Length 8,666 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-201ENST00000263388 EIF4G2P78344 907 aaKnown RBP eCLIP22.98■■□□□ 1.27
NOTCH3-201ENST00000263388 CHIC2Q9UKJ5 165 aa22.96■■□□□ 1.27
NOTCH3-201ENST00000263388 CLIP1P30622 1438 aa22.96■■□□□ 1.27
NOTCH3-201ENST00000263388 KDM2AQ9Y2K7 1162 aa22.95■■□□□ 1.26
NOTCH3-201ENST00000263388 RSF1Q96T23 1441 aaPredicted RBP22.92■■□□□ 1.26
NOTCH3-201ENST00000263388 MIER1Q8N108 512 aa22.9■■□□□ 1.26
NOTCH3-201ENST00000263388 CASC1Q6TDU7 716 aa22.9■■□□□ 1.26
NOTCH3-201ENST00000263388 SCAF1Q9H7N4 1312 aaKnown RBP22.9■■□□□ 1.26
NOTCH3-201ENST00000263388 GOLGA3Q08378 1498 aa22.87■■□□□ 1.25
NOTCH3-201ENST00000263388 RB1CC1Q8TDY2 1594 aa22.87■■□□□ 1.25
NOTCH3-201ENST00000263388 IRX6P78412 446 aaPredicted RBP22.86■■□□□ 1.25
NOTCH3-201ENST00000263388 EEA1Q15075 1411 aa22.86■■□□□ 1.25
NOTCH3-201ENST00000263388 ZRSR1Q15695 479 aaKnown RBP22.85■■□□□ 1.25
NOTCH3-201ENST00000263388 PLPPR3Q6T4P5 718 aa22.81■■□□□ 1.24
NOTCH3-201ENST00000263388 CDCA8Q53HL2 280 aa22.8■■□□□ 1.24
NOTCH3-201ENST00000263388 FTSJ3Q8IY81 847 aaKnown RBP22.78■■□□□ 1.24
NOTCH3-201ENST00000263388 PTMAP06454 111 aaKnown RBP22.77■■□□□ 1.24
NOTCH3-201ENST00000263388 CFAP53Q96M91 514 aa22.76■■□□□ 1.23
NOTCH3-201ENST00000263388 ERICH6BQ5W0A0 696 aa22.75■■□□□ 1.23
NOTCH3-201ENST00000263388 DNTTIP2Q5QJE6 756 aaKnown RBP22.75■■□□□ 1.23
NOTCH3-201ENST00000263388 PPM1GO15355 546 aaPredicted RBP22.73■■□□□ 1.23
NOTCH3-201ENST00000263388 KNSTRNQ9Y448 316 aa22.73■■□□□ 1.23
NOTCH3-201ENST00000263388 CEP162Q5TB80 1403 aa22.72■■□□□ 1.23
NOTCH3-201ENST00000263388 HIRIP3Q9BW71 556 aaPredicted RBP22.7■■□□□ 1.22
NOTCH3-201ENST00000263388 CHMP7Q8WUX9 453 aaPredicted RBP22.69■■□□□ 1.22
NOTCH3-201ENST00000263388 GOLGA6L6A8MZA4 724 aa22.67■■□□□ 1.22
NOTCH3-201ENST00000263388 RRP7BPQ9NSQ0 103 aa22.66■■□□□ 1.22
NOTCH3-201ENST00000263388 CHMP4BQ9H444 224 aaKnown RBP22.65■■□□□ 1.22
NOTCH3-201ENST00000263388 PPP1R15AO75807 674 aaPredicted RBP22.64■■□□□ 1.22
NOTCH3-201ENST00000263388 SUPT16HQ9Y5B9 1047 aaKnown RBP22.62■■□□□ 1.21
NOTCH3-201ENST00000263388 CEP164Q9UPV0 1460 aa22.61■■□□□ 1.21
NOTCH3-201ENST00000263388 A0A0G2JS52 829 aa22.61■■□□□ 1.21
NOTCH3-201ENST00000263388 C14orf37Q86TY3 774 aa22.61■■□□□ 1.21
NOTCH3-201ENST00000263388 NAP1L5Q96NT1 182 aaPredicted RBP22.58■■□□□ 1.21
NOTCH3-201ENST00000263388 NACADO15069 1562 aa22.57■■□□□ 1.2
NOTCH3-201ENST00000263388 MS4A1P11836 297 aa22.56■■□□□ 1.2
NOTCH3-201ENST00000263388 PPP4R2Q9NY27 417 aa22.56■■□□□ 1.2
NOTCH3-201ENST00000263388 MYO15BQ96JP2 1530 aa22.56■■□□□ 1.2
NOTCH3-201ENST00000263388 NOP58Q9Y2X3 529 aaKnown RBP22.55■■□□□ 1.2
NOTCH3-201ENST00000263388 NRDCO43847 1150 aa22.55■■□□□ 1.2
NOTCH3-201ENST00000263388 MAPK8IP3Q9UPT6 1336 aa22.54■■□□□ 1.2
NOTCH3-201ENST00000263388 CHAF1AQ13111 956 aaPredicted RBP22.54■■□□□ 1.2
NOTCH3-201ENST00000263388 KIF27Q86VH2 1401 aa22.53■■□□□ 1.2
NOTCH3-201ENST00000263388 PLEKHD1A6NEE1 506 aa22.53■■□□□ 1.2
NOTCH3-201ENST00000263388 PNNQ9H307 717 aaKnown RBP22.53■■□□□ 1.2
NOTCH3-201ENST00000263388 ZBTB7CA1YPR0 619 aa22.52■■□□□ 1.2
NOTCH3-201ENST00000263388 CARD11Q9BXL7 1154 aa22.51■■□□□ 1.19
NOTCH3-201ENST00000263388 HSP90AB1P08238 724 aaKnown RBP22.51■■□□□ 1.19
NOTCH3-201ENST00000263388 BAZ1BQ9UIG0 1483 aaKnown RBP22.5■■□□□ 1.19
NOTCH3-201ENST00000263388 NUDCQ9Y266 331 aa22.5■■□□□ 1.19
NOTCH3-201ENST00000263388 RGL3Q3MIN7 710 aa22.49■■□□□ 1.19
NOTCH3-201ENST00000263388 WRNQ14191 1432 aaPredicted RBP eCLIP22.45■■□□□ 1.18
NOTCH3-201ENST00000263388 FHAD1B1AJZ9 1412 aa22.45■■□□□ 1.18
NOTCH3-201ENST00000263388 CFDP1Q9UEE9 299 aaPredicted RBP22.44■■□□□ 1.18
NOTCH3-201ENST00000263388 LAS1LQ9Y4W2 734 aaKnown RBP22.42■■□□□ 1.18
NOTCH3-201ENST00000263388 CFAP44Q96MT7 982 aa22.42■■□□□ 1.18
NOTCH3-201ENST00000263388 TNIKQ9UKE5 1360 aa22.41■■□□□ 1.18
NOTCH3-201ENST00000263388 FGD1P98174 961 aa22.41■■□□□ 1.18
NOTCH3-201ENST00000263388 RGS3P49796 1198 aa22.4■■□□□ 1.18
NOTCH3-201ENST00000263388 HAP1P54257 671 aaPredicted RBP22.4■■□□□ 1.18
NOTCH3-201ENST00000263388 TPRNQ4KMQ1 711 aa22.4■■□□□ 1.18
NOTCH3-201ENST00000263388 HSCBQ8IWL3 235 aa22.39■■□□□ 1.18
NOTCH3-201ENST00000263388 KCNH8Q96L42 1107 aa22.39■■□□□ 1.18
NOTCH3-201ENST00000263388 L1TD1Q5T7N2 865 aaKnown RBP22.38■■□□□ 1.17
NOTCH3-201ENST00000263388 PLCB2Q00722 1185 aa22.37■■□□□ 1.17
NOTCH3-201ENST00000263388 KCNJ4P48050 445 aa22.37■■□□□ 1.17
NOTCH3-201ENST00000263388 MSNP26038 577 aaKnown RBP22.37■■□□□ 1.17
NOTCH3-201ENST00000263388 FRAT1Q92837 279 aaPredicted RBP22.36■■□□□ 1.17
NOTCH3-201ENST00000263388 OS9Q13438 667 aaPredicted RBP22.36■■□□□ 1.17
NOTCH3-201ENST00000263388 BAZ1AQ9NRL2 1556 aaPredicted RBP22.35■■□□□ 1.17
NOTCH3-201ENST00000263388 PLEKHG5O94827 1062 aa22.35■■□□□ 1.17
NOTCH3-201ENST00000263388 NEUROD2Q15784 382 aa22.34■■□□□ 1.17
NOTCH3-201ENST00000263388 MCCP23508 829 aa22.34■■□□□ 1.17
NOTCH3-201ENST00000263388 GOLGA6L4A6NEF3 574 aa22.33■■□□□ 1.16
NOTCH3-201ENST00000263388 SENP3Q9H4L4 574 aaPredicted RBP22.32■■□□□ 1.16
NOTCH3-201ENST00000263388 POGKQ9P215 609 aa22.31■■□□□ 1.16
NOTCH3-201ENST00000263388 CCNB3Q8WWL7 1395 aa22.31■■□□□ 1.16
NOTCH3-201ENST00000263388 PTMSP20962 102 aa22.3■■□□□ 1.16
NOTCH3-201ENST00000263388 KANK1Q14678 1352 aa22.28■■□□□ 1.16
NOTCH3-201ENST00000263388 GOLGA2Q08379 1002 aa22.27■■□□□ 1.16
NOTCH3-201ENST00000263388 TMF1P82094 1093 aa22.27■■□□□ 1.16
NOTCH3-201ENST00000263388 RTN4Q9NQC3 1192 aaKnown RBP22.27■■□□□ 1.16
NOTCH3-201ENST00000263388 ARID4BQ4LE39 1312 aaPredicted RBP22.27■■□□□ 1.16
NOTCH3-201ENST00000263388 CC2D1BQ5T0F9 858 aaKnown RBP22.27■■□□□ 1.16
NOTCH3-201ENST00000263388 B4GALNT3Q6L9W6 998 aa22.26■■□□□ 1.15
NOTCH3-201ENST00000263388 TULP1O00294 542 aaPredicted RBP22.25■■□□□ 1.15
NOTCH3-201ENST00000263388 NPHP1O15259 732 aa22.25■■□□□ 1.15
NOTCH3-201ENST00000263388 EIF4G1Q04637 1599 aaKnown RBP22.23■■□□□ 1.15
NOTCH3-201ENST00000263388 NAP1L2Q9ULW6 460 aaPredicted RBP22.23■■□□□ 1.15
NOTCH3-201ENST00000263388 ARHGAP35Q9NRY4 1499 aa22.23■■□□□ 1.15
NOTCH3-201ENST00000263388 SENP3-EIF4A1A0A087X0R7 540 aa22.23■■□□□ 1.15
NOTCH3-201ENST00000263388 U2SURPO15042 1029 aaKnown RBP22.22■■□□□ 1.15
NOTCH3-201ENST00000263388 DRC7Q8IY82 874 aa22.22■■□□□ 1.15
NOTCH3-201ENST00000263388 TIMELESSQ9UNS1 1208 aa22.21■■□□□ 1.15
NOTCH3-201ENST00000263388 CCER2I3L3R5 266 aa22.21■■□□□ 1.15
NOTCH3-201ENST00000263388 ERCC6Q03468 1493 aa22.18■■□□□ 1.14
NOTCH3-201ENST00000263388 KIAA2012Q0VF49 1180 aa22.15■■□□□ 1.14
NOTCH3-201ENST00000263388 GBP4Q96PP9 640 aa22.15■■□□□ 1.14
NOTCH3-201ENST00000263388 TAOK2Q9UL54 1235 aa22.14■■□□□ 1.14
NOTCH3-201ENST00000263388 KTN1Q86UP2 1357 aaKnown RBP22.14■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms