RNA–Protein interactions for RNA: ENST00000261556.10

TMEM260-201, Transcript of transmembrane protein 260, humanhuman

APPRIS P1 TSL 2 BASIC

Gene TMEM260, Length 4,264 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM260-201ENST00000261556 B4GALNT3Q6L9W6 998 aa17.66■□□□□ 0.42
TMEM260-201ENST00000261556 ZNF326Q5BKZ1 582 aaKnown RBP17.63■□□□□ 0.41
TMEM260-201ENST00000261556 BRPF3Q9ULD4 1205 aa17.58■□□□□ 0.4
TMEM260-201ENST00000261556 HIRIP3Q9BW71 556 aaPredicted RBP17.56■□□□□ 0.4
TMEM260-201ENST00000261556 ZMYND15Q9H091 742 aa17.56■□□□□ 0.4
TMEM260-201ENST00000261556 PAK3O75914 559 aaPredicted RBP17.56■□□□□ 0.4
TMEM260-201ENST00000261556 RSPH6AQ9H0K4 717 aa17.55■□□□□ 0.4
TMEM260-201ENST00000261556 ZNF777Q9ULD5 760 aaPredicted RBP17.54■□□□□ 0.4
TMEM260-201ENST00000261556 HSP90AA2PQ14568 343 aaPredicted RBP17.54■□□□□ 0.4
TMEM260-201ENST00000261556 AMER1Q5JTC6 1135 aaPredicted RBP17.54■□□□□ 0.4
TMEM260-201ENST00000261556 HSP90AA1P07900 732 aaKnown RBP17.49■□□□□ 0.39
TMEM260-201ENST00000261556 PPP4R2Q9NY27 417 aa17.47■□□□□ 0.39
TMEM260-201ENST00000261556 PPM1GO15355 546 aaPredicted RBP17.45■□□□□ 0.38
TMEM260-201ENST00000261556 IPO9Q96P70 1041 aaKnown RBP17.44■□□□□ 0.38
TMEM260-201ENST00000261556 FAM9BQ8IZU0 186 aa17.41■□□□□ 0.38
TMEM260-201ENST00000261556 ARID3AQ99856 593 aa17.41■□□□□ 0.38
TMEM260-201ENST00000261556 SENP3-EIF4A1A0A087X0R7 540 aa17.38■□□□□ 0.37
TMEM260-201ENST00000261556 PDE4CQ08493 712 aa17.38■□□□□ 0.37
TMEM260-201ENST00000261556 PNNQ9H307 717 aaKnown RBP17.35■□□□□ 0.37
TMEM260-201ENST00000261556 GSE1Q14687 1217 aa17.31■□□□□ 0.36
TMEM260-201ENST00000261556 NPM1P06748 294 aaKnown RBP eCLIP17.3■□□□□ 0.36
TMEM260-201ENST00000261556 NACADO15069 1562 aa17.29■□□□□ 0.36
TMEM260-201ENST00000261556 RB1CC1Q8TDY2 1594 aa17.28■□□□□ 0.36
TMEM260-201ENST00000261556 CHMP7Q8WUX9 453 aaPredicted RBP17.25■□□□□ 0.35
TMEM260-201ENST00000261556 CHIC2Q9UKJ5 165 aa17.24■□□□□ 0.35
TMEM260-201ENST00000261556 CHGAP10645 457 aaKnown RBP17.22■□□□□ 0.35
TMEM260-201ENST00000261556 ESF1Q9H501 851 aaKnown RBP17.22■□□□□ 0.35
TMEM260-201ENST00000261556 PLPPR3Q6T4P5 718 aa17.2■□□□□ 0.34
TMEM260-201ENST00000261556 RBM10P98175 930 aaKnown RBP17.19■□□□□ 0.34
TMEM260-201ENST00000261556 RSF1Q96T23 1441 aaPredicted RBP17.19■□□□□ 0.34
TMEM260-201ENST00000261556 USP35Q9P2H5 1018 aa17.19■□□□□ 0.34
TMEM260-201ENST00000261556 SLC4A3P48751 1232 aa17.17■□□□□ 0.34
TMEM260-201ENST00000261556 SIN3AQ96ST3 1273 aa17.17■□□□□ 0.34
TMEM260-201ENST00000261556 TRIM44Q96DX7 344 aaPredicted RBP17.17■□□□□ 0.34
TMEM260-201ENST00000261556 FRAT1Q92837 279 aaPredicted RBP17.16■□□□□ 0.34
TMEM260-201ENST00000261556 DDRGK1Q96HY6 314 aa17.16■□□□□ 0.34
TMEM260-201ENST00000261556 TNNT2P45379 298 aaPredicted RBP17.15■□□□□ 0.34
TMEM260-201ENST00000261556 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.14■□□□□ 0.33
TMEM260-201ENST00000261556 CDK11BP21127 795 aaKnown RBP17.14■□□□□ 0.33
TMEM260-201ENST00000261556 STAG3Q9UJ98 1225 aa17.13■□□□□ 0.33
TMEM260-201ENST00000261556 TSPY4P0CV99 314 aa17.11■□□□□ 0.33
TMEM260-201ENST00000261556 TSPY10P0CW01 314 aa17.11■□□□□ 0.33
TMEM260-201ENST00000261556 MRS2Q9HD23 443 aa17.11■□□□□ 0.33
TMEM260-201ENST00000261556 MTUS2Q5JR59 1369 aa17.1■□□□□ 0.33
TMEM260-201ENST00000261556 TONSLQ96HA7 1378 aa17.1■□□□□ 0.33
TMEM260-201ENST00000261556 BCL11BQ9C0K0 894 aaPredicted RBP17.06■□□□□ 0.32
TMEM260-201ENST00000261556 PDIA4P13667 645 aaKnown RBP17.06■□□□□ 0.32
TMEM260-201ENST00000261556 FAM43AQ8N2R8 423 aa17.05■□□□□ 0.32
TMEM260-201ENST00000261556 GZF1Q9H116 711 aaPredicted RBP17.05■□□□□ 0.32
TMEM260-201ENST00000261556 CLIP1P30622 1438 aa17.04■□□□□ 0.32
TMEM260-201ENST00000261556 ANP32BQ92688 251 aaKnown RBP17.03■□□□□ 0.32
TMEM260-201ENST00000261556 NFKBIBQ15653 356 aa17.02■□□□□ 0.32
TMEM260-201ENST00000261556 RRP9O43818 475 aaKnown RBP17.01■□□□□ 0.31
TMEM260-201ENST00000261556 L1TD1Q5T7N2 865 aaKnown RBP17■□□□□ 0.31
TMEM260-201ENST00000261556 BAZ1BQ9UIG0 1483 aaKnown RBP17■□□□□ 0.31
TMEM260-201ENST00000261556 CCER2I3L3R5 266 aa16.99■□□□□ 0.31
TMEM260-201ENST00000261556 WRNQ14191 1432 aaPredicted RBP eCLIP16.99■□□□□ 0.31
TMEM260-201ENST00000261556 KDM2AQ9Y2K7 1162 aa16.99■□□□□ 0.31
TMEM260-201ENST00000261556 CANXP27824 592 aaKnown RBP16.97■□□□□ 0.31
TMEM260-201ENST00000261556 RRP7BPQ9NSQ0 103 aa16.97■□□□□ 0.31
TMEM260-201ENST00000261556 RGS3P49796 1198 aa16.96■□□□□ 0.31
TMEM260-201ENST00000261556 PLEKHD1A6NEE1 506 aa16.96■□□□□ 0.3
TMEM260-201ENST00000261556 NCLP19338 710 aaKnown RBP16.95■□□□□ 0.3
TMEM260-201ENST00000261556 CECR2Q9BXF3 1484 aa16.94■□□□□ 0.3
TMEM260-201ENST00000261556 BBXQ8WY36 941 aaPredicted RBP16.93■□□□□ 0.3
TMEM260-201ENST00000261556 ZBTB7CA1YPR0 619 aa16.93■□□□□ 0.3
TMEM260-201ENST00000261556 FAM13BQ9NYF5 915 aa16.93■□□□□ 0.3
TMEM260-201ENST00000261556 SLKQ9H2G2 1235 aaPredicted RBP16.93■□□□□ 0.3
TMEM260-201ENST00000261556 MAPK8IP2Q13387 824 aaPredicted RBP16.91■□□□□ 0.3
TMEM260-201ENST00000261556 AEBP2Q6ZN18 517 aaPredicted RBP16.91■□□□□ 0.3
TMEM260-201ENST00000261556 PDE4AP27815 886 aa16.91■□□□□ 0.3
TMEM260-201ENST00000261556 SENP3Q9H4L4 574 aaPredicted RBP16.91■□□□□ 0.3
TMEM260-201ENST00000261556 FGD1P98174 961 aa16.9■□□□□ 0.3
TMEM260-201ENST00000261556 CEP162Q5TB80 1403 aa16.88■□□□□ 0.29
TMEM260-201ENST00000261556 FRAT2O75474 233 aaPredicted RBP16.88■□□□□ 0.29
TMEM260-201ENST00000261556 SPRYD3Q8NCJ5 442 aa16.87■□□□□ 0.29
TMEM260-201ENST00000261556 EEA1Q15075 1411 aa16.87■□□□□ 0.29
TMEM260-201ENST00000261556 KIF27Q86VH2 1401 aa16.87■□□□□ 0.29
TMEM260-201ENST00000261556 C11orf95C9JLR9 678 aaPredicted RBP16.86■□□□□ 0.29
TMEM260-201ENST00000261556 GOLGA6L3A6NEY3 463 aa16.86■□□□□ 0.29
TMEM260-201ENST00000261556 ZHX1Q9UKY1 873 aaPredicted RBP16.86■□□□□ 0.29
TMEM260-201ENST00000261556 PAXIP1Q6ZW49 1069 aaPredicted RBP16.85■□□□□ 0.29
TMEM260-201ENST00000261556 AAMPQ13685 434 aa16.84■□□□□ 0.29
TMEM260-201ENST00000261556 GOLGA3Q08378 1498 aa16.83■□□□□ 0.28
TMEM260-201ENST00000261556 CFDP1Q9UEE9 299 aaPredicted RBP16.83■□□□□ 0.28
TMEM260-201ENST00000261556 TCERG1O14776 1098 aaKnown RBP16.82■□□□□ 0.28
TMEM260-201ENST00000261556 RGL3Q3MIN7 710 aa16.82■□□□□ 0.28
TMEM260-201ENST00000261556 DNTTIP2Q5QJE6 756 aaKnown RBP16.81■□□□□ 0.28
TMEM260-201ENST00000261556 CHMP4BQ9H444 224 aaKnown RBP16.81■□□□□ 0.28
TMEM260-201ENST00000261556 PRDM10Q9NQV6 1147 aa16.8■□□□□ 0.28
TMEM260-201ENST00000261556 BECN1Q14457 450 aa16.8■□□□□ 0.28
TMEM260-201ENST00000261556 MYH16Q9H6N6 1097 aa16.8■□□□□ 0.28
TMEM260-201ENST00000261556 TMC1Q8TDI8 760 aa16.8■□□□□ 0.28
TMEM260-201ENST00000261556 PLCD3Q8N3E9 789 aa16.79■□□□□ 0.28
TMEM260-201ENST00000261556 BAZ1AQ9NRL2 1556 aaPredicted RBP16.79■□□□□ 0.28
TMEM260-201ENST00000261556 MSNP26038 577 aaKnown RBP16.79■□□□□ 0.28
TMEM260-201ENST00000261556 WASHC2AQ641Q2 1341 aa16.78■□□□□ 0.28
TMEM260-201ENST00000261556 ERCC6Q03468 1493 aa16.78■□□□□ 0.28
TMEM260-201ENST00000261556 UPF2Q9HAU5 1272 aaKnown RBP16.77■□□□□ 0.27
TMEM260-201ENST00000261556 TNIKQ9UKE5 1360 aa16.73■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms